Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17724 Vaccinium macrocarpon HOM05D002972 ORTHO05D002272 2.1e-281 971.8 543 100.0
Rhsim08G0123100 Rhododendron simsii HOM05D002972 ORTHO05D002272 6.7e-171 604.7 511 67.1
CSS0037442 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 2.1e-63 247.7 334 49.4
CSS0006608 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 2.2e-57 227.6 322 47.8
Dinv10222 Davidia involucrata HOM05D002972 ORTHO05D002272 9.4e-48 195.7 322 43.2
Hma1.2p1_1114F.1_g258730 Hydrangea macrophylla HOM05D002972 ORTHO05D002272 8.8e-38 162.5 411 32.6
Cc07_g10090 Coffea canephora HOM05D002972 ORTHO05D002272 1.7e-25 121.7 353 32.6
Dinv29033 Davidia involucrata HOM05D002972 ORTHO05D002272 7.3e-24 116.3 165 47.3
Peaxi162Scf00015g00226 Petunia axillaris HOM05D002972 ORTHO05D002272 3.1e-22 110.9 191 37.7
Dinv05661 Davidia involucrata HOM05D002972 ORTHO05D002272 7.5e-21 106.3 149 47.7
Dinv41127 Davidia involucrata HOM05D002972 ORTHO05D002272 1.7e-20 105.1 149 46.3
Sopen03g039250 Solanum pennellii HOM05D002972 ORTHO05D002272 2.2e-20 104.8 203 37.9
Dinv14511 Davidia involucrata HOM05D002972 ORTHO05D002272 2.9e-20 104.4 146 46.6
Nitab4.5_0003885g0010 Nicotiana tabacum HOM05D002972 ORTHO05D002272 3.7e-20 104.0 370 29.2
Nitab4.5_0003159g0070 Nicotiana tabacum HOM05D002972 ORTHO05D002272 6.4e-20 103.2 196 39.3
Solyc03g120360.1 Solanum lycopersicum HOM05D002972 ORTHO05D002272 8.3e-20 102.8 203 37.4
PGSC0003DMG400002638 Solanum tuberosum HOM05D002972 ORTHO05D002272 2.0e-18 98.2 202 37.1
Cpa.g.sc6.181 Carica papaya HOM05D002972 ORTHO05D002272 6.0e-18 96.7 206 33.5
Peaxi162Scf00126g10126 Petunia axillaris HOM05D002972 ORTHO05D002272 1.3e-17 95.5 197 34.5
Duzib147G0607 Durio zibethinus HOM05D002972 ORTHO05D002272 2.3e-17 94.7 156 40.4
PGSC0003DMG400002637 Solanum tuberosum HOM05D002972 ORTHO05D002272 2.3e-17 94.7 159 42.1
Peaxi162Scf00015g00238 Petunia axillaris HOM05D002972 ORTHO05D002272 3.9e-17 94.0 247 30.4
Lj4A209T45 Lonicera japonica HOM05D002972 ORTHO05D002272 1.1e-16 92.4 203 35.0
Lj4A209T44 Lonicera japonica HOM05D002972 ORTHO05D002272 1.9e-16 91.7 513 26.3
Sopen03g039260 Solanum pennellii HOM05D002972 ORTHO05D002272 2.1e-15 88.2 198 33.8
COL.COLO4_22003 Corchorus olitorius HOM05D002972 ORTHO05D002272 8.1e-15 86.3 154 40.3
CAN.G438.50 Capsicum annuum HOM05D002972 ORTHO05D002272 1.1e-14 85.9 373 28.4
AUR62007622 Chenopodium quinoa HOM05D001706 ORTHO05D001789 1.1e-14 85.9 157 36.3
COL.COLO4_31049 Corchorus olitorius HOM05D002972 ORTHO05D002272 5.2e-14 83.6 165 36.4
COL.COLO4_22001 Corchorus olitorius HOM05D002972 ORTHO05D002272 6.8e-14 83.2 105 45.7
Medtr8g089530 Medicago truncatula HOM05D008992 ORTHO05D002272 4.4e-13 80.5 155 36.1
Lj1g0000579 Lotus japonicus HOM05D008992 ORTHO05D002272 1.7e-12 78.6 174 33.3
TWI09G0202 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 8.3e-12 76.3 120 38.3
PGR142G3299 Punica granatum HOM05D002972 ORTHO05D002272 1.1e-11 75.9 176 29.5
MD05G1122800 Malus domestica HOM05D002972 ORTHO05D002272 4.1e-11 73.9 87 40.2
Manes.11G096900 Manihot esculenta HOM05D002972 ORTHO05D002272 1.2e-10 72.4 201 27.4
VMungo0251G0856 Vigna mungo HOM05D008992 ORTHO05D002272 1.2e-10 72.4 338 26.6
SalBow6G4808 Salvia bowleyana HOM05D002972 ORTHO05D002272 2.1e-10 71.6 330 23.6
TPR.G35385 Trifolium pratense HOM05D008992 ORTHO05D002272 2.1e-10 71.6 148 33.8
Ciclev10025208m.g Citrus clementina HOM05D000126 ORTHO05D000085 3.5e-10 70.9 211 28.9
Manes.04G072100 Manihot esculenta HOM05D002972 ORTHO05D002272 3.5e-10 70.9 167 26.9
Psat0s921g0280 Pisum sativum HOM05D008992 ORTHO05D002272 3.5e-10 70.9 155 33.5
Sed0027632 Sechium edule HOM05D002972 ORTHO05D002272 3.5e-10 70.9 150 31.3
CANSAT25G2833 Cannabis sativa HOM05D002972 ORTHO05D002272 4.6e-10 70.5 86 38.4
Hund14008 Selenicereus undatus HOM05D002972 ORTHO05D002272 4.6e-10 70.5 159 34.6
Psat0s3155g0080 Pisum sativum HOM05D008992 ORTHO05D002272 7.8e-10 69.7 149 30.9
COL.COLO4_21920 Corchorus olitorius HOM05D000126 ORTHO05D002272 1.3e-09 68.9 192 29.2
CiPaw.05G083100 Carya illinoinensis HOM05D002972 ORTHO05D002272 1.7e-09 68.6 85 37.6
Ca_17802_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 1.7e-09 68.6 148 33.1
ClCG02G004020 Citrullus lanatus HOM05D002972 ORTHO05D002272 1.7e-09 68.6 154 29.9
MELO3C013346.2 Cucumis melo HOM05D002972 ORTHO05D002272 1.7e-09 68.6 195 26.2
Medtr8g089500 Medicago truncatula HOM05D008992 ORTHO05D002272 1.7e-09 68.6 155 31.0
Potri.004G176100 Populus trichocarpa HOM05D002972 ORTHO05D002272 1.7e-09 68.6 140 27.9
Duzib052G0730 Durio zibethinus HOM05D002972 ORTHO05D002272 2.3e-09 68.2 154 26.6
Gohir.A11G175900 Gossypium hirsutum HOM05D000126 ORTHO05D000085 2.3e-09 68.2 123 34.1
Sabra04G0118200 Salix brachista HOM05D002972 ORTHO05D002272 2.3e-09 68.2 140 27.9
TPR.G6214 Trifolium pratense HOM05D008992 ORTHO05D002272 2.3e-09 68.2 177 29.4
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 2.3e-09 68.2 154 31.2
Cpa.g.sc10.98 Carica papaya HOM05D002972 ORTHO05D002272 3.0e-09 67.8 87 34.5
FAN27G2301 Fragaria x ananassa HOM05D002972 ORTHO05D002272 3.0e-09 67.8 86 38.4
Lalb_Chr06g0163671 Lupinus albus HOM05D002972 ORTHO05D002272 3.0e-09 67.8 137 35.8
Phvul.007G019100 Phaseolus vulgaris HOM05D002972 ORTHO05D002272 3.0e-09 67.8 123 32.5
Hund14010 Selenicereus undatus HOM05D002972 ORTHO05D002272 3.0e-09 67.8 163 35.0
Thecc.01G020000 Theobroma cacao HOM05D000126 ORTHO05D000085 3.0e-09 67.8 193 29.0
Thecc.02G058300 Theobroma cacao HOM05D002972 ORTHO05D002272 3.0e-09 67.8 159 24.5
MD10G1125400 Malus domestica HOM05D002972 ORTHO05D002272 3.9e-09 67.4 142 28.9
Psat6g232000 Pisum sativum HOM05D002972 ORTHO05D002272 3.9e-09 67.4 85 38.8
Prupe.8G166700 Prunus persica HOM05D002972 ORTHO05D002272 3.9e-09 67.4 110 33.6
VMungo0720G1914 Vigna mungo HOM05D002972 ORTHO05D002272 3.9e-09 67.4 122 32.8
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.1e-09 67.0 86 38.4
Haze_02128 Corylus avellana HOM05D002972 ORTHO05D002272 6.6e-09 66.6 106 34.0
CsaV3_7G001090 Cucumis sativus L. HOM05D002972 ORTHO05D002272 6.6e-09 66.6 139 27.3
Eucgr.I01431 Eucalyptus grandis HOM05D002972 ORTHO05D002272 6.6e-09 66.6 303 24.8
Gohir.A03G205300 Gossypium hirsutum HOM05D002972 ORTHO05D002272 6.6e-09 66.6 174 24.1
QL11p050942 Quercus lobata HOM05D002972 ORTHO05D002272 6.6e-09 66.6 88 36.4
Ca_03843_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 8.6e-09 66.2 155 32.9
CiPaw.06G121300 Carya illinoinensis HOM05D002972 ORTHO05D002272 1.5e-08 65.5 107 33.6
FvH4_2g15450 Fragaria vesca HOM05D002972 ORTHO05D002272 1.5e-08 65.5 86 37.2
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.5e-08 65.5 86 37.2
Gohir.A12G036900 Gossypium hirsutum HOM05D002972 ORTHO05D002272 1.5e-08 65.5 102 33.3
Gohir.D02G226600 Gossypium hirsutum HOM05D002972 ORTHO05D002272 1.5e-08 65.5 158 24.7
Gorai.007G195600 Gossypium raimondii HOM05D000126 ORTHO05D000085 1.5e-08 65.5 121 33.9
Medtr2g022010 Medicago truncatula HOM05D008992 ORTHO05D002272 1.5e-08 65.5 143 31.5
Sed0017149 Sechium edule HOM05D002972 ORTHO05D002272 1.5e-08 65.5 110 36.4
Glyma.10G281600 Glycine max HOM05D002972 ORTHO05D002272 1.9e-08 65.1 97 34.0
Lj4g0011648 Lotus japonicus HOM05D008992 ORTHO05D002272 1.9e-08 65.1 86 40.7
Medtr8g089440 Medicago truncatula HOM05D008992 ORTHO05D002272 1.9e-08 65.1 154 29.9
Medtr8g089480 Medicago truncatula HOM05D008992 ORTHO05D002272 1.9e-08 65.1 154 29.9
TPR.G10 Trifolium pratense HOM05D002972 ORTHO05D002272 1.9e-08 65.1 85 37.6
Duzib147G1519 Durio zibethinus HOM05D000126 ORTHO05D000085 2.5e-08 64.7 213 28.6
Gorai.008G036800 Gossypium raimondii HOM05D002972 ORTHO05D002272 2.5e-08 64.7 102 33.3
Psat7g060160 Pisum sativum HOM05D008992 ORTHO05D002272 2.5e-08 64.7 154 31.8
COL.COLO4_07334 Corchorus olitorius HOM05D002972 ORTHO05D002272 3.3e-08 64.3 111 40.5
Gorai.005G254500 Gossypium raimondii HOM05D002972 ORTHO05D002272 4.3e-08 63.9 158 24.1
TPR.G6199 Trifolium pratense HOM05D008992 ORTHO05D002272 4.3e-08 63.9 152 29.6
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 5.6e-08 63.5 98 30.6
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.6e-08 63.5 83 38.6
Lj4g0010390 Lotus japonicus HOM05D008992 ORTHO05D002272 5.6e-08 63.5 196 27.6
Atru.chr5.3374 Acer truncatum HOM05D002972 ORTHO05D002272 7.3e-08 63.2 85 34.1
Manes.01G145200 Manihot esculenta HOM05D000126 ORTHO05D000085 7.3e-08 63.2 137 32.1
EL10As8g23886 Beta vulgaris HOM05D002972 ORTHO05D002272 9.5e-08 62.8 103 42.7
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 9.5e-08 62.8 142 25.4
Gohir.D12G035500 Gossypium hirsutum HOM05D002972 ORTHO05D002272 9.5e-08 62.8 102 32.4
Psat5g002240 Pisum sativum HOM05D002972 ORTHO05D002272 9.5e-08 62.8 86 36.0
TPR.G6204 Trifolium pratense HOM05D008992 ORTHO05D002272 9.5e-08 62.8 154 29.2
arahy.Tifrunner.gnm1.ann1.C8FNMN Arachis hypogaea HOM05D008992 ORTHO05D002272 1.2e-07 62.4 121 32.2
Lj4g0020153 Lotus japonicus HOM05D008992 ORTHO05D002272 1.2e-07 62.4 155 29.7
Medtr1g112660 Medicago truncatula HOM05D002972 ORTHO05D002272 1.2e-07 62.4 124 29.8
arahy.Tifrunner.gnm1.ann1.8AQR6P Arachis hypogaea HOM05D002972 ORTHO05D002272 1.6e-07 62.0 85 34.1
arahy.Tifrunner.gnm1.ann1.DENV23 Arachis hypogaea HOM05D002972 ORTHO05D002272 1.6e-07 62.0 85 34.1
Lj1g0000965 Lotus japonicus HOM05D002972 ORTHO05D002272 1.6e-07 62.0 90 38.9
Lalb_Chr21g0306941 Lupinus albus HOM05D002972 ORTHO05D002272 1.6e-07 62.0 80 40.0
Ca_13011_v3 Cicer arietinum L. HOM05D002972 ORTHO05D002272 2.1e-07 61.6 85 35.3
Eucgr.I01432 Eucalyptus grandis HOM05D002972 ORTHO05D002272 2.1e-07 61.6 149 26.8
Medtr2g006000 Medicago truncatula HOM05D008992 ORTHO05D002272 2.1e-07 61.6 155 29.7
Potri.009G136400 Populus trichocarpa HOM05D002972 ORTHO05D002272 2.1e-07 61.6 140 26.4
Lalb_Chr02g0143421 Lupinus albus HOM05D002972 ORTHO05D002272 2.8e-07 61.2 85 36.5
PGR142G3650 Punica granatum HOM05D002972 ORTHO05D002272 2.8e-07 61.2 119 31.9
arahy.Tifrunner.gnm1.ann1.1MNX0Y Arachis hypogaea HOM05D008992 ORTHO05D002272 3.6e-07 60.8 121 33.1
Ciclev10028228m.g Citrus clementina HOM05D002972 ORTHO05D002272 4.7e-07 60.5 110 29.1
Duzib264G0210 Durio zibethinus HOM05D000126 ORTHO05D000085 4.7e-07 60.5 124 33.9
Thhalv10024827m.g Eutrema salsugineum HOM05D002972 ORTHO05D002272 4.7e-07 60.5 99 34.3
Lalb_Chr07g0185621 Lupinus albus HOM05D008992 ORTHO05D002272 4.7e-07 60.5 154 30.5
TWI79G0168 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 4.7e-07 60.5 140 28.6
Glyma.20G107600 Glycine max HOM05D002972 ORTHO05D002272 6.2e-07 60.1 102 34.3
Lj5g0016622 Lotus japonicus HOM05D002972 ORTHO05D002272 6.2e-07 60.1 80 36.2
Sp4g00150 Schrenkiella parvula HOM05D002972 ORTHO05D002272 8.1e-07 59.7 105 33.3
THA.LOC104824764 Tarenaya hassleriana HOM05D002972 ORTHO05D002272 8.1e-07 59.7 118 33.1
TPR.G38492 Trifolium pratense HOM05D002972 ORTHO05D002272 8.1e-07 59.7 88 35.2
TWI09G0157 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 8.1e-07 59.7 114 36.0
SGA_v2.0_scaffold47G17653 Striga asiatica HOM05D002972 ORTHO05D002272 1.1e-06 59.3 110 36.4
Glyma.08G129502 Glycine max HOM05D008992 ORTHO05D002272 1.4e-06 58.9 100 36.0
Ca_15296_v3 Cicer arietinum L. HOM05D002972 ORTHO05D002272 1.8e-06 58.5 119 30.3
Eucgr.G01782 Eucalyptus grandis HOM05D002972 ORTHO05D002272 1.8e-06 58.5 84 36.9
AUR62010852 Chenopodium quinoa HOM05D002972 ORTHO05D002272 2.3e-06 58.2 100 35.0
A03p46120 Brassica napus HOM05D002972 ORTHO05D002272 3.1e-06 57.8 94 34.0
TWI75G0621 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 3.1e-06 57.8 165 26.1
Aa31LG6G16600 Aethionema arabicum HOM05D002972 ORTHO05D002272 4.0e-06 57.4 110 30.9
BcaB03g11788 Brassica carinata HOM05D002972 ORTHO05D002272 4.0e-06 57.4 79 34.2
BraA08t34372Z Brassica rapa HOM05D002972 ORTHO05D002272 4.0e-06 57.4 80 36.2
Migut.I00843 Erythranthe guttata HOM05D002972 ORTHO05D002272 4.0e-06 57.4 165 26.1
Glyma.06G003100 Glycine max HOM05D002972 ORTHO05D002272 4.0e-06 57.4 90 34.4
Phvul.009G118800 Phaseolus vulgaris HOM05D002972 ORTHO05D002272 4.0e-06 57.4 86 33.7
Lalb_Chr08g0246731 Lupinus albus HOM05D002972 ORTHO05D002272 5.2e-06 57.0 70 37.1
BraA07t28213Z Brassica rapa HOM05D002972 ORTHO05D002272 6.8e-06 56.6 132 27.3
CARHR294280 Cardamine hirsuta HOM05D002972 ORTHO05D002272 6.8e-06 56.6 104 32.7
CsaV3_2G016160 Cucumis sativus L. HOM05D002972 ORTHO05D002272 6.8e-06 56.6 105 31.4
Medtr3g118020 Medicago truncatula HOM05D002972 ORTHO05D002272 6.8e-06 56.6 88 35.2
Sp3g30180 Schrenkiella parvula HOM05D002972 ORTHO05D002272 6.8e-06 56.6 102 30.4
VMungo1309G1142 Vigna mungo HOM05D002972 ORTHO05D002272 6.8e-06 56.6 83 32.5
BolC3t19966H Brassica oleracea HOM05D002972 ORTHO05D002272 8.9e-06 56.2 80 36.2
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 8.9e-06 56.2 95 34.7
Dinv33133 Davidia involucrata HOM05D002972 ORTHO05D002272 8.9e-06 56.2 72 52.8
Sp4g00140 Schrenkiella parvula HOM05D002972 ORTHO05D002272 8.9e-06 56.2 111 31.5
Sed0018187 Sechium edule HOM05D002972 ORTHO05D002272 8.9e-06 56.2 79 39.2
THA.LOC104824760 Tarenaya hassleriana HOM05D002972 ORTHO05D002272 8.9e-06 56.2 110 30.0


User provided reference genes

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