Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17935 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 0.0e+00 2078.1 1078 100.0
Rhsim08G0102200 Rhododendron simsii HOM05D003435 ORTHO05D004032 0.0e+00 1806.6 1044 90.3
Actinidia16507 Actinidia chinensis HOM05D003435 ORTHO05D004032 0.0e+00 1706.0 1059 84.0
CSS0011380 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 0.0e+00 1662.5 1050 83.7
CSS0024619 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 0.0e+00 1662.5 1050 83.7
Oeu049304.1 Olea europaea HOM05D003435 ORTHO05D004032 0.0e+00 1564.7 1051 78.1
Prupe.7G136400 Prunus persica HOM05D003435 ORTHO05D004032 0.0e+00 1562.4 1046 78.3
Nitab4.5_0000961g0120 Nicotiana tabacum HOM05D003435 ORTHO05D004032 0.0e+00 1562.0 1062 78.0
Solyc02g090570.4 Solanum lycopersicum HOM05D003435 ORTHO05D004032 0.0e+00 1558.5 1058 77.6
Sopen02g035220 Solanum pennellii HOM05D003435 ORTHO05D004032 0.0e+00 1557.7 1068 77.1
Peaxi162Scf00916g00135 Petunia axillaris HOM05D003435 ORTHO05D004032 0.0e+00 1557.3 1062 77.5
Nitab4.5_0000310g0180 Nicotiana tabacum HOM05D003435 ORTHO05D004032 0.0e+00 1551.2 1092 76.1
Haze_15428 Corylus avellana HOM05D003435 ORTHO05D004032 0.0e+00 1549.3 1061 77.1
Cfa003996 Carpinus fangiana HOM05D003435 ORTHO05D004032 0.0e+00 1545.8 1051 77.2
TAR376G0307 Trochodendron aralioides HOM05D003435 ORTHO05D004032 0.0e+00 1545.4 1052 77.2
FvH4_1g15690 Fragaria vesca HOM05D003435 ORTHO05D004032 0.0e+00 1543.9 1045 76.8
Manes.13G126200 Manihot esculenta HOM05D003435 ORTHO05D004032 0.0e+00 1537.7 1051 77.3
FAN26G2684 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1536.5 1051 76.5
RcHm_v2.0_Chr2g0105001 Rosa chinensis HOM05D003435 ORTHO05D004032 0.0e+00 1535.0 1051 76.6
Potri.007G041000 Populus trichocarpa HOM05D003435 ORTHO05D004032 0.0e+00 1533.9 1052 77.5
FAN23G2700 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1526.1 1051 75.8
TAR381G0144 Trochodendron aralioides HOM05D003435 ORTHO05D004032 0.0e+00 1525.4 1060 75.8
MD02G1168900 Malus domestica HOM05D003435 ORTHO05D004032 0.0e+00 1520.4 1067 75.2
TWI53G0909 Tripterygium wilfordii HOM05D003435 ORTHO05D004032 0.0e+00 1519.2 1057 76.4
CAN.G836.66 Capsicum annuum HOM05D003435 ORTHO05D004032 0.0e+00 1518.8 1079 75.2
Duzib147G1293 Durio zibethinus HOM05D003435 ORTHO05D004032 0.0e+00 1514.2 1054 75.5
CANSAT01G2969 Cannabis sativa HOM05D003435 ORTHO05D004032 0.0e+00 1509.2 1050 75.5
CiPaw.01G021600 Carya illinoinensis HOM05D003435 ORTHO05D004032 0.0e+00 1508.8 1051 75.9
FAN28G0748 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1507.7 1065 75.0
Cc07_g05840 Coffea canephora HOM05D003435 ORTHO05D004032 0.0e+00 1503.8 1089 73.3
Manes.12G101600 Manihot esculenta HOM05D003435 ORTHO05D004032 0.0e+00 1496.1 1054 75.1
Thecc.01G052400 Theobroma cacao HOM05D003435 ORTHO05D004032 0.0e+00 1495.7 1055 75.0
Atru.chr3.398 Acer truncatum HOM05D003435 ORTHO05D004032 0.0e+00 1493.0 1054 76.4
CsaV3_2G016800 Cucumis sativus L. HOM05D003435 ORTHO05D004032 0.0e+00 1489.2 1055 75.6
Sc03g0001420 Simmondsia chinensis HOM05D003435 ORTHO05D004032 0.0e+00 1486.5 1062 74.9
Gorai.008G074500 Gossypium raimondii HOM05D003435 ORTHO05D004032 0.0e+00 1480.7 1055 74.7
Migut.H00454 Erythranthe guttata HOM05D003435 ORTHO05D004032 0.0e+00 1479.9 1049 74.6
Gohir.D12G088600 Gossypium hirsutum HOM05D003435 ORTHO05D004032 0.0e+00 1479.2 1055 74.7
Lj4C140G3 Lonicera japonica HOM05D003435 ORTHO05D004032 0.0e+00 1478.0 1048 75.0
MD15G1280900 Malus domestica HOM05D003435 ORTHO05D004032 0.0e+00 1476.5 1046 74.6
ECA232G3039 Erigeron canadensis HOM05D003435 ORTHO05D004032 0.0e+00 1471.4 1046 72.8
Ciclev10024690m.g Citrus clementina HOM05D003435 ORTHO05D004032 0.0e+00 1469.9 1053 74.5
HanXRQChr14g0430631 Helianthus annuus HOM05D003435 ORTHO05D004032 0.0e+00 1467.6 1053 72.2
PGR119G1381 Punica granatum HOM05D003435 ORTHO05D004032 0.0e+00 1460.3 1068 72.7
Sed0012547 Sechium edule HOM05D003435 ORTHO05D004032 0.0e+00 1460.3 1053 74.4
Gorai.007G211000 Gossypium raimondii HOM05D003435 ORTHO05D004032 0.0e+00 1458.0 1061 73.5
MSTRG.23766 Avicennia marina HOM05D003435 ORTHO05D004032 0.0e+00 1451.8 1097 71.3
Aqoxy6G01408_Aqoxy6G01409 Aquilegia oxysepala HOM05D003435 ORTHO05D004032 0.0e+00 1449.1 1052 73.3
DCAR_011292 Daucus carota HOM05D003435 ORTHO05D004032 0.0e+00 1448.7 1079 71.5
Sabra07G0036700 Salix brachista HOM05D003435 ORTHO05D004032 0.0e+00 1448.0 1050 74.2
Eucgr.F02662 Eucalyptus grandis HOM05D003435 ORTHO05D004032 0.0e+00 1442.9 1056 73.5
Eucgr.F01659 Eucalyptus grandis HOM05D003435 ORTHO05D004032 0.0e+00 1442.6 1056 73.6
Lj4g0022564 Lotus japonicus HOM05D003435 ORTHO05D004032 0.0e+00 1440.2 1047 72.4
Medtr8g079820 Medicago truncatula HOM05D003435 ORTHO05D004032 0.0e+00 1439.5 1049 71.5
Glyma.05G090500 Glycine max HOM05D003435 ORTHO05D004032 0.0e+00 1439.1 1051 71.6
Ca_22188_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 0.0e+00 1436.8 1050 71.8
Psat4g087800 Pisum sativum HOM05D003435 ORTHO05D004032 0.0e+00 1435.2 1050 71.8
Nn5g30194 Nelumbo nucifera HOM05D003435 ORTHO05D004032 0.0e+00 1432.2 1076 72.4
Thhalv10010058m.g Eutrema salsugineum HOM05D003435 ORTHO05D004032 0.0e+00 1427.5 1049 72.9
FAN19G0078 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1427.5 1065 71.9
Sp5g11620 Schrenkiella parvula HOM05D003435 ORTHO05D004032 0.0e+00 1426.4 1049 73.1
Glyma.17G176300 Glycine max HOM05D003435 ORTHO05D004032 0.0e+00 1424.8 1052 71.9
Gohir.D11G197100 Gossypium hirsutum HOM05D003435 ORTHO05D004032 0.0e+00 1419.1 1099 70.2
PSO675G6314 Papaver somniferum HOM05D003435 ORTHO05D004032 0.0e+00 1416.0 1056 72.3
AL5G30740 Arabidopsis lyrata HOM05D003435 ORTHO05D004032 0.0e+00 1415.6 1050 71.7
THA.LOC104819223 Tarenaya hassleriana HOM05D003435 ORTHO05D004032 0.0e+00 1415.2 1051 71.6
Carub.0005s1691 Capsella rubella HOM05D003435 ORTHO05D004032 0.0e+00 1412.9 1053 71.2
AT3G50590 Arabidopsis thaliana HOM05D003435 ORTHO05D004032 0.0e+00 1412.1 1050 72.0
Phvul.003G245800 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 0.0e+00 1408.3 1052 71.4
Gohir.A12G070200 Gossypium hirsutum HOM05D003435 ORTHO05D004032 0.0e+00 1407.5 1055 72.3
PSO541G5504 Papaver somniferum HOM05D003435 ORTHO05D004032 0.0e+00 1400.2 1055 71.5
Nn1g05856 Nelumbo nucifera HOM05D003435 ORTHO05D004032 0.0e+00 1390.6 1053 71.0
COL.COLO4_11380 Corchorus olitorius HOM05D003435 ORTHO05D004032 0.0e+00 1383.2 1052 71.2
CARHR160100 Cardamine hirsuta HOM05D003435 ORTHO05D004032 0.0e+00 1377.8 1058 69.6
C08p25650 Brassica napus HOM05D003435 ORTHO05D004032 0.0e+00 1377.5 1052 71.0
BcaC07g39520 Brassica carinata HOM05D003435 ORTHO05D004032 0.0e+00 1376.7 1052 71.0
A09p43620 Brassica napus HOM05D003435 ORTHO05D004032 0.0e+00 1376.3 1052 71.0
AUR62031680 Chenopodium quinoa HOM05D003435 ORTHO05D004032 0.0e+00 1374.0 1058 70.6
AUR62032563 Chenopodium quinoa HOM05D003435 ORTHO05D004032 0.0e+00 1369.0 1058 70.4
Glyma.01G184500 Glycine max HOM05D003435 ORTHO05D004032 0.0e+00 1367.8 1050 69.5
ClCG02G012690 Citrullus lanatus HOM05D003435 ORTHO05D004032 0.0e+00 1360.5 1334 59.4
BcaB01g00607 Brassica carinata HOM05D003435 ORTHO05D004032 0.0e+00 1357.4 1052 70.6
BolC8t50184H Brassica oleracea HOM05D003435 ORTHO05D004032 0.0e+00 1357.0 1094 68.3
BraA09t39823Z Brassica rapa HOM05D003435 ORTHO05D004032 0.0e+00 1355.5 1087 68.5
SalBow5G2384 Salvia bowleyana HOM05D003435 ORTHO05D004032 0.0e+00 1353.2 1048 70.9
arahy.Tifrunner.gnm1.ann1.IHL9QQ Arachis hypogaea HOM05D003435 ORTHO05D004032 0.0e+00 1345.9 1056 68.8
Aa31LG4G18760 Aethionema arabicum HOM05D003435 ORTHO05D004032 0.0e+00 1341.3 1063 68.5
SGA_v2.0_scaffold15G07262 Striga asiatica HOM05D003435 ORTHO05D004032 0.0e+00 1325.5 1066 68.8
EL10Ac2g02707 Beta vulgaris HOM05D003435 ORTHO05D004032 0.0e+00 1315.8 1059 68.6
Lsat_1_v5_gn_4_167420 Lactuca sativa HOM05D003435 ORTHO05D004032 0.0e+00 1315.8 1045 68.0
ATR0021G056 Amborella trichopoda HOM05D003435 ORTHO05D004032 0.0e+00 1286.2 1095 64.0
Psat2g165400 Pisum sativum HOM05D003435 ORTHO05D004032 0.0e+00 1277.3 1056 64.8
Zm00001eb051800 Zea mays HOM05D003435 ORTHO05D004032 0.0e+00 1261.1 1076 65.2
TPR.G31102 Trifolium pratense HOM05D003435 ORTHO05D004032 0.0e+00 1258.8 1082 63.6
Lj2g0013536 Lotus japonicus HOM05D003435 ORTHO05D004032 0.0e+00 1251.5 1100 62.8
Aa31LG1G15390 Aethionema arabicum HOM05D003435 ORTHO05D004032 0.0e+00 1245.3 1051 64.3
Cpa.g.sc6.378 Carica papaya HOM05D003435 ORTHO05D004032 0.0e+00 1225.7 959 69.9
HPP92_006187 Vanilla planifolia HOM05D003435 ORTHO05D004032 0.0e+00 1211.1 1065 61.8
Phvul.002G020500 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 0.0e+00 1187.6 887 69.6
Ca_24784_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 0.0e+00 1181.8 1091 60.8
Ah.10g029820 Amaranthus hybridus HOM05D003435 ORTHO05D004032 0.0e+00 1147.9 806 74.8
SEGI_22339 Sequoiadendron giganteum HOM05D003435 ORTHO05D004032 0.0e+00 1091.3 1081 56.4
HPP92_008982 Vanilla planifolia HOM05D003435 ORTHO05D004032 0.0e+00 1077.4 1052 57.2
Dinv39875 Davidia involucrata HOM05D003435 ORTHO05D004032 2.4e-305 1052.4 601 87.0
QL06p042284 Quercus lobata HOM05D003435 ORTHO05D004032 5.6e-302 1041.2 709 79.1
CDE05G0324 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 7.8e-296 1020.8 752 69.0
TPR.G19005 Trifolium pratense HOM05D003435 ORTHO05D004032 2.7e-288 995.7 736 72.7
MELO3C020891.2 Cucumis melo HOM05D003435 ORTHO05D004032 2.1e-277 959.5 713 75.5
VMungo0251G2411 Vigna mungo HOM05D003435 ORTHO05D004032 1.8e-271 939.9 707 73.1
VMungo1215G2578 Vigna mungo HOM05D003435 ORTHO05D004032 1.4e-268 930.2 736 69.4
CDE05G0341 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 1.6e-264 916.8 757 67.5
Medtr5g017800 Medicago truncatula HOM05D003435 ORTHO05D004032 9.6e-262 907.5 756 66.5
Lalb_Chr16g0388361 Lupinus albus HOM05D003435 ORTHO05D004032 2.0e-259 899.8 715 68.4
Lalb_Chr09g0323051 Lupinus albus HOM05D003435 ORTHO05D004032 1.0e-258 897.5 707 69.7
Mapoly0038s0024 Marchantia polymorpha HOM05D003435 ORTHO05D004032 7.4e-254 881.3 1126 47.9
AagrBONN_evm.TU.Sc2ySwM_117.2914 Anthoceros agrestis HOM05D003435 ORTHO05D004032 1.8e-252 876.7 1143 46.5
HPP92_006173 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.1e-246 857.4 842 58.4
SMO304G0064 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 1.8e-244 850.1 1074 48.1
Pp3c3_22080 Physcomitrium patens HOM05D003435 ORTHO05D004032 1.4e-241 840.5 1082 47.0
unitig_27.g25322 Utricularia gibba HOM05D003435 ORTHO05D004032 5.3e-236 822.0 585 71.5
Os09g0407950 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 4.1e-204 716.1 511 70.8
Actinidia02768 Actinidia chinensis HOM05D003435 ORTHO05D004032 1.4e-191 674.5 469 79.3
Potri.005G136300 Populus trichocarpa HOM05D003435 ORTHO05D004032 2.3e-186 657.1 529 71.5
CBR_g239 Chara braunii HOM05D003435 ORTHO05D004032 3.8e-181 639.8 1224 37.3
CBR_g11121 Chara braunii HOM05D003435 ORTHO05D004032 3.5e-179 633.3 1242 36.8
Hund13566 Selenicereus undatus HOM05D003435 ORTHO05D004032 1.5e-169 601.3 530 66.6
Psat0ss9382g0080 Pisum sativum HOM05D003435 ORTHO05D004032 4.8e-160 569.7 433 69.5
Hund13496 Selenicereus undatus HOM05D003435 ORTHO05D004032 4.8e-160 569.7 416 70.9
SHI23026 Sapria himalayana HOM05D003435 ORTHO05D004032 2.3e-130 471.1 571 52.0
TPR.G19029 Trifolium pratense HOM05D003435 ORTHO05D004032 9.7e-121 439.1 309 69.3
GSVIVG01006575001 Vitis vinifera HOM05D003435 ORTHO05D004032 2.2e-120 438.0 294 73.5
VMungo0251G1968 Vigna mungo HOM05D003435 ORTHO05D004032 6.3e-120 436.4 318 67.9
Medtr5g017810 Medicago truncatula HOM05D003435 ORTHO05D004032 1.1e-119 435.6 312 68.3
Lalb_Chr16g0388371 Lupinus albus HOM05D003435 ORTHO05D004032 1.3e-117 428.7 309 68.6
QL06p042301 Quercus lobata HOM05D003435 ORTHO05D004032 1.5e-113 415.2 274 72.3
RhsimUnG0101300 Rhododendron simsii HOM05D003435 ORTHO05D004032 7.7e-102 376.3 297 67.7
unitig_27.g25323 Utricularia gibba HOM05D003435 ORTHO05D004032 2.9e-101 374.4 440 57.0
CDE05G0727 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 7.8e-94 349.7 264 63.6
VMungo1215G2721 Vigna mungo HOM05D003435 ORTHO05D004032 1.2e-89 335.9 235 68.1
Lalb_Chr09g0323031 Lupinus albus HOM05D003435 ORTHO05D004032 1.4e-82 312.4 213 70.4
GSVIVG01004639001 Vitis vinifera HOM05D003435 ORTHO05D004032 2.9e-80 304.7 194 82.0
SHI23020 Sapria himalayana HOM05D003435 ORTHO05D004032 1.4e-79 302.4 306 52.3
arahy.Tifrunner.gnm1.ann1.B7G4FR Arachis hypogaea HOM05D003435 ORTHO05D004032 2.3e-77 295.0 158 91.8
GSVIVG01002593001 Vitis vinifera HOM05D003435 ORTHO05D004032 1.8e-74 285.4 159 84.9
Hma1.2p1_0767F.1_g215490 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 9.9e-73 279.6 191 69.6
Os09g0408000 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 1.9e-68 265.4 343 55.1
HPP92_006174 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.7e-61 242.3 194 59.3
Psat4g190960 Pisum sativum HOM05D005005 ORTHO05D006178 2.1e-54 218.8 154 74.0
CDE05G1509 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 1.3e-53 216.1 280 50.4
Rhsim03G0142800 Rhododendron simsii HOM05D003435 ORTHO05D004032 7.9e-46 190.3 156 66.0
Rhsim06G0113700 Rhododendron simsii HOM05D003435 ORTHO05D004032 8.7e-45 186.8 98 89.8
GSVIVG01002902001 Vitis vinifera HOM05D003435 ORTHO05D004032 7.9e-38 163.7 115 75.7
Hma1.2p1_0979F.1_g243630 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 1.1e-31 143.3 84 73.8
Hma1.2p1_1179F.1_g264490 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 1.1e-31 143.3 84 73.8
Psat7g159960 Pisum sativum HOM05D003635 ORTHO05D004283 1.6e-30 139.4 167 52.1
Actinidia02767 Actinidia chinensis HOM05D003435 ORTHO05D004032 1.0e-29 136.7 75 93.3
Psat4g095840 Pisum sativum HOM05D003435 ORTHO05D020975 1.1e-28 133.3 139 56.8
Psat5g173160 Pisum sativum HOM05D003435 ORTHO05D020975 4.3e-28 131.3 101 64.4
Psat6g176120 Pisum sativum HOM05D003435 ORTHO05D004032 4.3e-28 131.3 150 53.3
Psat7g159840 Pisum sativum HOM05D003435 ORTHO05D005869 8.2e-27 127.1 160 48.1
Psat5g173200 Pisum sativum HOM05D000518 ORTHO05D000737 1.1e-26 126.7 101 62.4
Ah.10g029830 Amaranthus hybridus HOM05D003435 ORTHO05D004032 2.9e-24 118.6 65 89.2
COL.COLO4_18252 Corchorus olitorius HOM05D003435 ORTHO05D004032 1.2e-22 113.2 107 56.1
Psat5g056680 Pisum sativum HOM05D003435 ORTHO05D023081 1.2e-22 113.2 119 52.9
BcaB02g09979 Brassica carinata HOM05D003435 ORTHO05D004032 6.1e-22 110.9 76 72.4
Gohir.A11G190351 Gossypium hirsutum HOM05D003435 ORTHO05D004032 5.3e-18 97.8 67 70.1
HPP92_006267 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.2e-14 86.7 200 34.0
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 6.1e-14 84.3 53 81.1
COL.COLO4_11232 Corchorus olitorius HOM05D001978 ORTHO05D018189 1.4e-13 83.2 57 77.2
Glyma.11G057700 Glycine max HOM05D003435 ORTHO05D004032 3.1e-10 72.0 41 82.9
Cre08.g366150 Chlamydomonas reinhardtii HOM05D003435 ORTHO05D004032 3.5e-09 68.6 305 25.6
EL10Ac2g02709 Beta vulgaris HOM05D003435 ORTHO05D004032 4.5e-09 68.2 151 40.4
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 2.1e-06 59.3 89 46.1


User provided reference genes

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