Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18052 Vaccinium macrocarpon HOM05D002075 ORTHO05D001225 2.9e-55 218.4 114 100.0
Rhsim07G0250200 Rhododendron simsii HOM05D000212 ORTHO05D001225 7.3e-19 97.4 111 53.2
DCAR_009502 Daucus carota HOM05D002075 ORTHO05D001225 6.7e-12 74.3 99 43.4
DCAR_022940 Daucus carota HOM05D002075 ORTHO05D001225 1.5e-11 73.2 99 45.5
Actinidia37942 Actinidia chinensis HOM05D002075 ORTHO05D001225 3.3e-11 72.0 106 46.2
Lj4C18T15 Lonicera japonica HOM05D002075 ORTHO05D001225 3.3e-11 72.0 99 46.5
Rhsim06G0015200 Rhododendron simsii HOM05D002075 ORTHO05D001225 1.3e-10 70.1 106 41.5
Rhsim06G0017500 Rhododendron simsii HOM05D002075 ORTHO05D001225 1.3e-10 70.1 106 41.5
TWI36G1394 Tripterygium wilfordii HOM05D002075 ORTHO05D001225 2.1e-10 69.3 103 42.7
Dinv39548 Davidia involucrata HOM05D002075 ORTHO05D001225 3.6e-10 68.6 105 42.9
MSTRG.24232 Avicennia marina HOM05D002075 ORTHO05D001225 6.2e-10 67.8 99 42.4
Oeu013877.1 Olea europaea HOM05D002075 ORTHO05D001225 6.2e-10 67.8 99 42.4
Lalb_Chr01g0008531 Lupinus albus HOM05D002075 ORTHO05D001225 1.1e-09 67.0 99 39.4
CiPaw.08G068700 Carya illinoinensis HOM05D002075 ORTHO05D001225 1.4e-09 66.6 103 39.8
TWI56G0379 Tripterygium wilfordii HOM05D002075 ORTHO05D001225 1.4e-09 66.6 103 40.8
CSS0001279 Camellia sinensis var. sinensis HOM05D002075 ORTHO05D001225 1.8e-09 66.2 106 41.5
CSS0006693 Camellia sinensis var. sinensis HOM05D002075 ORTHO05D001225 1.8e-09 66.2 106 41.5
CANSAT25G2407 Cannabis sativa HOM05D002075 ORTHO05D001225 3.1e-09 65.5 102 39.2
Psat5g012600 Pisum sativum HOM05D002075 ORTHO05D001225 3.1e-09 65.5 98 39.8
QL02p012558 Quercus lobata HOM05D002075 ORTHO05D001225 3.1e-09 65.5 100 38.0
SalBow6G4923 Salvia bowleyana HOM05D002075 ORTHO05D001225 3.1e-09 65.5 99 40.4
arahy.Tifrunner.gnm1.ann1.RCM2J0 Arachis hypogaea HOM05D002075 ORTHO05D001225 4.0e-09 65.1 104 38.5
Glyma.04G021800 Glycine max HOM05D002075 ORTHO05D001225 4.0e-09 65.1 103 37.9
Psat6g001480 Pisum sativum HOM05D002075 ORTHO05D001225 4.0e-09 65.1 99 37.4
SGA_v2.0_scaffold19G08571 Striga asiatica HOM05D002075 ORTHO05D001225 5.3e-09 64.7 100 42.0
Actinidia29760 Actinidia chinensis HOM05D002075 ORTHO05D001225 6.9e-09 64.3 106 42.5
CiPaw.07G145000 Carya illinoinensis HOM05D002075 ORTHO05D001225 9.0e-09 63.9 98 40.8
Haze_22682 Corylus avellana HOM05D002075 ORTHO05D001225 9.0e-09 63.9 110 38.2
Psat6g001560 Pisum sativum HOM05D002075 ORTHO05D001225 1.2e-08 63.5 99 36.4
Lj5g0014812 Lotus japonicus HOM05D002075 ORTHO05D001225 1.5e-08 63.2 98 40.8
TPR.G38228 Trifolium pratense HOM05D002075 ORTHO05D001225 1.5e-08 63.2 98 38.8
Sabra05G0188700 Salix brachista HOM05D002075 ORTHO05D001225 2.6e-08 62.4 100 41.0
MD08G1009100 Malus domestica HOM05D002075 ORTHO05D001225 3.4e-08 62.0 99 41.4
Potri.002G018200 Populus trichocarpa HOM05D002075 ORTHO05D001225 4.5e-08 61.6 66 50.0
Potri.005G243800 Populus trichocarpa HOM05D002075 ORTHO05D001225 4.5e-08 61.6 106 38.7
Sed0003571 Sechium edule HOM05D002075 ORTHO05D001225 4.5e-08 61.6 99 37.4
Ca_15474_v3 Cicer arietinum L. HOM05D002075 ORTHO05D001225 5.8e-08 61.2 100 41.0
Medtr8g068520 Medicago truncatula HOM05D002075 ORTHO05D001225 7.6e-08 60.8 98 34.7
VMungo0647G0014 Vigna mungo HOM05D002075 ORTHO05D001225 9.9e-08 60.5 98 38.8
Cfa013992 Carpinus fangiana HOM05D002075 ORTHO05D001225 1.3e-07 60.1 99 36.4
Hma1.2p1_0023F.1_g015730 Hydrangea macrophylla HOM05D002075 ORTHO05D001225 1.3e-07 60.1 100 39.0
Ca_13479_v3 Cicer arietinum L. HOM05D002075 ORTHO05D001225 1.7e-07 59.7 99 35.4
Prupe.1G360800 Prunus persica HOM05D002075 ORTHO05D001225 1.7e-07 59.7 99 37.4
MD03G1275300 Malus domestica HOM05D002075 ORTHO05D001225 2.2e-07 59.3 99 39.4
Peaxi162Scf00860g00023 Petunia axillaris HOM05D002075 ORTHO05D001225 2.2e-07 59.3 99 37.4
Ciclev10003990m.g Citrus clementina HOM05D002075 ORTHO05D001225 2.9e-07 58.9 105 37.1
Glyma.14G221300 Glycine max HOM05D002075 ORTHO05D001225 2.9e-07 58.9 99 39.4
Gorai.009G192300 Gossypium raimondii HOM05D002075 ORTHO05D001225 2.9e-07 58.9 102 40.2
RcHm_v2.0_Chr6g0303541 Rosa chinensis HOM05D002075 ORTHO05D001225 2.9e-07 58.9 98 35.7
ClCG08G014090 Citrullus lanatus HOM05D002075 ORTHO05D001225 4.9e-07 58.2 99 37.4
DCAR_016737 Daucus carota HOM05D002075 ORTHO05D001225 4.9e-07 58.2 99 40.4
Migut.C00886 Erythranthe guttata HOM05D002075 ORTHO05D001225 4.9e-07 58.2 98 36.7
FAN20G2259 Fragaria x ananassa HOM05D002075 ORTHO05D001225 4.9e-07 58.2 103 35.0
FAN27G3034 Fragaria x ananassa HOM05D002075 ORTHO05D001225 4.9e-07 58.2 103 35.0
Nitab4.5_0004361g0020 Nicotiana tabacum HOM05D002075 ORTHO05D001225 4.9e-07 58.2 99 37.4
FvH4_2g38050 Fragaria vesca HOM05D002075 ORTHO05D001225 6.4e-07 57.8 99 36.4
Gohir.A01G109500 Gossypium hirsutum HOM05D002075 ORTHO05D001225 6.4e-07 57.8 99 39.4
Gohir.A05G184300 Gossypium hirsutum HOM05D002075 ORTHO05D001225 6.4e-07 57.8 102 39.2
Gohir.D01G096300 Gossypium hirsutum HOM05D002075 ORTHO05D001225 6.4e-07 57.8 99 39.4
Gorai.002G121800 Gossypium raimondii HOM05D002075 ORTHO05D001225 6.4e-07 57.8 99 39.4
Nn5g30809 Nelumbo nucifera HOM05D002075 ORTHO05D001225 6.4e-07 57.8 105 36.2
Phvul.001G003900 Phaseolus vulgaris HOM05D002075 ORTHO05D001225 6.4e-07 57.8 98 37.8
Solyc04g081840.4 Solanum lycopersicum HOM05D002075 ORTHO05D001225 6.4e-07 57.8 99 36.4
Sopen04g035470 Solanum pennellii HOM05D002075 ORTHO05D001225 6.4e-07 57.8 99 36.4
PGSC0003DMG400043027 Solanum tuberosum HOM05D002075 ORTHO05D001225 6.4e-07 57.8 99 36.4
DCAR_027263 Daucus carota HOM05D002075 ORTHO05D001225 8.4e-07 57.4 99 40.4
Medtr3g114460 Medicago truncatula HOM05D002075 ORTHO05D001225 8.4e-07 57.4 98 36.7
Gohir.D05G187100 Gossypium hirsutum HOM05D002075 ORTHO05D001225 1.1e-06 57.0 99 39.4
SGA_v2.0_scaffold145G36081 Striga asiatica HOM05D000258 ORTHO05D000153 1.9e-06 56.2 47 53.2
Lj1g0006105 Lotus japonicus HOM05D002075 ORTHO05D001225 2.4e-06 55.8 98 35.7
Sabra02G0014500 Salix brachista HOM05D002075 ORTHO05D001225 2.4e-06 55.8 61 50.8
Thecc.08G049300 Theobroma cacao HOM05D002075 ORTHO05D001225 2.4e-06 55.8 102 37.3
Dinv31882 Davidia involucrata HOM05D000258 ORTHO05D001225 3.2e-06 55.5 96 40.6
MBI08_g03688_MAGBIO Magnolia biondii HOM05D002075 ORTHO05D001225 3.2e-06 55.5 100 36.0
Manes.05G144000 Manihot esculenta HOM05D002075 ORTHO05D001225 3.2e-06 55.5 51 52.9
Medtr1g025960 Medicago truncatula HOM05D002075 ORTHO05D001225 3.2e-06 55.5 98 30.6
Glyma.17G260200 Glycine max HOM05D002075 ORTHO05D001225 4.2e-06 55.1 99 37.4
Lalb_Chr19g0131521 Lupinus albus HOM05D002075 ORTHO05D001225 4.2e-06 55.1 98 32.7
arahy.Tifrunner.gnm1.ann1.88AGAZ Arachis hypogaea HOM05D002075 ORTHO05D001225 5.5e-06 54.7 98 34.7
arahy.Tifrunner.gnm1.ann1.WN7XBE Arachis hypogaea HOM05D002075 ORTHO05D001225 5.5e-06 54.7 98 34.7
AUR62013913 Chenopodium quinoa HOM05D002075 ORTHO05D001225 5.5e-06 54.7 96 36.5
AUR62018278 Chenopodium quinoa HOM05D002075 ORTHO05D001225 5.5e-06 54.7 96 36.5
Nn4g23590 Nelumbo nucifera HOM05D002075 ORTHO05D001225 9.3e-06 53.9 64 43.8
Nn6g31946 Nelumbo nucifera HOM05D002075 ORTHO05D001225 9.3e-06 53.9 99 34.3


User provided reference genes

Program Settings