Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17657 Vaccinium macrocarpon HOM05D003339 ORTHO05D003847 8.8e-40 166.4 78 100.0
Actinidia10432 Actinidia chinensis HOM05D003339 ORTHO05D003847 2.4e-37 158.3 75 98.7
Cc04_g07940 Coffea canephora HOM05D003339 ORTHO05D003847 5.9e-36 153.7 75 94.7
Dinv36840 Davidia involucrata HOM05D003339 ORTHO05D003847 5.9e-36 153.7 75 94.7
Hma1.2p1_0744F.1_g211690 Hydrangea macrophylla HOM05D003339 ORTHO05D003847 1.0e-35 152.9 73 95.9
Potri.015G055200 Populus trichocarpa HOM05D003339 ORTHO05D003847 1.3e-35 152.5 75 94.7
Eucgr.B00658 Eucalyptus grandis HOM05D003339 ORTHO05D003847 2.2e-35 151.8 75 90.7
TAR629G2627 Trochodendron aralioides HOM05D003339 ORTHO05D003847 2.9e-35 151.4 75 93.3
arahy.Tifrunner.gnm1.ann1.BZP5X4 Arachis hypogaea HOM05D003339 ORTHO05D003847 3.8e-35 151.0 73 93.2
arahy.Tifrunner.gnm1.ann1.TX18T3 Arachis hypogaea HOM05D003339 ORTHO05D003847 3.8e-35 151.0 73 93.2
CAN.G982.26 Capsicum annuum HOM05D003339 ORTHO05D003847 3.8e-35 151.0 75 93.3
CiPaw.15G117900 Carya illinoinensis HOM05D003339 ORTHO05D003847 3.8e-35 151.0 75 93.3
Hma1.2p1_0595F.1_g186200 Hydrangea macrophylla HOM05D003339 ORTHO05D003847 3.8e-35 151.0 75 92.0
Nitab4.5_0002805g0160 Nicotiana tabacum HOM05D003339 ORTHO05D003847 3.8e-35 151.0 75 93.3
Sabra15G0080000 Salix brachista HOM05D003339 ORTHO05D003847 3.8e-35 151.0 77 92.2
PGSC0003DMG400024513 Solanum tuberosum HOM05D003339 ORTHO05D003847 3.8e-35 151.0 75 93.3
Manes.05G115900 Manihot esculenta HOM05D003339 ORTHO05D003847 5.0e-35 150.6 75 93.3
Nitab4.5_0000646g0190 Nicotiana tabacum HOM05D003339 ORTHO05D003847 5.0e-35 150.6 75 93.3
Potri.012G057300 Populus trichocarpa HOM05D003339 ORTHO05D003847 5.0e-35 150.6 75 93.3
Solyc03g114590.3 Solanum lycopersicum HOM05D003339 ORTHO05D003847 5.0e-35 150.6 75 93.3
Sopen03g033660 Solanum pennellii HOM05D003339 ORTHO05D003847 5.0e-35 150.6 75 93.3
Ah.02g114360 Amaranthus hybridus HOM05D003339 ORTHO05D003847 6.5e-35 150.2 75 93.3
Lj5A139T81 Lonicera japonica HOM05D003339 ORTHO05D003847 6.5e-35 150.2 75 93.3
TAR374G1210 Trochodendron aralioides HOM05D003339 ORTHO05D003847 6.5e-35 150.2 75 92.0
ECA246G0336 Erigeron canadensis HOM05D003339 ORTHO05D003847 8.5e-35 149.8 73 93.2
HanXRQChr08g0234391 Helianthus annuus HOM05D003339 ORTHO05D003847 1.1e-34 149.4 73 91.8
Actinidia18962 Actinidia chinensis HOM05D003339 ORTHO05D003847 1.5e-34 149.1 75 93.3
PGSC0003DMG400004058 Solanum tuberosum HOM05D003339 ORTHO05D003847 1.5e-34 149.1 75 90.7
CSS0042727 Camellia sinensis var. sinensis HOM05D003339 ORTHO05D003847 1.9e-34 148.7 75 89.3
Duzib205G1372 Durio zibethinus HOM05D003339 ORTHO05D003847 1.9e-34 148.7 75 92.0
GSVIVG01008184001 Vitis vinifera HOM05D003339 ORTHO05D003847 1.9e-34 148.7 72 94.4
DCAR_015111 Daucus carota HOM05D003339 ORTHO05D003847 2.5e-34 148.3 75 89.3
Gohir.D07G062500 Gossypium hirsutum HOM05D003339 ORTHO05D003847 2.5e-34 148.3 75 90.7
Gorai.001G066000 Gossypium raimondii HOM05D003339 ORTHO05D003847 2.5e-34 148.3 75 90.7
MD14G1217900 Malus domestica HOM05D003339 ORTHO05D003847 2.5e-34 148.3 75 89.3
Sed0004218 Sechium edule HOM05D003339 ORTHO05D003847 3.2e-34 147.9 75 88.0
ClCG04G011450 Citrullus lanatus HOM05D003339 ORTHO05D003847 4.2e-34 147.5 75 86.7
ClCG06G015300 Citrullus lanatus HOM05D003339 ORTHO05D003847 4.2e-34 147.5 75 90.7
FAN08G3318 Fragaria x ananassa HOM05D003339 ORTHO05D003847 4.2e-34 147.5 75 90.7
FAN13G0388 Fragaria x ananassa HOM05D003339 ORTHO05D003847 4.2e-34 147.5 75 90.7
Gohir.A07G057700 Gossypium hirsutum HOM05D003339 ORTHO05D003847 4.2e-34 147.5 75 89.3
Prupe.5G211800 Prunus persica HOM05D003339 ORTHO05D003847 4.2e-34 147.5 75 90.7
RcHm_v2.0_Chr7g0184071 Rosa chinensis HOM05D003339 ORTHO05D003847 4.2e-34 147.5 75 90.7
Thecc.03G112700 Theobroma cacao HOM05D003339 ORTHO05D003847 5.5e-34 147.1 75 92.0
Aqoxy3G00608 Aquilegia oxysepala HOM05D003339 ORTHO05D003847 7.2e-34 146.7 75 88.0
MD06G1207400 Malus domestica HOM05D003339 ORTHO05D003847 7.2e-34 146.7 75 88.0
Aqoxy3G03800 Aquilegia oxysepala HOM05D003339 ORTHO05D003847 9.4e-34 146.4 73 89.0
EL10Ac5g11212 Beta vulgaris HOM05D003339 ORTHO05D003847 9.4e-34 146.4 75 89.3
MELO3C002061.2 Cucumis melo HOM05D003339 ORTHO05D003847 9.4e-34 146.4 75 86.7
DCAR_011591 Daucus carota HOM05D003339 ORTHO05D003847 9.4e-34 146.4 75 88.0
Oeu008244.1 Olea europaea HOM05D003339 ORTHO05D003847 9.4e-34 146.4 75 89.3
COL.COLO4_07848 Corchorus olitorius HOM05D003339 ORTHO05D003847 1.2e-33 146.0 75 90.7
FvH4_5g13060 Fragaria vesca HOM05D003339 ORTHO05D003847 1.2e-33 146.0 75 89.3
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.6e-33 145.6 75 89.3
AUR62032157 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.6e-33 145.6 75 89.3
CsaV3_1G006350 Cucumis sativus L. HOM05D003339 ORTHO05D003847 1.6e-33 145.6 75 85.3
Migut.I00403 Erythranthe guttata HOM05D003339 ORTHO05D003847 1.6e-33 145.6 75 89.3
Peaxi162Scf00017g03130 Petunia axillaris HOM05D003339 ORTHO05D003847 1.6e-33 145.6 75 93.3
Sopen06g026590 Solanum pennellii HOM05D003339 ORTHO05D003847 1.6e-33 145.6 75 89.3
Oeu001005.1 Olea europaea HOM05D003339 ORTHO05D003847 2.7e-33 144.8 75 89.3
SalBow5G5032 Salvia bowleyana HOM05D003339 ORTHO05D003847 3.6e-33 144.4 75 86.7
Hund09974 Selenicereus undatus HOM05D003339 ORTHO05D003847 3.6e-33 144.4 73 87.7
Sc12g0006950 Simmondsia chinensis HOM05D003339 ORTHO05D003847 3.6e-33 144.4 75 88.0
VMungo1215G0930 Vigna mungo HOM05D003339 ORTHO05D003847 3.6e-33 144.4 75 86.7
Atru.chr9.680 Acer truncatum HOM05D003339 ORTHO05D003847 4.7e-33 144.1 76 90.8
Gohir.D12G187800 Gossypium hirsutum HOM05D003339 ORTHO05D003847 4.7e-33 144.1 75 89.3
Glyma.05G016900 Glycine max HOM05D003339 ORTHO05D003847 6.1e-33 143.7 75 85.3
Glyma.17G083100 Glycine max HOM05D003339 ORTHO05D003847 6.1e-33 143.7 75 85.3
Phvul.003G181000 Phaseolus vulgaris HOM05D003339 ORTHO05D003847 6.1e-33 143.7 75 88.0
TWI60G0446 Tripterygium wilfordii HOM05D003339 ORTHO05D003847 6.1e-33 143.7 76 89.5
Sed0006970 Sechium edule HOM05D003339 ORTHO05D003847 8.0e-33 143.3 75 86.7
Cfa002184 Carpinus fangiana HOM05D003339 ORTHO05D003847 1.0e-32 142.9 75 86.7
Haze_25318 Corylus avellana HOM05D003339 ORTHO05D003847 1.0e-32 142.9 75 86.7
Gorai.008G201200 Gossypium raimondii HOM05D003339 ORTHO05D003847 1.0e-32 142.9 75 89.3
Sed0026229 Sechium edule HOM05D003339 ORTHO05D003847 1.0e-32 142.9 75 84.0
MSTRG.4521 Avicennia marina HOM05D003339 ORTHO05D003847 1.4e-32 142.5 75 86.7
Duzib084G1161 Durio zibethinus HOM05D003339 ORTHO05D003847 1.4e-32 142.5 75 88.0
Sed0019840 Sechium edule HOM05D003339 ORTHO05D003847 1.4e-32 142.5 75 85.3
Solyc06g069330.3 Solanum lycopersicum HOM05D003339 ORTHO05D003847 1.4e-32 142.5 75 88.0
TWI15G0752 Tripterygium wilfordii HOM05D003339 ORTHO05D003847 1.4e-32 142.5 76 88.2
PSO063G4536 Papaver somniferum HOM05D003339 ORTHO05D003847 1.8e-32 142.1 74 83.8
PGR083G2102 Punica granatum HOM05D003339 ORTHO05D003847 1.8e-32 142.1 75 85.3
TAR622G0159 Trochodendron aralioides HOM05D003339 ORTHO05D003847 1.8e-32 142.1 75 82.7
Nn3g17607 Nelumbo nucifera HOM05D003339 ORTHO05D003847 2.3e-32 141.7 75 85.3
QL10p021698 Quercus lobata HOM05D003339 ORTHO05D003847 3.0e-32 141.4 74 83.8
CDE02G0750 Ceratophyllum demersum HOM05D003339 ORTHO05D003847 4.0e-32 141.0 73 83.6
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 4.0e-32 141.0 75 86.7
Ah.11g047320 Amaranthus hybridus HOM05D003339 ORTHO05D003847 5.2e-32 140.6 73 87.7
CSS0003413 Camellia sinensis var. sinensis HOM05D003339 ORTHO05D003847 5.2e-32 140.6 76 85.5
CSS0015625 Camellia sinensis var. sinensis HOM05D003339 ORTHO05D003847 5.2e-32 140.6 76 85.5
Lj4g0005951 Lotus japonicus HOM05D003339 ORTHO05D003847 5.2e-32 140.6 75 86.7
AUR62028450 Chenopodium quinoa HOM05D003339 ORTHO05D003847 8.8e-32 139.8 75 86.7
Rhsim12G0146600 Rhododendron simsii HOM05D003339 ORTHO05D003847 8.8e-32 139.8 73 87.7
Medtr4g112900 Medicago truncatula HOM05D003339 ORTHO05D003847 1.5e-31 139.0 75 85.3
ATR0691G304 Amborella trichopoda HOM05D003339 ORTHO05D003847 2.0e-31 138.7 75 80.0
Ca_21743_v3 Cicer arietinum L. HOM05D003339 ORTHO05D003847 2.0e-31 138.7 75 84.0
Manes.01G024000 Manihot esculenta HOM05D003339 ORTHO05D003847 2.6e-31 138.3 75 85.3
TPR.G2054 Trifolium pratense HOM05D003339 ORTHO05D003847 2.6e-31 138.3 75 84.0
Lalb_Chr13g0302621 Lupinus albus HOM05D003339 ORTHO05D003847 4.4e-31 137.5 75 82.7
Thhalv10013995m.g Eutrema salsugineum HOM05D003339 ORTHO05D003847 5.7e-31 137.1 76 86.8
Gohir.A12G184800 Gossypium hirsutum HOM05D003339 ORTHO05D003847 5.7e-31 137.1 75 86.7
THA.LOC104800957 Tarenaya hassleriana HOM05D003339 ORTHO05D003847 5.7e-31 137.1 78 84.6
vmacro16467 Vaccinium macrocarpon HOM05D003339 ORTHO05D003847 5.7e-31 137.1 75 84.0
AUR62036913 Chenopodium quinoa HOM05D003339 ORTHO05D003847 7.5e-31 136.7 75 86.7
ECA247G3233 Erigeron canadensis HOM05D003339 ORTHO05D003847 7.5e-31 136.7 73 82.2
MSTRG.9563 Avicennia marina HOM05D003339 ORTHO05D003847 9.8e-31 136.3 75 84.0
SEGI_10664 Sequoiadendron giganteum HOM05D003339 ORTHO05D003847 9.8e-31 136.3 75 78.7
SEGI_21241 Sequoiadendron giganteum HOM05D003339 ORTHO05D003847 9.8e-31 136.3 75 78.7
CARHR205020 Cardamine hirsuta HOM05D003339 ORTHO05D003847 1.3e-30 136.0 76 85.5
AL6G18550 Arabidopsis lyrata HOM05D003339 ORTHO05D003847 1.7e-30 135.6 76 85.5
AT5G08160 Arabidopsis thaliana HOM05D003339 ORTHO05D003847 1.7e-30 135.6 76 85.5
Carub.0006s0706 Capsella rubella HOM05D003339 ORTHO05D003847 1.7e-30 135.6 76 85.5
Lalb_Chr23g0274071 Lupinus albus HOM05D003339 ORTHO05D003847 1.7e-30 135.6 73 82.2
Sp6g34790 Schrenkiella parvula HOM05D003339 ORTHO05D003847 1.7e-30 135.6 76 85.5
PSO782G0690 Papaver somniferum HOM05D003339 ORTHO05D003847 2.2e-30 135.2 74 81.1
HanXRQChr02g0043221 Helianthus annuus HOM05D003339 ORTHO05D003847 2.8e-30 134.8 73 82.2
MBI15_g03195_MAGBIO Magnolia biondii HOM05D003339 ORTHO05D003847 2.8e-30 134.8 73 80.8
THA.LOC104819390 Tarenaya hassleriana HOM05D003339 ORTHO05D003847 2.8e-30 134.8 78 84.6
CANSAT80G1679 Cannabis sativa HOM05D003339 ORTHO05D003847 3.7e-30 134.4 75 84.0
Gohir.A03G073200 Gossypium hirsutum HOM05D003339 ORTHO05D003847 3.7e-30 134.4 75 81.3
A10p28510 Brassica napus HOM05D003339 ORTHO05D003847 8.3e-30 133.3 76 84.2
BraA10t44899Z Brassica rapa HOM05D003339 ORTHO05D003847 8.3e-30 133.3 76 84.2
CDE02G3580 Ceratophyllum demersum HOM05D003339 ORTHO05D003847 8.3e-30 133.3 72 80.6
Gohir.D03G099700 Gossypium hirsutum HOM05D003339 ORTHO05D003847 1.1e-29 132.9 75 80.0
Gorai.003G104700 Gossypium raimondii HOM05D003339 ORTHO05D003847 1.1e-29 132.9 75 80.0
Psat4g046920 Pisum sativum HOM05D003339 ORTHO05D003847 1.8e-29 132.1 75 81.3
BcaB08g37278 Brassica carinata HOM05D003339 ORTHO05D003847 2.4e-29 131.7 76 82.9
Os09g0372800 Oryza sativa ssp. japonica HOM05D003339 ORTHO05D003847 2.4e-29 131.7 75 76.0
CDE01G0151 Ceratophyllum demersum HOM05D003339 ORTHO05D003847 3.1e-29 131.3 74 77.0
Lalb_Chr12g0197431 Lupinus albus HOM05D003339 ORTHO05D003847 5.4e-29 130.6 75 81.3
Nitab4.5_0000208g0040 Nicotiana tabacum HOM05D003339 ORTHO05D003847 5.4e-29 130.6 73 82.2
BcaB08g37280 Brassica carinata HOM05D003339 ORTHO05D003847 7.0e-29 130.2 76 81.6
C09p68790 Brassica napus HOM05D003339 ORTHO05D003847 7.0e-29 130.2 76 81.6
BolC9t59626H Brassica oleracea HOM05D003339 ORTHO05D003847 7.0e-29 130.2 76 81.6
Nitab4.5_0007617g0020 Nicotiana tabacum HOM05D003339 ORTHO05D003847 7.0e-29 130.2 73 82.2
Aa31LG3G18380 Aethionema arabicum HOM05D003339 ORTHO05D003847 9.1e-29 129.8 78 82.1
BcaB01g05625 Brassica carinata HOM05D003339 ORTHO05D003847 1.2e-28 129.4 76 81.6
C03p04130 Brassica napus HOM05D003339 ORTHO05D003847 1.2e-28 129.4 76 81.6
BraA03t09713Z Brassica rapa HOM05D003339 ORTHO05D003847 1.2e-28 129.4 76 81.6
Mapoly0217s0005 Marchantia polymorpha HOM05D003339 ORTHO05D003847 2.0e-28 128.6 72 73.6
Peaxi162Scf00119g00016 Petunia axillaris HOM05D003339 ORTHO05D003847 2.0e-28 128.6 75 81.3
BcaC03g13208 Brassica carinata HOM05D003339 ORTHO05D003847 2.7e-28 128.3 76 81.6
C02p03430 Brassica napus HOM05D003339 ORTHO05D003847 2.7e-28 128.3 76 81.6
BolC2t06304H Brassica oleracea HOM05D003339 ORTHO05D003847 2.7e-28 128.3 76 81.6
BraA02t04943Z Brassica rapa HOM05D003339 ORTHO05D003847 2.7e-28 128.3 76 81.6
Zm00001eb311400 Zea mays HOM05D003339 ORTHO05D003847 4.5e-28 127.5 72 75.0
SGA_v2.0_scaffold25G10976 Striga asiatica HOM05D003339 ORTHO05D003847 5.9e-28 127.1 66 86.4
BolC3t12945H Brassica oleracea HOM05D003339 ORTHO05D003847 1.3e-27 125.9 76 80.3
Peaxi162Scf00013g00832 Petunia axillaris HOM05D003339 ORTHO05D003847 1.3e-27 125.9 66 83.3
CAN.G648.13 Capsicum annuum HOM05D003339 ORTHO05D003847 2.2e-27 125.2 75 78.7
A03p03650 Brassica napus HOM05D003339 ORTHO05D003847 2.9e-27 124.8 77 80.5
PGSC0003DMG400000652 Solanum tuberosum HOM05D003339 ORTHO05D003847 8.5e-27 123.2 73 79.5
BcaNung05090 Brassica carinata HOM05D003339 ORTHO05D003847 1.1e-26 122.9 76 77.6
Lsat_1_v5_gn_5_24460 Lactuca sativa HOM05D003339 ORTHO05D003847 1.9e-26 122.1 79 73.4
Sopen12g019100 Solanum pennellii HOM05D003339 ORTHO05D003847 4.2e-26 120.9 73 78.1
HPP92_015560 Vanilla planifolia HOM05D003339 ORTHO05D003847 1.6e-25 119.0 69 75.4
Solyc12g038920.2 Solanum lycopersicum HOM05D003339 ORTHO05D003847 3.6e-25 117.9 73 76.7
Aa31LG11G2500 Aethionema arabicum HOM05D003339 ORTHO05D003847 8.0e-25 116.7 77 70.1
AagrBONN_evm.TU.Sc2ySwM_228.4180 Anthoceros agrestis HOM05D003339 ORTHO05D003847 1.4e-24 115.9 72 65.3
Pp3c15_12440 Physcomitrium patens HOM05D003339 ORTHO05D003847 1.8e-24 115.5 74 66.2
HPP92_023904 Vanilla planifolia HOM05D003339 ORTHO05D003847 2.3e-24 115.2 75 70.7
arahy.Tifrunner.gnm1.ann1.82AL0Q Arachis hypogaea HOM05D003339 ORTHO05D003847 5.2e-24 114.0 75 68.0
arahy.Tifrunner.gnm1.ann1.G7HP2Z Arachis hypogaea HOM05D003339 ORTHO05D003847 5.2e-24 114.0 75 68.0
arahy.Tifrunner.gnm1.ann1.M1P4SX Arachis hypogaea HOM05D003339 ORTHO05D003847 5.2e-24 114.0 75 68.0
Lsat_1_v5_gn_1_15541 Lactuca sativa HOM05D003339 ORTHO05D003847 5.2e-24 114.0 68 75.0
SGA_v2.0_scaffold19G08801 Striga asiatica HOM05D003339 ORTHO05D003847 9.8e-23 109.8 53 90.6
PSO478G5178 Papaver somniferum HOM05D003339 ORTHO05D003847 2.2e-22 108.6 75 68.0
CsaV3_1G003180 Cucumis sativus L. HOM05D003339 ORTHO05D003847 1.4e-21 105.9 54 87.0
PSO017G1130 Papaver somniferum HOM05D003339 ORTHO05D003847 1.4e-21 105.9 75 66.7
Os09g0237600 Oryza sativa ssp. japonica HOM05D003339 ORTHO05D003847 1.3e-19 99.4 74 62.2
HPP92_005302 Vanilla planifolia HOM05D003339 ORTHO05D003847 1.7e-19 99.0 75 58.7
Zm00001eb095510 Zea mays HOM05D003339 ORTHO05D003847 1.7e-19 99.0 76 61.8
HanXRQChr04g0109551 Helianthus annuus HOM05D003339 ORTHO05D003847 1.1e-18 96.3 62 72.6
SMO259G0005 Selaginella moellendorffii HOM05D003339 ORTHO05D003847 6.1e-17 90.5 72 54.2
CBR_g39726 Chara braunii HOM05D003339 ORTHO05D003847 1.4e-16 89.4 71 50.7
CSS0011891 Camellia sinensis var. sinensis HOM05D003339 ORTHO05D003847 1.1e-13 79.7 40 87.5
unitig_0.g1352 Utricularia gibba HOM05D003339 ORTHO05D003847 1.7e-11 72.4 40 80.0


User provided reference genes

Program Settings