Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18346 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 1.2e-206 723.0 368 100.0
Rhsim08G0042800 Rhododendron simsii HOM05D002875 ORTHO05D003215 6.3e-120 434.9 259 85.3
CSS0013993 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 1.0e-109 401.0 259 79.9
Actinidia04438 Actinidia chinensis HOM05D002875 ORTHO05D003215 1.8e-106 390.2 259 77.2
Dinv25659 Davidia involucrata HOM05D002875 ORTHO05D003215 1.1e-97 360.9 260 72.3
CSS0041276 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 1.1e-87 327.8 211 79.6
Atru.chr6.2572 Acer truncatum HOM05D002875 ORTHO05D003215 2.8e-80 303.1 259 61.8
Prupe.3G306400 Prunus persica HOM05D002875 ORTHO05D003215 7.5e-73 278.5 261 61.3
Manes.17G103200 Manihot esculenta HOM05D002875 ORTHO05D003215 1.7e-72 277.3 262 58.0
Thecc.04G036100 Theobroma cacao HOM05D002875 ORTHO05D003215 1.7e-72 277.3 275 55.6
TAR374G0377 Trochodendron aralioides HOM05D002875 ORTHO05D003215 5.4e-71 272.3 265 57.0
QL02p071336 Quercus lobata HOM05D002875 ORTHO05D003215 1.3e-69 267.7 262 55.3
MD09G1010700 Malus domestica HOM05D002875 ORTHO05D003215 8.6e-69 265.0 261 59.0
COL.COLO4_13262 Corchorus olitorius HOM05D002875 ORTHO05D003215 1.5e-68 264.2 275 54.2
Gohir.D04G076700 Gossypium hirsutum HOM05D002875 ORTHO05D003215 1.5e-68 264.2 260 55.4
Nn4g22316 Nelumbo nucifera HOM05D002875 ORTHO05D003215 2.5e-68 263.5 264 54.5
Gorai.012G086500 Gossypium raimondii HOM05D002875 ORTHO05D003215 3.3e-68 263.1 261 55.6
RcHm_v2.0_Chr2g0175571 Rosa chinensis HOM05D002875 ORTHO05D003215 9.5e-68 261.5 278 55.8
Gohir.A05G338300 Gossypium hirsutum HOM05D002875 ORTHO05D003215 2.1e-67 260.4 260 54.6
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 1.8e-66 257.3 248 56.0
FvH4_6g53530 Fragaria vesca HOM05D002875 ORTHO05D003215 2.6e-65 253.4 279 54.8
Haze_03110 Corylus avellana HOM05D002875 ORTHO05D003215 4.9e-64 249.2 261 53.6
Cfa010845 Carpinus fangiana HOM05D002875 ORTHO05D003215 1.1e-63 248.1 260 53.1
CANSAT64G2306 Cannabis sativa HOM05D002875 ORTHO05D003215 1.9e-63 247.3 263 53.6
Potri.001G330000 Populus trichocarpa HOM05D002875 ORTHO05D003215 2.4e-63 246.9 262 51.9
Ciclev10014073m.g Citrus clementina HOM05D002875 ORTHO05D003215 4.1e-63 246.1 273 52.4
CiPaw.03G055700 Carya illinoinensis HOM05D002875 ORTHO05D003215 2.3e-61 240.4 261 51.0
MBI07_g16948_MAGBIO Magnolia biondii HOM05D002875 ORTHO05D003215 1.1e-60 238.0 298 48.3
Phvul.001G093400 Phaseolus vulgaris HOM05D002875 ORTHO05D003215 5.6e-60 235.7 264 52.7
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 2.1e-59 233.8 258 54.7
Sabra16G0211300 Salix brachista HOM05D002875 ORTHO05D003215 2.1e-59 233.8 260 51.9
VMungo1383G3279 Vigna mungo HOM05D002875 ORTHO05D003215 1.1e-58 231.5 262 52.3
FAN14G0620 Fragaria x ananassa HOM05D002875 ORTHO05D003215 5.2e-58 229.2 276 51.8
Aqoxy5G03377 Aquilegia oxysepala HOM05D002875 ORTHO05D003215 6.8e-58 228.8 263 51.3
Duzib187G0064 Durio zibethinus HOM05D002875 ORTHO05D003215 8.9e-58 228.4 222 54.5
Glyma.16G056400 Glycine max HOM05D002875 ORTHO05D003215 2.6e-57 226.9 262 51.1
DCAR_000966 Daucus carota HOM05D002875 ORTHO05D003215 3.4e-57 226.5 258 48.4
GSVIVG01033092001 Vitis vinifera HOM05D002875 ORTHO05D003215 4.4e-57 226.1 168 68.5
Glyma.19G091300 Glycine max HOM05D002875 ORTHO05D003215 1.3e-56 224.6 261 51.7
Lalb_Chr14g0363441 Lupinus albus HOM05D002875 ORTHO05D003215 1.6e-54 217.6 262 49.6
arahy.Tifrunner.gnm1.ann1.E3K3GD Arachis hypogaea HOM05D002875 ORTHO05D003215 3.0e-53 213.4 263 49.8
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 2.5e-52 210.3 228 53.9
arahy.Tifrunner.gnm1.ann1.AA3MKH Arachis hypogaea HOM05D002875 ORTHO05D003215 7.3e-52 208.8 263 50.2
THA.LOC104823982 Tarenaya hassleriana HOM05D002875 ORTHO05D003215 3.4e-49 199.9 262 46.6
AagrBONN_evm.TU.Sc2ySwM_228.3556 Anthoceros agrestis HOM05D002875 ORTHO05D003215 6.9e-34 149.1 262 37.8
Pp3c9_870 Physcomitrium patens HOM05D002875 ORTHO05D003215 6.0e-30 136.0 293 34.8
Mapoly0015s0063 Marchantia polymorpha HOM05D002875 ORTHO05D003215 3.3e-28 130.2 151 50.3
Pp3c9_12560 Physcomitrium patens HOM05D002875 ORTHO05D003215 1.2e-25 121.7 148 41.2
PGSC0003DMG400018158 Solanum tuberosum HOM05D002875 ORTHO05D003215 1.2e-25 121.7 239 32.2
AagrBONN_evm.TU.Sc2ySwM_340.780 Anthoceros agrestis HOM05D002875 ORTHO05D003215 4.5e-25 119.8 136 47.8
QL10p009349 Quercus lobata HOM05D002875 ORTHO05D003215 4.5e-25 119.8 196 36.7
SEGI_08382 Sequoiadendron giganteum HOM05D002875 ORTHO05D003215 4.5e-25 119.8 96 64.6
Cfa019158 Carpinus fangiana HOM05D002875 ORTHO05D003215 5.8e-25 119.4 197 38.6
Haze_07529 Corylus avellana HOM05D002875 ORTHO05D003215 9.9e-25 118.6 168 42.3
MBI16_g05467_MAGBIO Magnolia biondii HOM05D002875 ORTHO05D003215 9.9e-25 118.6 145 43.4
vmacro16624 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 9.9e-25 118.6 146 41.8
Dinv20633 Davidia involucrata HOM05D002875 ORTHO05D003215 1.7e-24 117.9 145 40.7
Solyc03g112760.3 Solanum lycopersicum HOM05D002875 ORTHO05D003215 2.9e-24 117.1 239 31.0
Pp3c1_22410 Physcomitrium patens HOM05D002875 ORTHO05D003215 4.9e-24 116.3 150 46.0
Sopen03g031840 Solanum pennellii HOM05D002875 ORTHO05D003215 4.9e-24 116.3 239 31.0
MD06G1171200 Malus domestica HOM05D002875 ORTHO05D003215 8.4e-24 115.5 246 31.7
Manes.06G106500 Manihot esculenta HOM05D002875 ORTHO05D003215 8.4e-24 115.5 158 40.5
Lj3A20G43 Lonicera japonica HOM05D002875 ORTHO05D003215 1.1e-23 115.2 146 41.8
QL10p009524 Quercus lobata HOM05D002875 ORTHO05D003215 1.4e-23 114.8 238 31.1
SMO343G0006 Selaginella moellendorffii HOM05D002875 ORTHO05D003215 1.4e-23 114.8 186 34.9
ECA232G2272 Erigeron canadensis HOM05D002875 ORTHO05D003215 1.9e-23 114.4 192 34.9
SGA_v2.0_scaffold25G10830 Striga asiatica HOM05D002875 ORTHO05D003215 1.9e-23 114.4 147 43.5
FAN13G1897 Fragaria x ananassa HOM05D002875 ORTHO05D003215 2.4e-23 114.0 149 38.3
Aqoxy3G02874 Aquilegia oxysepala HOM05D002875 ORTHO05D003215 5.4e-23 112.8 145 41.4
Migut.O00118 Erythranthe guttata HOM05D002875 ORTHO05D003215 5.4e-23 112.8 147 40.8
Prupe.5G170900 Prunus persica HOM05D002875 ORTHO05D003215 5.4e-23 112.8 171 38.6
CSS0028386 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 7.1e-23 112.5 239 30.5
CiPaw.11G024100 Carya illinoinensis HOM05D002875 ORTHO05D003215 7.1e-23 112.5 204 34.3
CsaV3_1G008630 Cucumis sativus L. HOM05D002875 ORTHO05D003215 9.3e-23 112.1 171 38.6
Nitab4.5_0003229g0110 Nicotiana tabacum HOM05D002875 ORTHO05D003215 1.6e-22 111.3 150 40.0
Potri.015G079000 Populus trichocarpa HOM05D002875 ORTHO05D003215 1.6e-22 111.3 170 37.6
RcHm_v2.0_Chr7g0193221 Rosa chinensis HOM05D002875 ORTHO05D003215 1.6e-22 111.3 149 38.3
TAR629G1476 Trochodendron aralioides HOM05D002875 ORTHO05D003215 1.6e-22 111.3 173 35.8
MSTRG.11469 Avicennia marina HOM05D002875 ORTHO05D003215 2.1e-22 110.9 150 41.3
FvH4_5g05550 Fragaria vesca HOM05D002875 ORTHO05D003215 2.1e-22 110.9 149 37.6
Potri.012G087400 Populus trichocarpa HOM05D002875 ORTHO05D003215 2.1e-22 110.9 170 40.0
DCAR_016049 Daucus carota HOM05D002875 ORTHO05D003215 2.7e-22 110.5 171 38.6
Peaxi162Scf00089g01847 Petunia axillaris HOM05D002875 ORTHO05D003215 3.5e-22 110.2 149 39.6
Nitab4.5_0007371g0020 Nicotiana tabacum HOM05D002875 ORTHO05D003215 4.6e-22 109.8 154 39.6
Sed0012471 Sechium edule HOM05D002875 ORTHO05D003215 4.6e-22 109.8 198 35.9
Sabra15G0103500 Salix brachista HOM05D002875 ORTHO05D003215 6.0e-22 109.4 239 31.8
Cc04_g12200 Coffea canephora HOM05D002875 ORTHO05D003215 7.9e-22 109.0 245 31.0
EL10Ac5g10726 Beta vulgaris HOM05D002875 ORTHO05D003215 1.0e-21 108.6 148 41.2
ClCG01G013270 Citrullus lanatus HOM05D002875 ORTHO05D003215 1.0e-21 108.6 176 37.5
Ciclev10018615m.g Citrus clementina HOM05D002875 ORTHO05D003215 1.0e-21 108.6 150 38.7
TWI39G0667 Tripterygium wilfordii HOM05D002875 ORTHO05D003215 1.0e-21 108.6 150 38.7
Zm00001eb345460 Zea mays HOM05D002875 ORTHO05D003215 1.0e-21 108.6 284 26.8
Glyma.04G185000 Glycine max HOM05D002875 ORTHO05D003215 1.8e-21 107.8 159 38.4
HanXRQChr15g0463021 Helianthus annuus HOM05D002875 ORTHO05D003215 2.3e-21 107.5 147 37.4
Lsat_1_v5_gn_4_75800 Lactuca sativa HOM05D002875 ORTHO05D003215 2.3e-21 107.5 157 38.9
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 2.3e-21 107.5 169 37.9
arahy.Tifrunner.gnm1.ann1.Q9ZI40 Arachis hypogaea HOM05D002875 ORTHO05D003215 3.0e-21 107.1 145 37.9
Carub.0005s1433 Capsella rubella HOM05D002875 ORTHO05D003215 3.0e-21 107.1 223 31.8
MELO3C002277.2 Cucumis melo HOM05D002875 ORTHO05D003215 3.0e-21 107.1 177 37.3
arahy.Tifrunner.gnm1.ann1.H1PHD7 Arachis hypogaea HOM05D002875 ORTHO05D003215 5.1e-21 106.3 145 37.2
CAN.G1166.11 Capsicum annuum HOM05D002875 ORTHO05D003215 6.7e-21 105.9 149 37.6
CAN.G2294.1 Capsicum annuum HOM05D002875 ORTHO05D003215 6.7e-21 105.9 149 37.6
Rhsim12G0166000 Rhododendron simsii HOM05D002875 ORTHO05D003215 6.7e-21 105.9 242 30.2
Eucgr.K02827 Eucalyptus grandis HOM05D002875 ORTHO05D003215 8.7e-21 105.5 146 39.7
ATR1091G018 Amborella trichopoda HOM05D002875 ORTHO05D003215 1.1e-20 105.1 147 38.8
AT3G48200 Arabidopsis thaliana HOM05D002875 ORTHO05D003215 1.1e-20 105.1 223 30.5
SalBow5G4119 Salvia bowleyana HOM05D002875 ORTHO05D003215 1.1e-20 105.1 147 38.8
TWI23G1153 Tripterygium wilfordii HOM05D002875 ORTHO05D003215 1.5e-20 104.8 150 36.7
AL5G27550 Arabidopsis lyrata HOM05D002875 ORTHO05D003215 2.5e-20 104.0 198 32.3
Cpa.g.sc171.14 Carica papaya HOM05D002875 ORTHO05D003215 2.5e-20 104.0 171 39.2
Thhalv10010082m.g Eutrema salsugineum HOM05D002875 ORTHO05D003215 2.5e-20 104.0 223 30.9
CANSAT80G1146 Cannabis sativa HOM05D002875 ORTHO05D003215 3.3e-20 103.6 150 38.0
CDE01G0076 Ceratophyllum demersum HOM05D002875 ORTHO05D003215 3.3e-20 103.6 150 36.7
Lj1g0027129 Lotus japonicus HOM05D002875 ORTHO05D003215 3.3e-20 103.6 146 36.3
Nn3g16811 Nelumbo nucifera HOM05D002875 ORTHO05D003215 3.3e-20 103.6 171 33.3
vmacro01415 Vaccinium macrocarpon HOM05D000072 ORTHO05D000026 3.3e-20 103.6 91 61.5
PGR044G0014 Punica granatum HOM05D002875 ORTHO05D003215 4.3e-20 103.2 146 37.7
QL10p009141 Quercus lobata HOM05D002875 ORTHO05D003215 4.3e-20 103.2 164 36.6
Thecc.03G015100 Theobroma cacao HOM05D002875 ORTHO05D003215 4.3e-20 103.2 146 38.4
Ca_26884_v3 Cicer arietinum L. HOM05D002875 ORTHO05D003215 5.6e-20 102.8 152 37.5
HanXRQChr09g0272101 Helianthus annuus HOM05D002875 ORTHO05D003215 5.6e-20 102.8 157 36.9
Os05g0594500 Oryza sativa ssp. japonica HOM05D002875 ORTHO05D003215 9.6e-20 102.1 150 36.7
TPR.G17138 Trifolium pratense HOM05D002875 ORTHO05D003215 9.6e-20 102.1 239 32.6
COL.COLO4_30079 Corchorus olitorius HOM05D002875 ORTHO05D003215 1.3e-19 101.7 146 38.4
Psat0s2176g0120 Pisum sativum HOM05D002875 ORTHO05D003215 1.3e-19 101.7 153 37.9
HPP92_020270 Vanilla planifolia HOM05D002875 ORTHO05D003215 1.3e-19 101.7 151 36.4
CSS0012171 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 2.1e-19 100.9 179 34.1
PSO782G2041 Papaver somniferum HOM05D002875 ORTHO05D003215 2.1e-19 100.9 145 37.2
QL10p009447 Quercus lobata HOM05D002875 ORTHO05D003215 2.1e-19 100.9 161 34.8
Gohir.D12G276200 Gossypium hirsutum HOM05D002875 ORTHO05D003215 2.8e-19 100.5 170 34.7
Gorai.008G296700 Gossypium raimondii HOM05D002875 ORTHO05D003215 2.8e-19 100.5 170 34.7
PSO063G4348 Papaver somniferum HOM05D002875 ORTHO05D003215 2.8e-19 100.5 145 37.2
PSO832G2157 Papaver somniferum HOM05D002875 ORTHO05D003215 2.8e-19 100.5 145 37.2
Phvul.009G176900 Phaseolus vulgaris HOM05D002875 ORTHO05D003215 2.8e-19 100.5 153 36.6
QL10p009076 Quercus lobata HOM05D002875 ORTHO05D003215 2.8e-19 100.5 145 37.9
CSS0013183 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 3.7e-19 100.1 179 33.5
QL10p009474 Quercus lobata HOM05D002875 ORTHO05D003215 3.7e-19 100.1 148 36.5
Hund02758 Selenicereus undatus HOM05D002875 ORTHO05D003215 3.7e-19 100.1 144 41.0
Actinidia30873 Actinidia chinensis HOM05D002875 ORTHO05D003215 4.8e-19 99.8 225 34.7
Sed0001364 Sechium edule HOM05D002875 ORTHO05D003215 4.8e-19 99.8 170 34.1
Duzib205G0575 Durio zibethinus HOM05D002875 ORTHO05D003215 6.2e-19 99.4 146 37.7
Medtr3g077550 Medicago truncatula HOM05D002875 ORTHO05D003215 8.1e-19 99.0 153 37.3
Sp5g13820 Schrenkiella parvula HOM05D002875 ORTHO05D003215 8.1e-19 99.0 198 31.8
Gohir.A12G275500 Gossypium hirsutum HOM05D002875 ORTHO05D003215 1.1e-18 98.6 170 34.1
VMungo1309G1778 Vigna mungo HOM05D002875 ORTHO05D003215 1.1e-18 98.6 153 35.9
Ah.11g051480 Amaranthus hybridus HOM05D002875 ORTHO05D003215 2.4e-18 97.4 146 37.7
CARHR156950 Cardamine hirsuta HOM05D002875 ORTHO05D003215 2.4e-18 97.4 195 31.8
CiPaw.12G028200 Carya illinoinensis HOM05D002875 ORTHO05D003215 3.1e-18 97.1 116 42.2
THA.LOC104818213 Tarenaya hassleriana HOM05D002875 ORTHO05D003215 3.1e-18 97.1 157 35.7
Hma1.2p1_0149F.1_g066580 Hydrangea macrophylla HOM05D002875 ORTHO05D003215 1.2e-17 95.1 178 35.4
Oeu016411.4 Olea europaea HOM05D002875 ORTHO05D003215 1.2e-17 95.1 199 31.2
vmacro20694 Vaccinium macrocarpon HOM05D000064 ORTHO05D001480 1.5e-17 94.7 68 73.5
Hma1.2p1_0149F.1_g066560 Hydrangea macrophylla HOM05D002875 ORTHO05D003215 2.6e-17 94.0 140 39.3
BcaB01g00838 Brassica carinata HOM05D002875 ORTHO05D003215 3.4e-17 93.6 198 29.8
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 4.5e-17 93.2 149 36.2
unitig_26.g9618 Utricularia gibba HOM05D002875 ORTHO05D003215 4.5e-17 93.2 146 35.6
A06p19500 Brassica napus HOM05D002875 ORTHO05D003215 7.6e-17 92.4 198 29.8
BraA06t25029Z Brassica rapa HOM05D002875 ORTHO05D003215 7.6e-17 92.4 198 29.8
AUR62030942 Chenopodium quinoa HOM05D002875 ORTHO05D003215 7.6e-17 92.4 126 39.7
arahy.Tifrunner.gnm1.ann1.2000FW Arachis hypogaea HOM05D002875 ORTHO05D003215 9.9e-17 92.0 92 59.8
Lalb_Chr11g0071501 Lupinus albus HOM05D002875 ORTHO05D003215 9.9e-17 92.0 153 32.7
Atru.chr9.2501 Acer truncatum HOM05D002875 ORTHO05D003215 1.3e-16 91.7 146 37.7
BcaC07g39302 Brassica carinata HOM05D002875 ORTHO05D003215 1.7e-16 91.3 198 29.8
C08p23160 Brassica napus HOM05D002875 ORTHO05D003215 1.7e-16 91.3 198 29.8
BolC8t49950H Brassica oleracea HOM05D002875 ORTHO05D003215 1.7e-16 91.3 198 29.8
QL10p009197 Quercus lobata HOM05D002875 ORTHO05D003215 1.1e-15 88.6 187 34.8
QL10p009017 Quercus lobata HOM05D002875 ORTHO05D003215 1.5e-12 78.2 171 31.6
FAN18G4336 Fragaria x ananassa HOM05D002875 ORTHO05D003215 3.7e-11 73.6 102 37.3
QL10p009041 Quercus lobata HOM05D002875 ORTHO05D003215 3.7e-11 73.6 150 32.0
AUR62008190 Chenopodium quinoa HOM05D002875 ORTHO05D003215 1.8e-10 71.2 104 39.4
QL10p009241 Quercus lobata HOM05D002875 ORTHO05D003215 1.7e-08 64.7 159 28.9
Sc04g0001700 Simmondsia chinensis HOM05D002875 ORTHO05D003215 2.2e-08 64.3 99 38.4
CSS0041826 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 1.9e-07 61.2 38 78.9
QL10p009343 Quercus lobata HOM05D002875 ORTHO05D003215 5.5e-07 59.7 101 34.7
QL10p009301 Quercus lobata HOM05D002875 ORTHO05D003215 2.7e-06 57.4 41 56.1
QL10p009914 Quercus lobata HOM05D002875 ORTHO05D003215 2.7e-06 57.4 60 43.3
QL10p010243 Quercus lobata HOM05D002875 ORTHO05D003215 7.9e-06 55.8 102 29.4


User provided reference genes

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