Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 4.0e-93 344.7 174 100.0
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.8e-69 266.2 174 78.2
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 8.0e-41 171.0 211 53.6
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 3.0e-40 169.1 211 53.1
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 8.2e-38 161.0 208 52.4
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.3e-35 153.7 198 51.5
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 4.2e-34 148.7 217 46.5
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 4.2e-34 148.7 200 49.0
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 5.5e-34 148.3 181 50.8
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.4e-32 143.7 199 50.8
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 6.8e-32 141.4 198 48.0
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 1.3e-30 137.1 211 44.5
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.7e-30 136.7 218 43.6
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.7e-30 136.7 179 47.5
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 8.3e-30 134.4 207 43.5
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 8.3e-30 134.4 218 44.5
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 1.1e-29 134.0 211 44.5
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.4e-29 133.7 220 43.6
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 3.1e-29 132.5 206 45.1
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 5.4e-29 131.7 206 45.1
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 7.0e-29 131.3 202 45.0
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 9.1e-29 131.0 139 57.6
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 9.1e-29 131.0 208 43.8
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.0e-28 129.8 209 43.5
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.0e-28 129.8 210 41.9
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 2.7e-28 129.4 214 43.5
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 4.5e-28 128.6 205 41.5
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 5.9e-28 128.3 180 47.2
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 6.5e-27 124.8 210 41.0
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 8.6e-27 124.4 187 47.1
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 8.6e-27 124.4 206 42.2
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 8.6e-27 124.4 198 44.9
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 1.1e-26 124.0 206 43.2
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 1.9e-26 123.2 211 41.7
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.9e-26 123.2 175 46.9
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 3.3e-26 122.5 217 44.2
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 4.2e-26 122.1 206 42.7
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 9.5e-26 120.9 224 40.6
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 1.2e-25 120.6 208 43.8
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 2.1e-25 119.8 215 42.3
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 2.1e-25 119.8 203 42.9
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 2.8e-25 119.4 194 44.8
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 3.6e-25 119.0 193 46.1
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 6.1e-25 118.2 203 43.3
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 6.1e-25 118.2 180 45.0
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 2.3e-24 116.3 205 45.9
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.3e-24 116.3 191 44.5
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 6.8e-24 114.8 190 44.2
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 8.9e-24 114.4 181 45.3
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 8.9e-24 114.4 181 45.3
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 1.2e-23 114.0 223 42.2
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 1.5e-23 113.6 203 42.9
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 2.6e-23 112.8 208 40.9
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 4.4e-23 112.1 216 40.7
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 9.8e-23 110.9 212 41.0
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.2e-22 109.8 200 40.0
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.8e-22 109.4 181 42.5
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 3.7e-22 109.0 202 39.1
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.9e-22 108.6 201 39.8
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 6.3e-22 108.2 217 37.8
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 8.3e-22 107.8 202 39.6
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 8.3e-22 107.8 205 41.5
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 1.1e-21 107.5 189 40.7
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 1.1e-21 107.5 184 46.7
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 1.4e-21 107.1 187 46.5
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 1.4e-21 107.1 187 46.5
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 1.8e-21 106.7 188 41.5
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 4.1e-21 105.5 211 37.9
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 7.0e-21 104.8 200 40.5
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 7.0e-21 104.8 205 41.0
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 9.2e-21 104.4 216 39.4
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 9.2e-21 104.4 194 35.6
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.2e-20 104.0 197 39.6
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 1.2e-20 104.0 217 38.2
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 2.0e-20 103.2 203 40.4
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 3.5e-20 102.4 127 52.0
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.5e-20 102.4 181 39.8
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 3.5e-20 102.4 228 37.3
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 3.5e-20 102.4 214 37.4
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 4.5e-20 102.1 216 38.0
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.0e-19 100.9 174 39.1
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.7e-19 100.1 196 38.8
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 1.7e-19 100.1 224 38.4
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 2.3e-19 99.8 196 39.3
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.3e-19 99.8 203 36.0
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 2.9e-19 99.4 212 37.3
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.9e-19 99.4 187 41.2
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 2.9e-19 99.4 188 39.9
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.8e-19 99.0 190 41.1
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.8e-19 99.0 181 40.3
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 5.0e-19 98.6 206 37.4
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 5.0e-19 98.6 236 35.6
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 1.9e-18 96.7 205 36.6
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 2.5e-18 96.3 144 45.8
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 4.3e-18 95.5 198 42.9
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 7.3e-18 94.7 209 38.8
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 7.3e-18 94.7 114 51.8
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 2.1e-17 93.2 128 44.5
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 2.8e-17 92.8 174 40.8
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 4.7e-17 92.0 201 37.8
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 6.1e-17 91.7 194 40.2
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 8.0e-17 91.3 213 34.7
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.4e-16 90.5 195 37.9
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.4e-16 90.5 179 39.7
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 3.0e-16 89.4 234 34.6
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 5.2e-16 88.6 194 38.1
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 5.2e-16 88.6 192 35.9
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 8.9e-16 87.8 195 37.4
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 8.9e-16 87.8 176 39.8
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 1.5e-15 87.0 193 37.3
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 1.5e-15 87.0 193 37.3
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 2.6e-15 86.3 183 36.6
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 2.6e-15 86.3 192 36.5
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 2.6e-15 86.3 192 36.5
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 2.6e-15 86.3 192 36.5
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.4e-15 85.9 125 42.4
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 5.8e-15 85.1 138 44.9
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 5.8e-15 85.1 197 40.6
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.3e-14 84.0 174 36.8
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.7e-14 83.6 197 38.6
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 2.2e-14 83.2 189 36.5
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 2.9e-14 82.8 124 46.0
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 4.9e-14 82.0 226 32.3
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 8.3e-14 81.3 184 37.0
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 8.3e-14 81.3 143 42.0
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.1e-13 80.9 104 47.1
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.4e-13 80.5 197 38.1
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 1.8e-13 80.1 179 35.8
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.4e-13 79.7 112 44.6
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 3.2e-13 79.3 92 50.0
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 4.1e-13 79.0 101 48.5
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 4.1e-13 79.0 102 49.0
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 5.4e-13 78.6 99 48.5
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 7.0e-13 78.2 121 44.6
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 9.2e-13 77.8 112 43.8
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 9.2e-13 77.8 112 43.8
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 1.2e-12 77.4 101 48.5
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 1.2e-12 77.4 101 48.5
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 2.7e-12 76.3 113 46.9
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 6.0e-12 75.1 111 43.2
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 6.0e-12 75.1 111 43.2
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 6.0e-12 75.1 184 35.3
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.3e-11 73.9 156 42.3
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.3e-11 73.9 189 37.6
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 1.7e-11 73.6 208 33.2
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 3.0e-11 72.8 205 34.6
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 3.9e-11 72.4 111 42.3
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 5.0e-11 72.0 159 35.2
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.1e-10 70.9 118 43.2
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 1.5e-10 70.5 170 32.9
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 1.5e-10 70.5 102 43.1
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 4.3e-10 68.9 94 47.9
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 4.3e-10 68.9 178 30.9
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 5.6e-10 68.6 145 39.3
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 7.3e-10 68.2 235 30.6
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 7.3e-10 68.2 179 32.4
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 9.5e-10 67.8 179 31.8
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 9.5e-10 67.8 170 35.9
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 1.4e-08 63.9 187 33.7
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.8e-08 63.5 48 64.6
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 3.1e-08 62.8 46 63.0
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.1e-08 62.8 119 41.2
Nitab4.5_0000651g0050 Nicotiana tabacum HOM05D004032 ORTHO05D004462 4.0e-08 62.4 106 43.4
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 5.2e-08 62.0 184 29.3
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 2.0e-07 60.1 58 53.4
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.6e-07 59.7 49 59.2
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 1.3e-06 57.4 213 28.2
arahy.Tifrunner.gnm1.ann1.PQMP7V Arachis hypogaea HOM05D001536 ORTHO05D001442 4.9e-06 55.5 42 57.1
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 4.9e-06 55.5 179 31.8
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.9e-06 55.5 204 30.9
Aqoxy3G03549 Aquilegia oxysepala HOM05D001536 ORTHO05D001442 8.3e-06 54.7 54 53.7
AL2G28470 Arabidopsis lyrata HOM05D001536 ORTHO05D001442 8.3e-06 54.7 53 50.9
Solyc04g005500.3 Solanum lycopersicum HOM05D001536 ORTHO05D001442 8.3e-06 54.7 45 57.8
Sopen04g001520 Solanum pennellii HOM05D001536 ORTHO05D001442 8.3e-06 54.7 45 57.8
PGSC0003DMG400002849 Solanum tuberosum HOM05D001536 ORTHO05D001442 8.3e-06 54.7 45 57.8
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 8.3e-06 54.7 48 56.2


User provided reference genes

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