Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.6e-255 884.0 438 100.0
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.1e-195 686.8 428 82.7
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 2.3e-177 625.9 411 78.3
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 5.1e-177 624.8 427 74.9
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 5.4e-171 604.7 424 73.6
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 2.3e-169 599.4 424 73.6
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 2.1e-167 592.8 424 71.0
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 8.1e-167 590.9 430 72.8
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 3.1e-166 589.0 411 72.5
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.5e-165 585.1 414 71.7
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 4.5e-165 585.1 414 71.7
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 8.4e-164 580.9 426 70.2
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 2.4e-163 579.3 427 70.7
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.2e-163 578.6 414 71.3
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 4.2e-163 578.6 421 70.3
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 7.1e-163 577.8 413 71.9
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 1.6e-162 576.6 410 72.2
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 1.6e-162 576.6 407 72.5
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 2.1e-162 576.2 409 72.4
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 2.7e-162 575.9 428 70.8
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 4.6e-162 575.1 400 73.0
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 7.9e-162 574.3 431 68.9
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 3.0e-161 572.4 407 72.2
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 3.0e-161 572.4 429 69.0
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 3.0e-161 572.4 427 69.1
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 6.7e-161 571.2 409 70.9
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 8.7e-161 570.9 411 72.3
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 1.9e-160 569.7 427 68.9
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.9e-160 569.7 424 70.0
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 3.3e-160 568.9 427 70.5
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 5.6e-160 568.2 409 70.7
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 7.4e-160 567.8 411 71.8
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.6e-159 566.6 405 71.9
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 3.7e-159 565.5 402 72.9
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 4.8e-159 565.1 411 71.8
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 4.8e-159 565.1 414 70.0
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 8.1e-159 564.3 400 72.5
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 8.1e-159 564.3 422 68.5
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.1e-158 563.9 405 70.1
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 1.4e-158 563.5 411 69.6
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 4.0e-158 562.0 399 71.4
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 4.0e-158 562.0 402 70.6
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 4.0e-158 562.0 402 72.9
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 5.3e-158 561.6 402 72.4
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 6.9e-158 561.2 432 67.6
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 6.9e-158 561.2 405 71.6
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 1.2e-157 560.5 400 71.5
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 1.5e-157 560.1 403 71.5
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 3.4e-157 558.9 415 70.6
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 4.5e-157 558.5 410 70.0
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 5.8e-157 558.1 400 72.2
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 5.8e-157 558.1 446 66.4
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 7.6e-157 557.8 400 71.5
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 7.6e-157 557.8 402 71.6
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.7e-156 556.6 413 70.0
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 1.7e-156 556.6 402 71.4
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.2e-156 556.2 413 70.0
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 2.2e-156 556.2 402 70.4
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.8e-156 555.4 413 69.7
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 3.8e-156 555.4 422 69.0
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 4.9e-156 555.1 411 68.9
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 1.1e-155 553.9 405 69.9
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 1.1e-155 553.9 427 67.0
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 1.1e-155 553.9 428 67.5
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 1.1e-155 553.9 403 68.7
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 1.9e-155 553.1 400 69.8
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 9.3e-155 550.8 416 69.2
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 1.2e-154 550.4 411 68.9
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 1.2e-154 550.4 413 68.5
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 1.6e-154 550.1 410 68.5
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 2.1e-154 549.7 398 71.1
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 7.9e-154 547.7 435 67.6
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 1.0e-153 547.4 413 69.0
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 1.3e-153 547.0 401 70.3
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 2.3e-153 546.2 409 68.7
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 3.9e-153 545.4 403 70.0
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 5.1e-153 545.0 403 68.5
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 8.7e-153 544.3 403 68.5
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 1.1e-152 543.9 424 67.2
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 1.5e-152 543.5 403 68.2
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 1.5e-152 543.5 411 67.9
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 1.9e-152 543.1 415 68.4
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 1.9e-152 543.1 409 67.5
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 4.3e-152 542.0 400 69.5
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 4.3e-152 542.0 396 69.7
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 2.1e-151 539.7 403 67.5
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 2.8e-151 539.3 403 68.0
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 2.8e-151 539.3 403 68.0
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 6.2e-151 538.1 404 67.6
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 1.1e-150 537.3 401 68.1
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 9.0e-150 534.3 407 67.1
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 2.0e-149 533.1 404 67.8
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 2.0e-149 533.1 404 67.8
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 4.5e-149 531.9 426 66.9
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 5.8e-149 531.6 408 68.6
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.7e-148 530.0 394 69.5
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 3.2e-147 525.8 412 65.5
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 7.1e-147 524.6 389 68.4
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 1.2e-146 523.9 503 56.9
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 2.3e-145 519.6 477 59.7
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 3.0e-145 519.2 411 64.7
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 3.0e-145 519.2 399 66.4
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 1.5e-144 516.9 427 64.2
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 1.3e-143 513.8 419 64.4
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 6.9e-142 508.1 428 61.9
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.6e-141 506.1 397 66.5
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.7e-140 503.4 470 58.1
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 5.0e-140 501.9 404 64.9
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 3.3e-136 489.2 412 63.6
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 7.4e-136 488.0 401 64.8
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.7e-135 486.9 412 63.3
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 8.5e-132 474.6 409 62.6
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 5.5e-131 471.9 329 71.7
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 7.2e-131 471.5 345 70.1
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.7e-130 469.5 316 75.0
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.0e-129 467.6 331 71.3
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 3.8e-124 449.1 307 73.6
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.7e-122 443.0 325 70.8
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 3.0e-121 439.5 345 65.8
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 4.1e-118 429.1 304 69.4
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 5.3e-118 428.7 325 68.3
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 7.0e-118 428.3 377 59.4
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 7.7e-117 424.9 360 62.5
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 7.5e-112 408.3 388 54.6
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.3e-111 407.5 398 54.3
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 6.5e-108 395.2 388 54.1
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 2.8e-103 379.8 293 68.3
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 2.2e-95 353.6 266 67.7
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 5.6e-91 339.0 211 77.7
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 1.6e-90 337.4 356 51.1
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.4e-73 281.2 278 55.8
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.4e-70 271.2 229 62.4
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 9.6e-59 231.9 155 72.9
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 1.5e-48 198.0 132 72.0
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.1e-33 148.7 127 59.8
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 5.9e-24 116.3 104 60.6
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 3.8e-23 113.6 57 96.5
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.7e-21 107.5 91 58.2
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 2.5e-19 100.9 93 59.1
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.1e-14 85.5 56 71.4
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 4.2e-14 83.6 52 71.2
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.6e-13 81.6 90 50.0
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 3.0e-12 77.4 178 32.0
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.3e-10 72.0 45 77.8
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.3e-10 72.0 137 31.4
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.1e-09 67.4 69 53.6
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.6e-08 65.1 69 52.2
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 3.5e-08 63.9 73 49.3
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 5.0e-07 60.1 52 59.6


User provided reference genes

Program Settings