Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 2.9e-47 191.4 88 100.0
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 2.9e-23 111.7 55 90.9
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 5.1e-20 100.9 60 71.7
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 6.7e-20 100.5 55 78.2
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.9e-19 99.0 53 83.0
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 2.5e-19 98.6 53 83.0
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 5.7e-19 97.4 55 81.8
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 5.7e-19 97.4 53 83.0
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 9.7e-19 96.7 56 80.4
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.3e-18 96.3 53 81.1
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.3e-18 96.3 53 81.1
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 2.2e-18 95.5 65 69.2
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 2.2e-18 95.5 53 75.5
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 2.8e-18 95.1 57 75.4
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 2.8e-18 95.1 53 83.0
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 2.8e-18 95.1 51 78.4
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 2.8e-18 95.1 54 79.6
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 3.7e-18 94.7 51 78.4
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 3.7e-18 94.7 63 71.4
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 4.8e-18 94.4 55 76.4
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 4.8e-18 94.4 56 75.0
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 6.3e-18 94.0 53 81.1
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 6.3e-18 94.0 53 81.1
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 8.2e-18 93.6 51 78.4
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 8.2e-18 93.6 66 68.2
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 8.2e-18 93.6 66 68.2
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 8.2e-18 93.6 53 77.4
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 1.1e-17 93.2 45 86.7
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 1.1e-17 93.2 53 81.1
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 1.1e-17 93.2 53 79.2
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 1.1e-17 93.2 53 81.1
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 1.4e-17 92.8 53 77.4
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.4e-17 92.8 54 77.8
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 1.4e-17 92.8 52 78.8
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 1.8e-17 92.4 53 77.4
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 1.8e-17 92.4 53 77.4
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 1.8e-17 92.4 53 77.4
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 1.8e-17 92.4 53 77.4
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 1.8e-17 92.4 53 77.4
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 1.8e-17 92.4 53 77.4
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 1.8e-17 92.4 53 77.4
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 1.8e-17 92.4 53 77.4
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 1.8e-17 92.4 53 77.4
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 1.8e-17 92.4 53 77.4
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 1.8e-17 92.4 53 77.4
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 1.8e-17 92.4 53 81.1
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 2.4e-17 92.0 53 77.4
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 2.4e-17 92.0 53 75.5
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 2.4e-17 92.0 53 77.4
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 2.4e-17 92.0 53 77.4
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.4e-17 92.0 53 77.4
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 2.4e-17 92.0 53 77.4
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 3.1e-17 91.7 52 78.8
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 4.1e-17 91.3 53 75.5
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 4.1e-17 91.3 53 75.5
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 4.1e-17 91.3 53 75.5
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.3e-17 90.9 54 77.8
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 5.3e-17 90.9 53 77.4
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 6.9e-17 90.5 55 74.5
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 6.9e-17 90.5 53 75.5
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 9.0e-17 90.1 53 77.4
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 9.0e-17 90.1 53 77.4
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 9.0e-17 90.1 53 77.4
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 9.0e-17 90.1 53 77.4
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 9.0e-17 90.1 53 73.6
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 9.0e-17 90.1 53 79.2
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 9.0e-17 90.1 53 79.2
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 1.2e-16 89.7 53 77.4
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 1.2e-16 89.7 53 77.4
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 1.2e-16 89.7 53 77.4
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.2e-16 89.7 63 68.3
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.2e-16 89.7 53 73.6
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 2.0e-16 89.0 48 79.2
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 2.0e-16 89.0 53 75.5
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 2.6e-16 88.6 53 77.4
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 2.6e-16 88.6 53 77.4
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 2.6e-16 88.6 54 72.2
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 2.6e-16 88.6 53 77.4
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 3.4e-16 88.2 54 72.2
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 3.4e-16 88.2 53 73.6
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 5.9e-16 87.4 53 73.6
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 5.9e-16 87.4 68 61.8
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 5.9e-16 87.4 52 69.2
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 7.7e-16 87.0 53 77.4
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 1.3e-15 86.3 88 51.1
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 3.8e-15 84.7 54 70.4
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 8.5e-15 83.6 55 65.5
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 8.5e-15 83.6 55 65.5
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 1.1e-14 83.2 55 65.5
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 1.1e-14 83.2 53 67.9
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 1.9e-14 82.4 52 71.2
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 2.5e-14 82.0 55 65.5
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 2.5e-14 82.0 55 67.3
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 3.2e-14 81.6 55 69.1
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 4.2e-14 81.3 55 69.1
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 7.2e-14 80.5 52 63.5
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 1.6e-13 79.3 55 65.5
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 2.1e-13 79.0 55 63.6
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 2.7e-13 78.6 54 68.5
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.7e-13 78.6 54 70.4
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.4e-12 76.3 35 91.4
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 3.0e-12 75.1 43 76.7
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 1.5e-11 72.8 52 65.4
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 2.0e-11 72.4 58 60.3
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 2.5e-11 72.0 55 65.5
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 1.7e-10 69.3 33 84.8
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 1.7e-10 69.3 41 78.0
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 2.8e-10 68.6 87 44.8
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.8e-10 67.8 96 42.7
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.4e-09 66.2 40 75.0
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.4e-09 66.2 39 71.8
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 5.3e-09 64.3 79 45.6
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 5.3e-09 64.3 79 45.6
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.3e-09 64.3 32 87.5
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 6.9e-09 63.9 31 83.9
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 6.9e-09 63.9 31 87.1
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 5.9e-08 60.8 40 65.0
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 1.3e-07 59.7 31 80.6
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 2.2e-07 58.9 32 84.4
Pp3c4_25750 Physcomitrium patens HOM05D006514 ORTHO05D008138 2.2e-07 58.9 59 49.2
Peaxi162Scf00515g00224 Petunia axillaris HOM05D001563 ORTHO05D001956 9.4e-06 53.5 55 50.9


User provided reference genes

Program Settings