Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 8.4e-41 169.9 82 100.0
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 7.1e-32 140.2 78 87.2
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 5.1e-22 107.5 76 75.0
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 8.1e-20 100.1 74 73.0
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 1.8e-19 99.0 76 65.8
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 9.3e-16 86.7 81 59.3
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 5.1e-14 80.9 82 58.5
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 2.4e-11 72.0 48 77.1
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 2.4e-11 72.0 64 59.4
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 3.1e-11 71.6 48 79.2
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 3.1e-11 71.6 48 79.2
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 4.0e-11 71.2 47 78.7
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 4.0e-11 71.2 42 85.7
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 5.3e-11 70.9 48 77.1
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 5.3e-11 70.9 48 77.1
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 5.3e-11 70.9 46 80.4
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 5.3e-11 70.9 46 80.4
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 5.3e-11 70.9 65 58.5
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 5.3e-11 70.9 47 80.9
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 6.9e-11 70.5 46 80.4
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 6.9e-11 70.5 48 77.1
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 6.9e-11 70.5 49 77.6
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 9.0e-11 70.1 45 82.2
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 9.0e-11 70.1 45 82.2
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 9.0e-11 70.1 45 82.2
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 9.0e-11 70.1 45 82.2
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 9.0e-11 70.1 45 82.2
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 9.0e-11 70.1 45 82.2
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 9.0e-11 70.1 45 82.2
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 9.0e-11 70.1 45 82.2
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 9.0e-11 70.1 45 82.2
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 9.0e-11 70.1 45 82.2
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 9.0e-11 70.1 45 82.2
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 1.2e-10 69.7 47 78.7
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 1.2e-10 69.7 47 76.6
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 1.2e-10 69.7 48 77.1
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 1.5e-10 69.3 47 76.6
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 2.0e-10 68.9 45 80.0
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 2.0e-10 68.9 45 80.0
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 2.0e-10 68.9 45 80.0
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.0e-10 68.9 47 78.7
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 3.4e-10 68.2 45 80.0
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 3.4e-10 68.2 47 78.7
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 3.4e-10 68.2 47 78.7
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 3.4e-10 68.2 38 89.5
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 3.4e-10 68.2 45 80.0
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 1.0e-09 66.6 45 77.8
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 1.3e-09 66.2 35 94.3
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 2.2e-09 65.5 45 77.8
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 2.9e-09 65.1 44 79.5
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 2.9e-09 65.1 61 57.4
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 5.0e-09 64.3 42 81.0
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 6.5e-09 63.9 44 77.3
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 8.4e-09 63.5 42 78.6
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 8.4e-09 63.5 42 78.6
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 1.1e-08 63.2 42 78.6
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.1e-08 63.2 42 78.6
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 1.9e-08 62.4 42 78.6
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 1.9e-08 62.4 42 78.6
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 2.5e-08 62.0 42 78.6
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 2.5e-08 62.0 42 78.6
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 2.5e-08 62.0 42 78.6
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 2.5e-08 62.0 42 78.6
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 3.2e-08 61.6 42 78.6
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 7.1e-08 60.5 42 76.2
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 1.6e-07 59.3 40 77.5
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 3.5e-07 58.2 36 80.6


User provided reference genes

Program Settings