Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 2563.9 1321 100.0
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1942.5 1370 78.3
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1333 78.5
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1875.9 1324 77.9
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1872.4 1325 77.3
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1867.8 1327 76.8
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1862.4 1330 76.1
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1850.5 1337 75.3
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1846.2 1334 75.3
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1845.5 1334 75.2
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1841.6 1332 75.2
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1838.9 1336 74.6
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1835.5 1329 75.3
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1833.5 1326 75.0
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1832.4 1325 74.8
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1828.5 1326 75.0
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1827.0 1326 74.6
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1825.8 1336 74.3
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1825.1 1326 74.6
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1824.7 1376 72.7
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1820.1 1336 73.6
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1819.7 1341 74.6
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1817.7 1338 74.3
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1813.9 1324 72.8
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1813.1 1327 73.9
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1812.0 1328 73.2
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1811.2 1336 73.8
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1808.9 1328 74.0
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1808.1 1329 74.1
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1807.7 1333 73.9
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1807.0 1324 72.8
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1801.6 1333 73.4
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1800.8 1324 73.3
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1800.0 1340 73.4
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1800.0 1331 74.0
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1799.3 1325 73.2
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1797.7 1326 72.4
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1797.3 1324 72.9
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1796.9 1324 73.5
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1795.4 1365 71.5
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1794.6 1321 74.3
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1794.6 1331 73.3
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1792.7 1329 73.2
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1792.7 1326 72.9
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1792.3 1330 73.4
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1790.4 1333 72.5
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1790.0 1332 73.3
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1788.9 1332 73.3
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1787.3 1326 72.5
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1786.9 1326 73.1
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1786.5 1328 73.0
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1786.5 1332 73.2
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1780.0 1332 73.0
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1774.6 1329 72.7
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1774.2 1336 72.0
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1772.7 1329 72.6
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1770.4 1328 72.1
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1768.1 1333 72.4
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1768.1 1334 72.0
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1766.5 1328 71.8
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1766.1 1258 74.8
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1765.0 1326 72.0
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1765.0 1330 72.1
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1764.6 1332 72.3
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1764.2 1341 71.5
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1759.6 1337 71.4
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1758.4 1324 71.0
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1755.7 1344 71.2
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1747.6 1340 71.3
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1744.2 1329 71.4
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1740.7 1334 71.3
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1734.2 1332 71.4
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1731.8 1320 72.2
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1730.7 1335 70.6
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1723.4 1325 70.9
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1721.1 1328 70.5
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1718.4 1328 70.6
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1717.6 1292 72.8
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1717.2 1323 70.7
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1716.8 1335 70.3
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1716.8 1327 70.6
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1716.8 1327 70.6
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1716.0 1327 70.3
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1711.4 1335 70.1
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1711.4 1323 70.6
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1706.0 1346 69.6
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1691.0 1342 69.7
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1683.7 1325 68.0
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1682.9 1259 71.1
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1670.6 1331 70.2
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1661.7 1341 68.7
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1623.2 1333 64.8
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1589.3 1315 66.4
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1573.1 1324 64.9
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1546.2 1337 63.0
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1526.1 1159 71.8
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1481.1 1323 60.2
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1480.7 1329 60.3
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1439.5 1314 63.3
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1428.7 1102 70.5
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1376.3 856 84.0
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1330.9 848 81.1
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1321.6 1320 54.7
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1318.1 1321 55.9
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1298.1 808 82.9
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1285.4 1323 54.4
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1272.7 1324 53.9
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1257.7 1340 53.5
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1214.1 800 78.1
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1139.8 698 85.1
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1078.9 946 62.6
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 6.4e-292 1008.1 577 91.2
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 2.6e-285 986.1 1081 50.5
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 7.4e-280 968.0 795 66.9
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 6.0e-274 948.3 599 82.6
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 6.9e-270 934.9 544 87.7
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 6.5e-268 928.3 1355 40.3
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 4.4e-256 889.0 818 61.6
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 8.5e-236 821.6 673 66.3
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.5e-235 820.8 754 61.9
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 3.7e-215 753.1 681 60.4
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 7.3e-195 685.6 468 73.9
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 6.0e-181 639.4 603 62.4
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 1.9e-171 607.8 575 63.0
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 4.6e-149 533.5 357 79.0
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 6.3e-130 469.9 509 56.4
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 1.3e-111 409.1 377 55.2
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 5.4e-97 360.5 386 54.1
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 2.4e-89 335.1 195 86.2
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 1.8e-60 239.2 168 77.4
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 2.7e-48 198.7 144 76.4
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 9.0e-44 183.7 117 84.6
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 9.0e-36 157.1 102 82.4
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 5.9e-35 154.5 108 77.8
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 6.5e-34 151.0 96 84.4
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 2.5e-33 149.1 87 86.2
vmacro13309 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 8.2e-21 107.5 57 87.7
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 1.1e-20 107.1 187 39.0
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.0e-18 100.5 110 50.0
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.7e-18 99.8 82 61.0
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 3.9e-15 88.6 97 69.1
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 5.2e-15 88.2 52 80.8
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 8.8e-15 87.4 51 84.3
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.1e-14 87.0 51 84.3
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 2.0e-14 86.3 97 54.6
vmacro16783 Vaccinium macrocarpon HOM05D000641 ORTHO05D000944 1.2e-11 77.0 61 63.9
vmacro06073 Vaccinium macrocarpon HOM05D000331 ORTHO05D021523 1.2e-08 67.0 75 53.3
vmacro16718 Vaccinium macrocarpon HOM05D006563 ORTHO05D008154 1.2e-08 67.0 45 68.9
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.1e-08 66.2 40 75.0
vmacro18579 Vaccinium macrocarpon HOM05D003001 ORTHO05D003494 3.6e-08 65.5 37 78.4
vmacro04727 Vaccinium macrocarpon HOM05D000101 ORTHO05D000089 4.7e-08 65.1 42 69.0
vmacro06010 Vaccinium macrocarpon HOM05D000809 ORTHO05D001196 4.7e-08 65.1 40 75.0
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.0e-07 63.9 34 82.4
vmacro03968 Vaccinium macrocarpon HOM05D000513 ORTHO05D003825 1.4e-07 63.5 39 79.5
vmacro08551 Vaccinium macrocarpon HOM05D000932 ORTHO05D000729 1.8e-07 63.2 30 93.3
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 2.3e-07 62.8 31 87.1
vmacro16026 Vaccinium macrocarpon HOM05D017964 ORTHO05D023176 2.3e-07 62.8 45 66.7
vmacro19454 Vaccinium macrocarpon HOM05D004852 ORTHO05D006128 3.0e-07 62.4 34 85.3
vmacro09699 Vaccinium macrocarpon HOM05D005193 ORTHO05D006316 4.0e-07 62.0 44 68.2
vmacro05063 Vaccinium macrocarpon HOM05D001419 ORTHO05D001376 6.8e-07 61.2 37 78.4
vmacro02294 Vaccinium macrocarpon HOM05D001373 ORTHO05D001330 1.5e-06 60.1 31 87.1
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 1.5e-06 60.1 30 90.0
vmacro16015 Vaccinium macrocarpon HOM05D005906 ORTHO05D007359 2.0e-06 59.7 31 87.1
vmacro17718 Vaccinium macrocarpon HOM05D003484 ORTHO05D004152 2.0e-06 59.7 33 84.8
vmacro02184 Vaccinium macrocarpon HOM05D001453 ORTHO05D001444 2.6e-06 59.3 32 84.4
vmacro11662 Vaccinium macrocarpon HOM05D001622 ORTHO05D002989 2.6e-06 59.3 31 83.9
vmacro13488 Vaccinium macrocarpon HOM05D002629 ORTHO05D003221 2.6e-06 59.3 32 84.4
vmacro05549 Vaccinium macrocarpon HOM05D003195 ORTHO05D003773 3.4e-06 58.9 55 56.4
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.7e-06 58.2 47 59.6
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.7e-06 58.2 50 56.0
vmacro07457 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 9.7e-06 57.4 33 75.8


User provided reference genes

Program Settings