Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 0.0e+00 1401.0 718 100.0
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 0.0e+00 1123.2 740 80.0
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 0.0e+00 1114.4 746 80.0
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 0.0e+00 1094.7 740 78.8
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 0.0e+00 1083.6 741 77.2
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 0.0e+00 1081.2 733 78.0
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 1.1e-301 1039.6 747 75.1
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 7.3e-298 1026.9 696 77.9
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 6.2e-297 1023.8 747 74.0
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 1.3e-291 1006.1 729 73.9
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 1.7e-291 1005.7 748 71.8
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 2.1e-289 998.8 746 71.6
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 5.2e-288 994.2 748 70.9
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.0e-287 992.3 725 73.7
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 4.4e-287 991.1 749 70.5
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 1.7e-286 989.2 743 70.7
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 2.2e-286 988.8 733 73.1
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 2.4e-285 985.3 753 70.7
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 5.4e-285 984.2 747 70.1
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 2.7e-284 981.9 746 69.6
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 3.0e-283 978.4 748 70.2
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 8.6e-283 976.9 732 73.1
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.8e-281 971.8 746 70.5
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 2.3e-280 968.8 745 69.3
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.2e-279 966.5 745 69.8
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 1.5e-279 966.1 758 68.9
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 1.5e-279 966.1 743 69.2
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 8.4e-278 960.3 744 70.0
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.9e-277 959.1 743 68.8
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 2.4e-277 958.7 747 69.5
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 9.2e-277 956.8 731 69.1
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.6e-276 956.1 743 68.6
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 2.1e-276 955.7 787 68.2
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 2.7e-276 955.3 717 70.6
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 5.1e-275 951.0 750 68.9
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 6.6e-275 950.7 761 67.4
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 8.6e-275 950.3 761 67.3
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 1.5e-274 949.5 752 69.7
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 1.5e-274 949.5 742 69.3
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 3.3e-274 948.3 741 69.2
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 9.6e-274 946.8 746 68.8
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 2.8e-273 945.3 740 69.6
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 2.8e-273 945.3 727 69.7
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 6.2e-273 944.1 743 70.0
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 8.1e-273 943.7 746 68.4
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 8.1e-273 943.7 742 69.5
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 1.4e-272 943.0 748 68.3
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 1.8e-272 942.6 746 68.6
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 4.0e-272 941.4 741 69.8
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 5.2e-272 941.0 742 69.9
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 5.2e-272 941.0 741 69.4
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 1.2e-271 939.9 752 68.8
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.2e-271 939.9 751 68.2
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 2.6e-271 938.7 744 68.5
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 1.7e-270 936.0 750 68.3
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 6.4e-270 934.1 743 67.2
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 8.4e-270 933.7 761 66.4
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 3.2e-269 931.8 722 69.7
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 5.4e-269 931.0 743 67.2
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 7.1e-269 930.6 749 67.4
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 9.3e-269 930.2 743 67.4
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 9.3e-269 930.2 737 68.9
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 2.7e-268 928.7 736 69.3
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 4.6e-268 927.9 743 68.2
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 4.6e-268 927.9 747 67.7
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.0e-267 925.2 743 66.9
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 6.6e-267 924.1 750 66.7
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 6.6e-267 924.1 747 66.9
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 2.5e-266 922.2 735 67.3
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 2.5e-266 922.2 740 68.9
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.6e-265 919.5 740 68.5
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 2.1e-265 919.1 746 66.9
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 2.8e-265 918.7 727 68.5
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.6e-265 918.3 746 68.2
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 3.6e-265 918.3 749 67.7
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 4.8e-265 917.9 742 67.3
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 9.0e-264 913.7 745 67.2
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 1.5e-263 912.9 748 66.6
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 4.4e-263 911.4 745 67.2
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 5.8e-263 911.0 747 67.5
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 9.9e-263 910.2 727 68.2
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 2.9e-262 908.7 746 66.1
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 3.8e-262 908.3 744 66.9
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 3.2e-261 905.2 747 66.0
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 5.4e-261 904.4 747 66.1
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 9.3e-261 903.7 751 67.0
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 1.0e-259 900.2 749 65.7
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 1.0e-259 900.2 747 65.5
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 1.7e-259 899.4 758 66.5
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 3.0e-259 898.7 747 65.5
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 5.1e-259 897.9 745 66.3
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 1.5e-258 896.3 784 64.0
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.9e-258 896.0 732 67.8
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 1.9e-258 896.0 751 66.3
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 9.6e-258 893.6 772 64.6
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 2.1e-257 892.5 746 65.3
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 2.1e-257 892.5 727 67.4
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 3.6e-257 891.7 747 64.9
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 1.4e-256 889.8 747 64.8
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 1.8e-256 889.4 749 64.9
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 1.8e-256 889.4 715 67.8
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 2.4e-256 889.0 744 66.5
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 2.4e-256 889.0 750 65.9
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 4.0e-256 888.3 739 65.1
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 9.9e-255 883.6 746 64.7
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 9.9e-255 883.6 747 66.1
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.7e-254 882.9 725 67.0
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.7e-254 882.9 725 67.0
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 4.9e-254 881.3 732 66.8
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 1.9e-253 879.4 746 64.7
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 3.2e-253 878.6 746 64.7
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 4.2e-253 878.2 724 67.7
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 9.3e-253 877.1 744 64.8
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 2.7e-252 875.5 723 66.5
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 7.9e-252 874.0 730 67.1
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 1.0e-251 873.6 746 64.3
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 1.4e-248 863.2 754 63.3
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 4.0e-248 861.7 732 64.9
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 9.0e-248 860.5 727 66.0
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 1.3e-246 856.7 744 63.8
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 1.3e-246 856.7 712 66.7
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 3.2e-245 852.0 729 65.2
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 1.2e-244 850.1 739 63.1
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 5.9e-239 831.2 776 61.5
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.1e-234 817.0 695 65.8
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.5e-234 816.6 744 62.9
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 3.7e-233 812.0 747 63.3
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 6.9e-232 807.7 750 60.3
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 2.9e-222 775.8 801 58.2
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 6.5e-222 774.6 736 60.6
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.4e-221 773.5 550 73.5
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 4.2e-213 745.3 706 61.2
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 1.3e-209 733.8 724 57.9
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 1.2e-207 727.2 725 59.3
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 1.6e-207 726.9 748 55.9
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 9.5e-197 691.0 440 80.9
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 3.6e-188 662.5 762 53.0
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 6.4e-185 651.7 722 52.5
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 6.6e-174 615.1 557 63.0
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 4.7e-172 609.0 675 54.4
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 3.3e-157 559.7 372 77.4
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 9.6e-141 505.0 715 44.3
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 6.0e-127 459.1 303 77.9
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 1.0e-126 458.4 434 59.4
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 6.7e-126 455.7 615 45.9
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 6.1e-119 432.6 742 39.5
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 6.1e-119 432.6 742 39.5
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 8.7e-118 428.7 498 49.8
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.5e-117 427.2 608 44.6
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 2.5e-112 410.6 453 55.8
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 1.5e-101 374.8 387 55.6
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 8.5e-97 359.0 309 66.3
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 1.2e-90 338.6 258 70.5
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 6.5e-89 332.8 572 39.2
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 2.0e-85 321.2 282 62.1
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 9.1e-83 312.4 184 87.5
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 9.8e-77 292.4 353 50.7
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 5.2e-62 243.4 403 40.0
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.3e-57 228.8 572 34.3
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 1.2e-53 215.7 455 35.6
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 3.0e-49 201.1 613 29.7
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 4.4e-45 187.2 590 32.0
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 1.3e-44 185.7 226 52.2
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 2.6e-37 161.4 110 71.8
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 2.9e-36 157.9 157 58.0
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 2.1e-34 151.8 122 64.8
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 5.3e-30 137.1 95 71.6
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 2.0e-29 135.2 95 70.5
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 3.4e-29 134.4 76 89.5
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 7.6e-29 133.3 218 45.0
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 8.4e-28 129.8 174 44.3
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 1.9e-27 128.6 72 80.6
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 1.9e-27 128.6 72 80.6
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 3.0e-25 121.3 72 79.2
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 3.8e-20 104.4 294 30.3
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 1.3e-17 95.9 51 86.3
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 3.0e-17 94.7 60 70.0
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 5.1e-17 94.0 270 31.9
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 1.9e-16 92.0 50 86.0
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 2.8e-15 88.2 60 66.7
Hma1.2p1_0006F.1_g004670 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.1e-14 86.3 221 33.0
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 2.2e-12 78.6 85 51.8
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 3.8e-12 77.8 84 53.6
ECA247G3396 Erigeron canadensis HOM05D003681 ORTHO05D004703 4.9e-12 77.4 55 67.3
VMungo1127G0394 Vigna mungo HOM05D003681 ORTHO05D004703 5.7e-08 63.9 84 42.9


User provided reference genes

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