Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 1.1e-90 336.7 175 100.0
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 5.9e-84 314.3 175 92.0
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 7.9e-81 303.9 175 89.1
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.1e-77 293.5 175 86.9
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 1.0e-75 287.0 175 86.3
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 2.6e-71 272.3 175 78.9
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 1.3e-70 270.0 172 79.1
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 1.7e-70 269.6 171 78.4
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.7e-70 269.6 173 78.6
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 4.8e-70 268.1 170 79.4
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 1.4e-69 266.5 174 77.0
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 2.4e-69 265.8 172 77.3
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.4e-69 265.8 167 79.6
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 2.4e-69 265.8 168 79.8
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 2.4e-69 265.8 162 83.3
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 3.1e-69 265.4 175 76.0
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 5.3e-69 264.6 170 77.6
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 7.0e-69 264.2 167 80.2
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 1.2e-68 263.5 161 80.1
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 1.2e-68 263.5 167 78.4
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 1.2e-68 263.5 169 79.9
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 2.6e-68 262.3 170 78.8
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 2.6e-68 262.3 160 78.1
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 2.6e-68 262.3 168 78.0
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 2.6e-68 262.3 168 78.0
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 5.9e-68 261.2 160 82.5
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 1.0e-67 260.4 160 80.0
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.0e-67 260.4 168 76.8
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 1.3e-67 260.0 172 76.2
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.7e-67 259.6 171 76.6
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 2.2e-67 259.2 163 77.9
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 2.2e-67 259.2 156 84.0
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 2.2e-67 259.2 166 77.7
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 2.9e-67 258.8 172 76.2
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 2.9e-67 258.8 172 76.7
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 3.8e-67 258.5 165 78.8
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 3.8e-67 258.5 178 75.3
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 8.5e-67 257.3 161 80.1
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 1.5e-66 256.5 161 78.3
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 1.5e-66 256.5 164 77.4
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 1.9e-66 256.1 163 77.3
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 2.5e-66 255.8 176 72.7
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 3.2e-66 255.4 170 74.7
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 4.2e-66 255.0 168 80.4
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 5.5e-66 254.6 173 74.6
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 5.5e-66 254.6 163 76.7
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 7.2e-66 254.2 167 76.0
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 7.2e-66 254.2 167 76.0
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 1.2e-65 253.4 170 73.5
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 1.6e-65 253.1 173 74.0
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 2.1e-65 252.7 164 77.4
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 2.1e-65 252.7 158 79.1
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 3.6e-65 251.9 164 75.0
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 3.6e-65 251.9 167 77.8
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 4.7e-65 251.5 159 76.7
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 4.7e-65 251.5 159 78.0
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 6.1e-65 251.1 167 76.0
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 8.0e-65 250.8 159 76.7
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 8.0e-65 250.8 161 75.8
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 1.0e-64 250.4 159 76.7
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 1.0e-64 250.4 167 73.7
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 1.0e-64 250.4 159 77.4
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 1.4e-64 250.0 164 78.0
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 2.3e-64 249.2 167 77.2
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 3.9e-64 248.4 172 72.1
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 2.0e-63 246.1 160 74.4
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 2.0e-63 246.1 160 74.4
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 2.0e-63 246.1 167 72.5
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 2.0e-63 246.1 168 73.2
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 4.4e-63 245.0 159 76.1
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 4.4e-63 245.0 170 72.4
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 5.7e-63 244.6 160 74.4
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 9.7e-63 243.8 160 75.0
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 1.3e-62 243.4 166 74.7
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 4.8e-62 241.5 174 72.4
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 6.3e-62 241.1 160 73.8
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 8.2e-62 240.7 153 76.5
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 8.2e-62 240.7 168 72.6
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 1.1e-61 240.4 155 77.4
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 1.4e-61 240.0 160 73.1
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 1.4e-61 240.0 171 69.6
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 2.4e-61 239.2 164 70.7
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 3.1e-61 238.8 193 64.2
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 4.1e-61 238.4 166 72.3
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 7.0e-61 237.7 170 68.2
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 7.0e-61 237.7 170 69.4
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 9.1e-61 237.3 167 71.3
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 9.1e-61 237.3 159 74.8
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 1.2e-60 236.9 162 71.6
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 2.6e-60 235.7 167 70.7
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 3.5e-60 235.3 167 71.3
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 5.9e-60 234.6 168 70.2
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 7.7e-60 234.2 155 76.1
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 1.7e-59 233.0 156 73.1
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 1.7e-59 233.0 171 67.3
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 6.5e-59 231.1 151 76.8
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 6.5e-59 231.1 171 66.7
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 3.2e-58 228.8 170 73.5
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 4.2e-58 228.4 150 76.0
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 5.5e-58 228.0 167 68.9
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 9.4e-58 227.3 158 69.0
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 2.7e-57 225.7 156 71.8
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 4.7e-57 224.9 205 59.5
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 8.0e-57 224.2 218 58.3
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 3.0e-56 222.2 168 68.5
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 3.0e-56 222.2 155 71.0
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 1.2e-55 220.3 149 71.8
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 1.5e-55 219.9 169 65.7
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.6e-55 219.2 167 65.3
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 3.4e-55 218.8 138 81.9
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 5.7e-55 218.0 161 72.0
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.8e-54 215.7 172 66.9
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 3.7e-54 215.3 168 64.3
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.4e-53 213.4 170 61.8
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 7.0e-53 211.1 154 68.2
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 7.7e-52 207.6 167 64.1
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 4.2e-50 201.8 130 72.3
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 6.1e-49 198.0 187 57.8
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 1.0e-48 197.2 154 65.6
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.8e-48 196.4 159 62.3
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 5.2e-48 194.9 132 72.7
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 5.2e-48 194.9 117 88.9
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 5.2e-48 194.9 170 60.6
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 7.5e-47 191.0 159 62.9
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 8.3e-46 187.6 119 75.6
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 1.6e-44 183.3 163 60.1
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 3.5e-44 182.2 138 62.3
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 1.7e-43 179.9 143 69.2
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 5.0e-43 178.3 109 77.1
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 4.2e-42 175.3 104 87.5
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 4.7e-41 171.8 169 56.2
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 1.7e-38 163.3 149 57.7
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 2.9e-38 162.5 109 76.1
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 7.0e-37 157.9 151 59.6
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 5.9e-36 154.8 107 67.3
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 6.6e-35 151.4 168 49.4
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 8.6e-35 151.0 94 87.2
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 1.9e-34 149.8 151 49.7
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 6.2e-33 144.8 110 64.5
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 1.2e-31 140.6 99 73.7
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 2.4e-29 132.9 90 77.8
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 7.0e-29 131.3 110 62.7
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 4.6e-28 128.6 84 69.0
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 3.6e-25 119.0 159 45.3
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 3.7e-22 109.0 86 67.4
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 2.4e-21 106.3 152 38.2
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 1.6e-20 103.6 71 73.2
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 2.3e-19 99.8 59 78.0
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 1.9e-18 96.7 60 76.7
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 5.6e-18 95.1 59 79.7
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 5.6e-18 95.1 59 79.7
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 1.6e-17 93.6 111 55.9
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 3.7e-14 82.4 152 34.2
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 1.9e-13 80.1 53 83.0
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 1.6e-12 77.0 52 75.0
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 3.5e-12 75.9 45 80.0
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 1.0e-11 74.3 204 27.0
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 3.9e-11 72.4 151 34.4
Actinidia12710 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.5e-10 70.5 48 70.8
arahy.Tifrunner.gnm1.ann1.7621NS Arachis hypogaea HOM05D054750 ORTHO05D005573 2.9e-06 56.2 57 52.6


User provided reference genes

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