Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1619.8 844 100.0
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1303.5 869 81.5
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1219.1 853 76.6
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1210.7 845 76.9
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1209.1 842 75.8
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1200.3 846 74.2
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1181.4 850 73.3
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1173.7 849 73.4
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1172.9 849 73.3
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1172.1 845 73.5
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1171.0 847 73.6
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1168.3 854 72.1
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1166.4 846 72.2
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1164.4 845 72.4
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1162.5 838 72.0
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1162.1 851 72.7
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1159.4 846 73.8
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1156.4 851 72.7
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1152.1 843 71.6
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1151.3 848 71.8
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1148.7 846 71.6
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1145.6 848 72.5
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1143.3 849 71.6
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1141.3 848 72.4
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1140.2 827 72.9
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1139.0 848 72.2
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1133.2 847 72.4
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1131.7 847 71.1
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1131.3 844 70.9
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1129.4 846 72.0
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1127.9 838 72.2
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1127.1 838 72.0
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1127.1 837 72.0
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1127.1 837 72.2
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1124.4 841 71.1
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1120.5 838 71.6
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1120.1 840 71.3
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1117.8 845 70.4
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1117.4 921 66.8
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1117.1 842 70.8
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1117.1 837 71.0
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1117.1 843 70.5
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1113.6 844 70.6
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1108.2 838 71.2
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1108.2 844 70.5
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1108.2 844 70.0
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 0.0e+00 1107.4 843 69.9
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1107.0 843 69.9
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1105.9 855 69.7
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1104.7 838 69.1
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1104.0 890 68.2
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1100.5 802 72.6
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1100.5 838 70.5
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1100.5 846 70.0
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1097.4 847 69.8
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 0.0e+00 1095.9 835 69.1
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1095.1 844 69.2
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 0.0e+00 1094.3 843 69.5
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1094.3 842 69.0
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1092.0 845 68.8
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 0.0e+00 1089.3 852 67.8
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 0.0e+00 1088.9 841 68.5
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1088.2 846 68.7
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1087.0 844 68.8
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1087.0 844 68.8
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1083.2 844 69.1
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 0.0e+00 1083.2 943 64.9
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 0.0e+00 1082.4 846 69.3
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 0.0e+00 1079.7 839 70.2
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 0.0e+00 1077.8 843 68.2
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1077.4 835 68.7
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1077.0 827 69.3
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 0.0e+00 1076.6 847 67.9
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 0.0e+00 1076.6 841 68.6
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 5.8e-312 1073.9 832 69.5
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.7e-311 1072.4 844 67.8
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 2.3e-311 1072.0 849 68.0
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-308 1063.1 833 68.8
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 7.0e-308 1060.4 843 66.9
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 1.6e-307 1059.3 863 67.4
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 3.5e-307 1058.1 832 68.3
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 3.5e-307 1058.1 832 68.3
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 7.7e-307 1057.0 832 68.3
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 1.3e-306 1056.2 832 68.3
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 1.3e-306 1056.2 832 68.3
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 9.4e-305 1050.0 846 67.1
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 9.4e-305 1050.0 840 67.1
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.6e-304 1049.3 800 69.9
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 4.7e-304 1047.7 833 67.6
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 7.0e-300 1033.9 687 77.0
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 4.5e-299 1031.2 687 77.4
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 5.0e-298 1027.7 687 77.3
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 1.8e-295 1019.2 849 65.1
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 2.2e-293 1012.3 832 66.2
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 5.4e-292 1007.7 838 65.9
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 3.8e-290 1001.5 847 64.5
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 2.5e-289 998.8 843 65.1
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.6e-283 979.5 834 64.9
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 5.9e-283 977.6 840 63.5
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 5.0e-282 974.5 832 64.2
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.0e-279 966.8 721 74.3
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 2.6e-278 962.2 886 60.2
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 1.1e-276 956.8 832 63.9
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 8.6e-274 947.2 833 63.1
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 7.1e-268 927.5 835 62.5
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.9e-265 919.5 851 58.8
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 1.3e-261 906.7 834 62.0
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 9.6e-257 890.6 836 59.1
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 2.2e-253 879.4 858 56.8
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 2.9e-253 879.0 868 57.5
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.6e-242 841.3 848 55.1
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 4.0e-231 805.4 659 65.4
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 5.8e-230 801.6 480 86.2
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 7.9e-227 791.2 677 63.5
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 5.0e-205 718.8 844 48.5
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.3e-192 677.6 887 46.6
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.3e-192 677.6 887 46.6
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 5.2e-186 655.6 895 44.6
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.9e-176 622.5 884 43.7
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 4.1e-175 619.4 661 54.2
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 8.6e-173 611.7 532 63.3
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.3e-164 583.2 695 48.2
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 4.7e-163 579.3 499 61.5
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 9.8e-161 571.6 875 41.9
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 7.0e-159 565.5 590 54.4
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 1.1e-156 558.1 474 62.4
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 2.6e-137 493.8 410 65.4
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 9.0e-114 415.6 613 46.3
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 1.2e-97 362.1 656 40.1
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 9.1e-90 335.9 213 81.7
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 2.4e-74 284.6 291 58.1
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 9.1e-74 282.7 809 30.4
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 2.9e-72 277.7 247 60.7
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 2.3e-69 268.1 237 60.8
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 4.0e-69 267.3 237 60.8
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 4.0e-69 267.3 237 60.8
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 1.3e-64 252.3 251 56.2
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 2.3e-61 241.5 485 39.0
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 4.0e-61 240.7 239 56.5
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 5.4e-58 230.3 508 35.4
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 6.8e-53 213.4 131 83.2
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 8.0e-46 189.9 161 59.0
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 6.0e-41 173.7 88 85.2
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 6.0e-41 173.7 88 85.2
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.0e-40 172.9 206 50.5
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 2.3e-37 161.8 852 25.7
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 8.9e-37 159.8 89 79.8
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.1e-33 148.7 352 33.0
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.1e-30 136.7 121 61.2
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 3.2e-26 124.8 191 40.3
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 3.9e-24 117.9 88 58.0
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 2.1e-22 112.1 75 80.0
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 5.2e-21 107.5 71 67.6
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.0e-20 105.5 108 51.9
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 9.3e-18 96.7 118 51.7
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 2.1e-17 95.5 56 87.5
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.8e-17 93.6 85 56.5
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.7e-16 92.4 146 38.4
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.1e-16 90.9 145 46.9
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 2.5e-15 88.6 57 66.7
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 3.3e-15 88.2 114 43.0
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 9.0e-13 80.1 77 54.5
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.5e-12 79.3 77 54.5
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 5.8e-12 77.4 53 83.0
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 3.2e-10 71.6 52 78.8
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 1.6e-09 69.3 51 76.5
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 7.9e-09 67.0 76 55.3
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.9e-09 67.0 248 29.0
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 1.8e-08 65.9 48 75.0
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 4.8e-06 57.8 117 36.8
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 8.1e-06 57.0 122 40.2


User provided reference genes

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