Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17766 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 2.4e-226 788.5 402 100.0
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 2.7e-169 599.0 389 83.0
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 5.2e-152 541.6 319 86.2
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 1.7e-147 526.6 319 85.0
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 5.6e-146 521.5 323 81.1
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 2.8e-145 519.2 323 80.8
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 1.0e-144 517.3 322 82.0
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.3e-142 510.4 323 79.3
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 4.9e-142 508.4 319 80.9
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 8.3e-142 507.7 319 80.6
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 1.4e-141 506.9 317 82.0
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 1.4e-141 506.9 319 80.9
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 7.0e-141 504.6 319 79.9
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 7.0e-141 504.6 317 79.2
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 7.0e-141 504.6 319 80.3
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 7.0e-141 504.6 319 80.9
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 7.0e-141 504.6 320 79.7
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 7.0e-141 504.6 320 79.7
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 1.2e-140 503.8 320 79.7
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 1.2e-140 503.8 320 79.1
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 1.6e-140 503.4 319 79.9
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 3.5e-140 502.3 319 80.9
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 1.3e-139 500.4 321 78.8
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 1.7e-139 500.0 344 75.0
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 3.0e-139 499.2 317 81.4
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 3.9e-139 498.8 317 79.2
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 5.0e-139 498.4 319 79.6
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 1.5e-138 496.9 317 78.5
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 2.5e-138 496.1 316 79.7
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 4.3e-138 495.4 317 79.5
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.8e-137 492.7 340 76.2
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 3.1e-136 489.2 319 78.1
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 3.1e-136 489.2 317 79.2
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 1.2e-135 487.3 319 78.1
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 1.2e-135 487.3 346 73.4
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.5e-135 486.9 325 78.2
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 3.4e-135 485.7 325 77.5
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 4.4e-135 485.3 325 77.8
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 4.4e-135 485.3 316 79.1
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 5.8e-135 485.0 323 77.4
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 7.5e-135 484.6 319 77.7
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 9.8e-135 484.2 346 72.8
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 9.8e-135 484.2 319 78.4
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 1.3e-134 483.8 319 77.1
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 2.2e-134 483.0 336 74.4
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 2.9e-134 482.6 318 77.7
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 2.9e-134 482.6 317 81.4
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 4.9e-134 481.9 321 77.9
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 4.9e-134 481.9 319 78.1
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 8.3e-134 481.1 317 77.0
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 1.1e-133 480.7 327 76.1
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 7.0e-133 478.0 319 76.2
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 1.2e-132 477.2 306 79.4
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 1.6e-132 476.9 321 76.3
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 2.0e-132 476.5 317 76.7
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 6.0e-132 474.9 316 76.9
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 1.3e-131 473.8 316 75.6
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 1.3e-131 473.8 316 76.9
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 1.7e-131 473.4 319 77.1
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 1.7e-131 473.4 317 75.7
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 2.3e-131 473.0 317 75.7
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 5.0e-131 471.9 321 74.8
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 1.5e-130 470.3 320 77.5
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 5.6e-130 468.4 316 75.0
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 7.3e-130 468.0 319 72.7
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 2.1e-129 466.5 321 76.0
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 3.6e-129 465.7 316 74.7
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 6.2e-129 464.9 319 73.4
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 8.1e-129 464.5 319 74.9
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 1.4e-128 463.8 319 72.7
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 1.8e-128 463.4 319 76.5
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 2.3e-128 463.0 316 76.3
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 2.3e-128 463.0 316 74.4
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 8.9e-128 461.1 319 72.4
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 1.2e-127 460.7 316 73.1
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 1.5e-127 460.3 316 73.1
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 2.6e-127 459.5 319 72.4
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 2.6e-127 459.5 319 72.4
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 7.5e-127 458.0 316 74.7
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 1.3e-126 457.2 319 72.1
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 1.7e-126 456.8 321 73.2
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 1.7e-126 456.8 319 74.9
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 3.7e-126 455.7 318 74.5
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 4.9e-126 455.3 316 73.7
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 6.4e-126 454.9 316 74.1
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 6.4e-126 454.9 317 72.6
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 1.1e-125 454.1 319 72.1
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 1.9e-125 453.4 317 72.2
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 2.4e-125 453.0 319 72.4
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 5.4e-125 451.8 319 71.5
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 5.4e-125 451.8 317 73.8
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 2.1e-124 449.9 319 73.0
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 6.0e-124 448.4 316 73.7
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 6.0e-124 448.4 325 69.2
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 2.5e-122 443.0 326 71.5
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 2.5e-122 443.0 326 70.6
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 7.3e-122 441.4 346 66.8
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 4.7e-121 438.7 319 72.1
Oeu023525.2 Olea europaea HOM05D003579 ORTHO05D004266 1.1e-120 437.6 283 77.7
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 6.8e-120 434.9 319 71.8
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 6.8e-120 434.9 319 71.2
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 8.9e-120 434.5 335 67.5
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 7.6e-119 431.4 319 71.2
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 7.1e-117 424.9 319 69.6
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 4.6e-116 422.2 322 68.0
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 3.0e-115 419.5 319 71.2
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 1.9e-114 416.8 244 86.5
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 5.6e-114 415.2 317 69.1
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 1.2e-113 414.1 287 74.2
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 2.1e-113 413.3 317 68.8
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 2.8e-113 412.9 339 66.4
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 2.8e-113 412.9 347 64.6
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 3.6e-113 412.5 316 68.7
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 2.4e-109 399.8 318 63.2
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 7.8e-108 394.8 316 67.1
TAR028G0001 Trochodendron aralioides HOM05D003579 ORTHO05D004266 1.3e-107 394.0 243 81.5
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 1.1e-101 374.4 249 74.7
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 2.4e-101 373.2 315 62.5
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 4.2e-101 372.5 318 60.4
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 4.6e-100 369.0 319 63.0
arahy.Tifrunner.gnm1.ann1.SGC6ES Arachis hypogaea HOM05D003579 ORTHO05D004266 6.0e-100 368.6 263 71.1
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 1.0e-99 367.9 319 58.6
BcaB04g17425 Brassica carinata HOM05D003579 ORTHO05D004266 3.3e-98 362.8 275 68.7
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 3.3e-98 362.8 315 61.0
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 1.5e-95 354.0 283 65.4
Gohir.D07G065501 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.6e-89 334.0 228 73.7
Hund22317 Selenicereus undatus HOM05D003579 ORTHO05D004266 9.0e-88 328.2 223 74.9
CDE06G0014 Ceratophyllum demersum HOM05D003579 ORTHO05D004266 1.5e-82 310.8 218 73.9
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 7.4e-82 308.5 233 68.2
Psat0s1042g0080 Pisum sativum HOM05D003579 ORTHO05D004266 9.3e-77 291.6 286 58.4
CBR_g4012 Chara braunii HOM05D003579 ORTHO05D004266 5.7e-74 282.3 321 49.5
SEGI_32565 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 2.0e-66 257.3 183 68.9
QL10p037085 Quercus lobata HOM05D003579 ORTHO05D004266 3.7e-65 253.1 158 82.3
ClCG04G012750 Citrullus lanatus HOM05D003579 ORTHO05D004266 9.4e-61 238.4 220 60.0
MCO02G001 Micromonas commoda HOM05D003579 ORTHO05D004266 4.2e-53 213.0 315 42.9
Lalb_Chr14g0370481 Lupinus albus HOM05D003579 ORTHO05D004266 6.3e-49 199.1 155 69.0
Cre13.g607450 Chlamydomonas reinhardtii HOM05D003579 ORTHO05D004266 1.1e-45 188.3 355 35.8
BolC5t33211H Brassica oleracea HOM05D003579 ORTHO05D004266 3.6e-44 183.3 158 62.7
QL10p038058 Quercus lobata HOM05D003579 ORTHO05D004266 1.7e-41 174.5 96 87.5
BraA05t21815Z Brassica rapa HOM05D003579 ORTHO05D004266 1.1e-40 171.8 158 60.1
BraA05t21823Z Brassica rapa HOM05D003579 ORTHO05D004266 1.6e-39 167.9 165 57.0
Cc04_g09220 Coffea canephora HOM05D003579 ORTHO05D004266 3.5e-39 166.8 105 79.0
Oeu016195.1 Olea europaea HOM05D003579 ORTHO05D004266 2.9e-38 163.7 117 75.2
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 4.2e-37 159.8 332 37.0
C05p44830 Brassica napus HOM05D003579 ORTHO05D004266 9.8e-34 148.7 139 59.0
Pp3c3_29160 Physcomitrium patens HOM05D003579 ORTHO05D004266 9.8e-34 148.7 247 40.9
Ah.14g085880 Amaranthus hybridus HOM05D003579 ORTHO05D004266 1.3e-33 148.3 96 77.1
Glyma.15G201250 Glycine max HOM05D003579 ORTHO05D004266 1.7e-33 147.9 89 82.0
SEGI_07046 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 3.3e-29 133.7 95 70.5
arahy.Tifrunner.gnm1.ann1.IG3GCS Arachis hypogaea HOM05D000921 ORTHO05D002852 8.9e-27 125.6 90 66.7
Lj5g0002346 Lotus japonicus HOM05D003579 ORTHO05D004266 9.8e-26 122.1 98 62.2
SGA_v2.0_scaffold67G22627 Striga asiatica HOM05D003579 ORTHO05D004266 1.2e-23 115.2 97 62.9
Oeu016194.1 Olea europaea HOM05D002938 ORTHO05D002074 7.3e-21 105.9 148 48.0
Cfa023793 Carpinus fangiana HOM05D003579 ORTHO05D004266 4.7e-20 103.2 318 29.6
Lj3g0016828 Lotus japonicus HOM05D003579 ORTHO05D004266 3.1e-19 100.5 323 26.6
Lsat_1_v5_gn_6_16260 Lactuca sativa HOM05D003579 ORTHO05D025634 1.2e-18 98.6 68 70.6
Lsat_1_v5_gn_6_17001 Lactuca sativa HOM05D003579 ORTHO05D025634 1.5e-18 98.2 68 72.1
Lsat_1_v5_gn_4_76120 Lactuca sativa HOM05D002699 ORTHO05D002931 9.8e-18 95.5 76 65.8
Lsat_1_v5_gn_5_188701 Lactuca sativa HOM05D003579 ORTHO05D025634 1.1e-16 92.0 71 67.6
Lalb_Chr14g0370501 Lupinus albus HOM05D003579 ORTHO05D004266 4.6e-15 86.7 49 85.7
Sopen09g023790 Solanum pennellii HOM05D003579 ORTHO05D004266 1.3e-14 85.1 60 71.7
Sopen11g021990 Solanum pennellii HOM05D003579 ORTHO05D004266 1.3e-14 85.1 60 71.7
Lj1g0020491 Lotus japonicus HOM05D003579 ORTHO05D004266 5.0e-14 83.2 144 33.3
Lsat_1_v5_gn_2_16661 Lactuca sativa HOM05D000929 ORTHO05D003255 6.6e-14 82.8 55 67.3
Lsat_1_v5_gn_2_30601 Lactuca sativa HOM05D000929 ORTHO05D003255 2.5e-13 80.9 55 67.3
arahy.Tifrunner.gnm1.ann1.U86FK3 Arachis hypogaea HOM05D003579 ORTHO05D009264 5.2e-11 73.2 97 46.4
Lsat_1_v5_gn_6_63160 Lactuca sativa HOM05D002699 ORTHO05D002931 2.6e-10 70.9 66 59.1
Lsat_1_v5_gn_8_41041 Lactuca sativa HOM05D003579 ORTHO05D005739 7.5e-10 69.3 46 78.3
Glyma.18G156700 Glycine max HOM05D003579 ORTHO05D025634 4.9e-09 66.6 38 86.8
Lsat_1_v5_gn_3_63580 Lactuca sativa HOM05D003579 ORTHO05D004266 8.3e-09 65.9 35 85.7
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 1.1e-08 65.5 36 83.3
Lsat_1_v5_gn_3_77260 Lactuca sativa HOM05D000929 ORTHO05D003255 4.1e-08 63.5 40 70.0
SGA_v2.0_scaffold258G45738 Striga asiatica HOM05D000002 ORTHO05D000001 4.6e-07 60.1 58 56.9
Lalb_Chr14g0370491 Lupinus albus HOM05D003579 ORTHO05D004266 5.1e-06 56.6 49 53.1


User provided reference genes

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