Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 5.1e-210 734.2 376 100.0
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 1.7e-157 559.7 362 80.1
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 7.2e-148 527.7 345 76.8
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 1.7e-136 490.0 345 71.6
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 2.8e-123 446.0 345 67.5
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 4.4e-121 438.7 364 61.8
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 7.6e-113 411.4 350 61.1
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 1.3e-112 410.6 350 61.1
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 4.9e-112 408.7 365 60.3
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 6.4e-112 408.3 374 58.8
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 1.4e-111 407.1 347 61.4
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 2.1e-110 403.3 358 59.2
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 2.3e-109 399.8 369 58.0
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 3.3e-108 396.0 373 60.1
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 5.6e-108 395.2 366 57.4
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.3e-107 394.0 347 59.7
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 2.8e-107 392.9 345 61.2
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 6.2e-107 391.7 353 58.9
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 3.4e-105 386.0 346 57.8
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.2e-104 383.3 345 56.8
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 2.9e-104 382.9 369 55.8
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.9e-104 382.1 345 56.8
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 8.4e-104 381.3 346 57.2
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 1.4e-103 380.6 368 54.9
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.4e-103 379.8 345 56.5
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 5.4e-103 378.6 362 54.4
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 5.4e-103 378.6 370 55.4
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 7.1e-103 378.3 368 55.2
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 1.2e-102 377.5 347 57.3
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 1.6e-102 377.1 343 59.2
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 1.7e-101 373.6 365 56.2
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 7.3e-100 368.2 354 57.6
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 1.3e-99 367.5 359 54.6
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 1.6e-99 367.1 329 58.1
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 2.1e-99 366.7 346 58.7
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 8.1e-99 364.8 361 56.5
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 9.0e-98 361.3 360 56.4
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 3.4e-97 359.4 365 53.2
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 9.9e-97 357.8 372 54.6
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 1.7e-96 357.1 367 53.7
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.2e-96 356.7 315 60.0
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 6.4e-96 355.1 367 53.4
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 2.4e-95 353.2 349 56.2
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 5.5e-95 352.1 381 53.3
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 3.5e-94 349.4 349 53.9
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 1.3e-93 347.4 357 52.7
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 3.0e-93 346.3 343 55.1
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 8.7e-93 344.7 351 53.8
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 7.4e-92 341.7 352 54.5
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.3e-91 340.9 367 50.7
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.1e-91 340.1 318 58.2
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 8.1e-91 338.2 348 52.0
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 4.0e-90 335.9 314 56.7
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 4.0e-90 335.9 352 53.4
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 6.9e-90 335.1 351 54.1
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 1.2e-89 334.3 324 54.9
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 1.2e-89 334.3 364 53.0
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 2.6e-89 333.2 361 52.4
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 2.9e-88 329.7 351 53.6
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 1.1e-87 327.8 355 51.8
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 4.2e-87 325.9 361 51.5
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 5.5e-87 325.5 365 48.8
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.2e-86 324.3 348 53.4
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 2.7e-86 323.2 343 53.4
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.8e-85 320.5 361 51.0
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 1.8e-85 320.5 371 51.2
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 4.3e-84 315.8 347 53.0
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 7.4e-84 315.1 314 53.2
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 3.7e-83 312.8 356 49.4
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 4.8e-83 312.4 356 51.7
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.1e-82 311.2 327 53.5
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.4e-82 310.8 327 54.1
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 2.4e-82 310.1 337 52.2
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 5.3e-82 308.9 340 53.2
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 6.9e-82 308.5 370 49.5
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 1.2e-81 307.8 321 55.8
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 2.0e-81 307.0 342 51.5
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 2.6e-81 306.6 342 52.6
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 3.8e-80 302.8 334 50.6
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.5e-79 300.1 348 48.6
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 9.3e-79 298.1 326 51.2
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.2e-78 297.7 331 49.5
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.0e-77 294.7 332 50.3
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 1.5e-76 290.8 321 52.0
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 1.3e-75 287.7 313 52.1
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 1.3e-75 287.7 313 52.1
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 2.2e-75 287.0 312 51.3
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 2.2e-75 287.0 312 51.3
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 2.8e-75 286.6 340 48.5
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 1.8e-74 283.9 303 52.1
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 3.1e-74 283.1 351 49.0
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 2.0e-73 280.4 358 45.8
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 7.7e-73 278.5 344 49.1
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 2.9e-72 276.6 321 50.2
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 3.6e-70 269.6 328 48.2
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 6.1e-70 268.9 268 56.0
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 2.5e-68 263.5 332 48.2
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 4.8e-67 259.2 218 61.0
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 7.7e-65 251.9 235 56.6
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 5.1e-61 239.2 328 45.1
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 9.7e-60 235.0 165 70.9
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.1e-58 231.5 236 53.0
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 1.9e-55 220.7 308 45.5
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 7.2e-55 218.8 188 58.5
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.2e-54 218.0 195 56.9
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 2.1e-54 217.2 155 71.0
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.7e-54 216.9 213 54.5
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 2.0e-52 210.7 244 45.1
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 7.5e-52 208.8 329 39.2
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 1.9e-47 194.1 218 50.9
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 2.1e-46 190.7 153 63.4
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 6.8e-45 185.7 322 38.8
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 1.2e-41 174.9 362 36.2
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 5.9e-41 172.6 347 36.3
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 5.0e-40 169.5 275 41.1
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 8.5e-40 168.7 324 36.7
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.0e-37 161.8 176 54.0
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.0e-37 160.2 176 54.0
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 6.1e-30 136.0 201 38.8
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.0e-25 120.9 276 37.3
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 4.0e-21 106.7 89 58.4
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 5.8e-20 102.8 108 53.7
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 6.6e-16 89.4 103 50.5
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 8.3e-11 72.4 81 49.4
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.1e-10 70.1 95 49.5
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 6.0e-09 66.2 169 34.3


User provided reference genes

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