Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 1.3e-108 396.4 194 100.0
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 5.8e-101 370.9 194 92.8
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 7.6e-101 370.5 191 94.8
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 3.8e-100 368.2 194 92.3
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 1.1e-99 366.7 194 91.2
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 1.9e-99 365.9 194 91.8
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 9.3e-99 363.6 191 92.7
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 9.3e-99 363.6 191 92.7
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 1.6e-98 362.8 194 90.7
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 2.1e-98 362.5 194 90.7
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 2.1e-98 362.5 194 90.7
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 3.5e-98 361.7 194 89.2
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 3.5e-98 361.7 194 90.7
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 3.5e-98 361.7 194 90.7
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 4.6e-98 361.3 194 91.8
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 7.9e-98 360.5 191 92.1
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 7.9e-98 360.5 193 89.6
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 1.0e-97 360.1 194 90.2
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 1.0e-97 360.1 194 90.7
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 1.0e-97 360.1 194 90.7
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 1.0e-97 360.1 194 91.2
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 1.0e-97 360.1 194 90.2
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 1.3e-97 359.8 247 76.1
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 1.3e-97 359.8 194 90.7
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 1.8e-97 359.4 194 88.7
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 3.0e-97 358.6 194 89.2
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 6.7e-97 357.5 194 90.2
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 8.7e-97 357.1 191 90.6
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 8.7e-97 357.1 191 90.6
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 1.5e-96 356.3 194 88.7
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 1.5e-96 356.3 191 90.6
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 1.9e-96 355.9 194 88.7
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 1.9e-96 355.9 194 88.7
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 1.9e-96 355.9 194 88.1
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 1.9e-96 355.9 194 89.2
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 2.5e-96 355.5 194 89.2
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 4.3e-96 354.8 194 87.6
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 4.3e-96 354.8 194 88.7
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 4.3e-96 354.8 194 88.1
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 1.6e-95 352.8 191 90.1
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 1.6e-95 352.8 194 87.1
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 2.2e-95 352.4 192 88.0
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 2.2e-95 352.4 194 87.6
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 2.2e-95 352.4 194 88.7
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 8.2e-95 350.5 191 89.0
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.8e-94 349.4 194 86.6
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 2.4e-94 349.0 191 87.4
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 2.4e-94 349.0 194 86.1
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 5.3e-94 347.8 194 86.1
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 5.3e-94 347.8 194 85.6
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 5.3e-94 347.8 191 88.5
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 5.3e-94 347.8 191 88.5
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 6.9e-94 347.4 194 86.6
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 6.9e-94 347.4 194 86.1
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 6.9e-94 347.4 195 87.2
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 6.9e-94 347.4 194 86.6
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 9.0e-94 347.1 194 86.6
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 9.0e-94 347.1 191 88.5
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 2.0e-93 345.9 194 85.6
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 2.0e-93 345.9 194 85.6
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 2.0e-93 345.9 194 85.6
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 2.0e-93 345.9 194 85.6
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 2.6e-93 345.5 220 77.7
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 3.4e-93 345.1 194 85.6
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 3.4e-93 345.1 191 88.0
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 5.9e-93 344.4 194 85.1
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 5.9e-93 344.4 191 87.4
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 7.7e-93 344.0 194 86.1
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 1.0e-92 343.6 198 86.4
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 1.0e-92 343.6 194 86.1
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 1.3e-92 343.2 194 85.6
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 8.5e-92 340.5 194 86.1
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 1.1e-91 340.1 194 85.6
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 1.4e-91 339.7 194 86.1
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 4.2e-91 338.2 183 89.6
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 2.7e-90 335.5 194 84.5
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 2.7e-90 335.5 194 84.5
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 1.0e-89 333.6 233 73.8
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.4e-89 333.2 211 79.1
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 1.8e-89 332.8 191 85.3
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 1.1e-88 330.1 191 84.3
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 2.0e-88 329.3 194 82.5
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 7.4e-88 327.4 194 83.0
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 7.4e-88 327.4 164 95.7
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 8.2e-87 323.9 194 81.4
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 2.4e-86 322.4 200 80.0
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 6.9e-86 320.9 178 85.4
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 1.5e-85 319.7 193 79.3
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 3.8e-84 315.1 164 89.0
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 1.4e-83 313.2 188 81.4
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 2.5e-83 312.4 170 89.4
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 7.2e-83 310.8 190 81.6
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 3.0e-81 305.4 183 79.2
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 8.8e-81 303.9 191 81.2
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 2.2e-79 299.3 160 90.6
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 2.4e-78 295.8 194 73.7
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 4.5e-77 291.6 176 83.0
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 3.0e-73 278.9 190 72.6
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 2.0e-69 266.2 158 84.8
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.7e-69 265.8 159 84.3
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 5.9e-69 264.6 134 95.5
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 1.7e-68 263.1 140 91.4
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 5.0e-68 261.5 157 82.8
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 6.1e-66 254.6 228 62.7
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 1.8e-65 253.1 195 67.2
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 3.7e-63 245.4 171 67.8
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 1.1e-62 243.8 164 72.0
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 2.5e-59 232.6 171 64.3
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 2.7e-58 229.2 171 63.2
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 3.6e-58 228.8 191 65.4
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 8.0e-58 227.6 174 62.1
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 2.6e-56 222.6 134 82.8
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 3.5e-53 212.2 178 56.7
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 1.0e-52 210.7 112 88.4
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 3.8e-52 208.8 168 65.5
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 2.0e-48 196.4 142 63.4
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 1.6e-45 186.8 113 77.9
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 4.3e-43 178.7 142 57.0
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 1.7e-39 166.8 113 66.4
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 4.1e-38 162.2 144 50.7
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 1.5e-32 143.7 136 58.8
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 4.6e-29 132.1 136 55.1
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.9e-28 129.0 136 56.6
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 5.1e-28 128.6 167 47.3
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 2.3e-25 119.8 126 50.8
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 8.4e-23 111.3 221 38.5
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.4e-22 110.5 68 76.5
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.8e-21 104.8 136 46.3
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 5.1e-20 102.1 124 49.2
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.4e-17 94.0 53 86.8
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 8.9e-17 91.3 58 75.9
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 1.1e-14 84.3 58 67.2
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 2.1e-13 80.1 51 78.4
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 4.0e-09 65.9 33 81.8
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 6.4e-07 58.5 103 37.9
Dinv38404 Davidia involucrata HOM05D005644 ORTHO05D007092 1.1e-06 57.8 60 53.3


User provided reference genes

Program Settings