Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18327 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 3.7e-51 204.9 128 100.0
Rhsim08G0044400 Rhododendron simsii HOM05D005860 ORTHO05D006977 7.7e-33 144.1 106 87.7
vmacro18326 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 7.0e-26 120.9 98 82.7
Eucgr.J02311 Eucalyptus grandis HOM05D005860 ORTHO05D006977 4.7e-22 108.2 95 53.7
Sed0015041 Sechium edule HOM05D005860 ORTHO05D006977 6.1e-22 107.8 98 56.1
ATR0686G162 Amborella trichopoda HOM05D005860 ORTHO05D006977 3.3e-20 102.1 95 52.6
CANSAT64G0040 Cannabis sativa HOM05D005860 ORTHO05D006977 5.7e-20 101.3 95 71.6
TPR.G5727 Trifolium pratense HOM05D001503 ORTHO05D003820 9.7e-20 100.5 93 52.7
Rhsim08G0044500 Rhododendron simsii HOM05D005860 ORTHO05D006977 2.4e-18 95.9 98 71.4
Os02g0602400 Oryza sativa ssp. japonica HOM05D005860 ORTHO05D006977 4.1e-18 95.1 95 46.3
Rhsim08G0045000 Rhododendron simsii HOM05D005860 ORTHO05D006977 5.0e-16 88.2 101 64.4
Glyma.09G171766 Glycine max HOM05D005860 ORTHO05D006977 1.5e-12 76.6 127 48.0
Cc02_g00900 Coffea canephora HOM05D005860 ORTHO05D006977 2.0e-12 76.3 128 45.3
Potri.017G067600 Populus trichocarpa HOM05D005860 ORTHO05D006977 2.6e-12 75.9 95 50.5
Rhsim08G0044700 Rhododendron simsii HOM05D005860 ORTHO05D006977 2.6e-12 75.9 98 63.3
PSO063G3212 Papaver somniferum HOM05D005860 ORTHO05D006977 3.4e-12 75.5 95 41.1
GSVIVG01001819001 Vitis vinifera HOM05D005860 ORTHO05D006977 1.3e-11 73.6 103 50.5
ATR0686G114 Amborella trichopoda HOM05D005860 ORTHO05D006977 4.8e-11 71.6 95 40.0
Nn4g22386 Nelumbo nucifera HOM05D005860 ORTHO05D006977 4.8e-11 71.6 46 73.9
PSO782G4049 Papaver somniferum HOM05D005860 ORTHO05D006977 8.3e-11 70.9 95 40.0
CiPaw.04G034700 Carya illinoinensis HOM05D005860 ORTHO05D006977 1.8e-10 69.7 95 38.9
Glyma.05G075600 Glycine max HOM05D005860 ORTHO05D006977 1.8e-10 69.7 124 46.8
Psat1g161720 Pisum sativum HOM05D005860 ORTHO05D006977 1.8e-10 69.7 95 47.4
Rhsim08G0044900 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.8e-10 69.7 98 60.2
PGR083G1804 Punica granatum HOM05D005860 ORTHO05D006977 2.4e-10 69.3 96 42.7
Sed0023405 Sechium edule HOM05D005860 ORTHO05D006977 2.4e-10 69.3 98 56.1
TAR622G0256 Trochodendron aralioides HOM05D005860 ORTHO05D006977 2.4e-10 69.3 95 40.0
Haze_00763 Corylus avellana HOM05D005860 ORTHO05D006977 5.4e-10 68.2 48 62.5
Phvul.004G055500 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 5.4e-10 68.2 128 43.0
Atru.chr4.382 Acer truncatum HOM05D005860 ORTHO05D006977 9.1e-10 67.4 95 38.9
Ciclev10011572m.g Citrus clementina HOM05D005860 ORTHO05D006977 9.1e-10 67.4 95 37.9
COL.COLO4_03595 Corchorus olitorius HOM05D005860 ORTHO05D006977 2.0e-09 66.2 100 55.0
QL02p072028 Quercus lobata HOM05D005860 ORTHO05D006977 2.0e-09 66.2 95 57.9
Aqoxy5G03469 Aquilegia oxysepala HOM05D005860 ORTHO05D006977 2.7e-09 65.9 76 64.5
ClCG01G016270 Citrullus lanatus HOM05D005860 ORTHO05D006977 2.7e-09 65.9 98 56.1
Peaxi162Scf00420g00442 Petunia axillaris HOM05D005860 ORTHO05D006977 3.5e-09 65.5 98 40.8
Zm00001eb246440 Zea mays HOM05D005860 ORTHO05D006977 3.5e-09 65.5 101 33.7
Oeu058768.1 Olea europaea HOM05D005860 ORTHO05D006977 5.9e-09 64.7 93 37.6
Sabra17G0063700 Salix brachista HOM05D005860 ORTHO05D006977 5.9e-09 64.7 95 34.7
Phvul.004G147000 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 7.7e-09 64.3 64 76.6
Gohir.A10G079300 Gossypium hirsutum HOM05D005860 ORTHO05D006977 1.0e-08 63.9 67 43.3
Gorai.011G077700 Gossypium raimondii HOM05D005860 ORTHO05D006977 1.0e-08 63.9 67 43.3
Haze_14838 Corylus avellana HOM05D005860 ORTHO05D006977 1.3e-08 63.5 63 47.6
VMungo0464G0018 Vigna mungo HOM05D005860 ORTHO05D006977 1.3e-08 63.5 67 73.1
Lalb_Chr02g0157831 Lupinus albus HOM05D005860 ORTHO05D006977 1.7e-08 63.2 95 54.7
Mapoly0029s0044 Marchantia polymorpha HOM05D005860 ORTHO05D006977 1.7e-08 63.2 95 44.2
CAN.G473.79 Capsicum annuum HOM05D005860 ORTHO05D006977 2.2e-08 62.8 98 38.8
Solyc02g093940.3 Solanum lycopersicum HOM05D005860 ORTHO05D006977 2.2e-08 62.8 98 37.8
Duzib116G0811 Durio zibethinus HOM05D005860 ORTHO05D006977 2.9e-08 62.4 67 41.8
ECA232G2764 Erigeron canadensis HOM05D005860 ORTHO05D006977 2.9e-08 62.4 95 48.4
Sopen02g038590 Solanum pennellii HOM05D005860 ORTHO05D006977 2.9e-08 62.4 98 37.8
TAR629G2046 Trochodendron aralioides HOM05D005860 ORTHO05D006977 2.9e-08 62.4 95 35.8
PSO017G5933 Papaver somniferum HOM05D005860 ORTHO05D006977 3.8e-08 62.0 107 49.5
MELO3C007497.2 Cucumis melo HOM05D005860 ORTHO05D006977 5.0e-08 61.6 98 53.1
Hma1.2p1_1219F.1_g267900 Hydrangea macrophylla HOM05D005860 ORTHO05D006977 5.0e-08 61.6 103 35.0
PGSC0003DMG400020220 Solanum tuberosum HOM05D005860 ORTHO05D006977 5.0e-08 61.6 95 37.9
Lj2g0013553 Lotus japonicus HOM05D005860 ORTHO05D006977 6.5e-08 61.2 64 73.4
Manes.15G158200 Manihot esculenta HOM05D005860 ORTHO05D006977 6.5e-08 61.2 95 55.8
Nitab4.5_0009757g0020 Nicotiana tabacum HOM05D005860 ORTHO05D006977 6.5e-08 61.2 98 38.8
Nitab4.5_0002887g0110 Nicotiana tabacum HOM05D005860 ORTHO05D006977 8.5e-08 60.8 98 37.8
Medtr2g034600 Medicago truncatula HOM05D005860 ORTHO05D006977 1.1e-07 60.5 64 43.8
PSO478G3943 Papaver somniferum HOM05D005860 ORTHO05D006977 1.1e-07 60.5 107 43.9
unitig_0.g543 Utricularia gibba HOM05D005860 ORTHO05D006977 1.1e-07 60.5 92 38.0
MSTRG.15567 Avicennia marina HOM05D005860 ORTHO05D006977 1.5e-07 60.1 63 76.2
CsaV3_6G042570 Cucumis sativus L. HOM05D005860 ORTHO05D006977 1.5e-07 60.1 107 50.5
Dinv19535 Davidia involucrata HOM05D005860 ORTHO05D006977 1.9e-07 59.7 98 33.7
Lj7A609T51 Lonicera japonica HOM05D005860 ORTHO05D006977 1.9e-07 59.7 69 43.5
THA.LOC104825612 Tarenaya hassleriana HOM05D005860 ORTHO05D006977 1.9e-07 59.7 95 32.6
AL7G41520 Arabidopsis lyrata HOM05D005860 ORTHO05D006977 2.5e-07 59.3 64 42.2
AT4G14605 Arabidopsis thaliana HOM05D005860 ORTHO05D006977 2.5e-07 59.3 64 42.2
arahy.Tifrunner.gnm1.ann1.SB3XQV Arachis hypogaea HOM05D005860 ORTHO05D006977 2.5e-07 59.3 64 71.9
arahy.Tifrunner.gnm1.ann1.WZ54PF Arachis hypogaea HOM05D005860 ORTHO05D006977 2.5e-07 59.3 64 71.9
Sp7g12700 Schrenkiella parvula HOM05D005860 ORTHO05D006977 2.5e-07 59.3 64 42.2
BcaC09g50132 Brassica carinata HOM05D005860 ORTHO05D006977 3.2e-07 58.9 64 42.2
BraA01t02219Z Brassica rapa HOM05D005860 ORTHO05D006977 3.2e-07 58.9 64 42.2
Thhalv10025001m.g Eutrema salsugineum HOM05D005860 ORTHO05D006977 3.2e-07 58.9 64 42.2
Sc16g0003100 Simmondsia chinensis HOM05D005860 ORTHO05D006977 3.2e-07 58.9 95 53.7
A01p23060 Brassica napus HOM05D005860 ORTHO05D006977 4.2e-07 58.5 64 42.2
CARHR220830 Cardamine hirsuta HOM05D005860 ORTHO05D006977 4.2e-07 58.5 64 40.6
Cpa.g.sc171.37 Carica papaya HOM05D005860 ORTHO05D006977 4.2e-07 58.5 64 64.1
Migut.K01447 Erythranthe guttata HOM05D005860 ORTHO05D006977 4.2e-07 58.5 64 45.3
Lju41A50T54 Lonicera japonica HOM05D005860 ORTHO05D006977 4.2e-07 58.5 101 47.5
TWI56G1326 Tripterygium wilfordii HOM05D005860 ORTHO05D006977 4.2e-07 58.5 95 53.7
CSS0028115 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 5.5e-07 58.2 100 48.0
CDE09G0687 Ceratophyllum demersum HOM05D005860 ORTHO05D006977 5.5e-07 58.2 125 40.8
Nitab4.5_0006577g0010 Nicotiana tabacum HOM05D002901 ORTHO05D003183 5.5e-07 58.2 88 38.6
C01p28690 Brassica napus HOM05D005860 ORTHO05D006977 7.2e-07 57.8 64 40.6
BolC1t02795H Brassica oleracea HOM05D005860 ORTHO05D006977 7.2e-07 57.8 64 40.6
Nitab4.5_0000166g0070 Nicotiana tabacum HOM05D002901 ORTHO05D003183 1.6e-06 56.6 88 37.5
BcaB02g08924 Brassica carinata HOM05D002901 ORTHO05D003183 2.1e-06 56.2 88 36.4
BcaNung00353 Brassica carinata HOM05D005860 ORTHO05D006977 2.1e-06 56.2 64 39.1
A05p04170 Brassica napus HOM05D002901 ORTHO05D003183 2.1e-06 56.2 88 36.4
BraA05t19403Z Brassica rapa HOM05D002901 ORTHO05D003183 2.1e-06 56.2 88 36.4
CSS0015596 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 2.1e-06 56.2 100 47.0
Aa31LG9G2730 Aethionema arabicum HOM05D005860 ORTHO05D006977 2.7e-06 55.8 96 32.3
ATR0609G011 Amborella trichopoda HOM05D005860 ORTHO05D006977 2.7e-06 55.8 95 35.8
SGA_v2.0_scaffold7G03541 Striga asiatica HOM05D005860 ORTHO05D006977 2.7e-06 55.8 66 42.4
AL4G42900 Arabidopsis lyrata HOM05D002901 ORTHO05D003183 3.6e-06 55.5 88 35.2
AT2G44020 Arabidopsis thaliana HOM05D002901 ORTHO05D003183 3.6e-06 55.5 88 35.2
Carub.0007s2760 Capsella rubella HOM05D005860 ORTHO05D006977 3.6e-06 55.5 64 39.1
DCAR_021767 Daucus carota HOM05D005860 ORTHO05D006977 3.6e-06 55.5 98 51.0
ECA234G1179 Erigeron canadensis HOM05D000093 ORTHO05D001309 3.6e-06 55.5 88 36.4
Thhalv10001406m.g Eutrema salsugineum HOM05D002901 ORTHO05D003183 3.6e-06 55.5 88 35.2
CSS0028734 Camellia sinensis var. sinensis HOM05D001557 ORTHO05D001299 4.7e-06 55.1 120 33.3
HPP92_024230 Vanilla planifolia HOM05D005860 ORTHO05D006977 4.7e-06 55.1 104 29.8
EL10Ac2g03279 Beta vulgaris HOM05D002901 ORTHO05D003183 6.1e-06 54.7 88 37.5
Peaxi162Scf00901g00035 Petunia axillaris HOM05D002901 ORTHO05D003183 8.0e-06 54.3 88 35.2
Sp4g26110 Schrenkiella parvula HOM05D002901 ORTHO05D003183 8.0e-06 54.3 88 35.2
Zm00001eb192920 Zea mays HOM05D002901 ORTHO05D003183 8.0e-06 54.3 88 37.5


User provided reference genes

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