Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 1.7e-168 595.9 297 100.0
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.1e-143 513.5 297 85.5
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.1e-143 513.5 297 85.5
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 8.0e-142 507.3 299 84.6
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 6.3e-139 497.7 367 71.7
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 7.8e-137 490.7 297 80.1
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 1.3e-131 473.4 285 81.4
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 2.7e-129 465.7 297 77.4
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 2.3e-128 462.6 296 76.0
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 8.9e-125 450.7 297 75.1
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 8.9e-125 450.7 297 75.1
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.5e-124 449.9 310 74.5
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 2.0e-124 449.5 298 75.8
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 9.8e-124 447.2 297 76.1
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 9.8e-124 447.2 297 73.7
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 2.9e-123 445.7 300 74.3
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.9e-123 445.7 297 73.7
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 4.9e-123 444.9 297 75.1
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 4.9e-123 444.9 297 73.7
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 4.9e-123 444.9 281 77.2
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 1.4e-122 443.4 297 73.1
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.9e-122 443.0 297 75.8
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.2e-122 442.2 297 73.4
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 7.0e-122 441.0 297 73.1
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 1.6e-121 439.9 291 76.3
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 6.0e-121 438.0 299 73.6
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 7.8e-121 437.6 297 74.4
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 3.0e-120 435.6 297 72.4
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 3.0e-120 435.6 321 69.8
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 1.5e-119 433.3 297 71.7
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 1.9e-119 433.0 300 72.7
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 2.5e-119 432.6 297 71.7
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 3.3e-119 432.2 297 73.4
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 7.3e-119 431.0 300 73.0
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 8.1e-118 427.6 296 73.3
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 1.4e-117 426.8 300 72.0
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.8e-117 426.4 304 70.7
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 2.3e-117 426.0 300 71.7
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 6.8e-117 424.5 300 72.3
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 2.6e-116 422.5 296 72.6
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 3.4e-116 422.2 296 72.3
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.4e-116 421.8 296 72.6
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 9.9e-116 420.6 296 70.3
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 1.7e-115 419.9 298 69.8
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 2.2e-115 419.5 301 71.4
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 2.9e-115 419.1 296 70.3
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 2.9e-115 419.1 296 70.6
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 4.9e-115 418.3 297 71.0
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 1.1e-114 417.2 296 70.6
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 3.2e-114 415.6 252 80.6
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 5.4e-114 414.8 297 70.0
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 5.4e-114 414.8 297 69.4
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 5.4e-114 414.8 232 84.5
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 7.1e-114 414.5 298 70.8
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 7.1e-114 414.5 299 71.2
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 1.2e-113 413.7 297 70.7
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 1.6e-113 413.3 297 69.4
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 2.1e-113 412.9 297 69.0
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 6.0e-113 411.4 297 69.0
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 6.0e-113 411.4 298 69.1
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 7.8e-113 411.0 297 69.4
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 1.0e-112 410.6 297 69.4
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 1.0e-112 410.6 298 69.1
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.3e-112 409.5 300 67.7
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 3.0e-112 409.1 278 73.4
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 5.1e-112 408.3 297 70.0
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 5.1e-112 408.3 245 80.4
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 8.6e-112 407.5 253 80.6
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 8.6e-112 407.5 253 79.8
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 1.9e-111 406.4 297 70.0
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 3.3e-111 405.6 300 67.7
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 3.3e-111 405.6 300 70.0
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 4.3e-111 405.2 297 67.3
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 5.6e-111 404.8 300 69.0
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 5.6e-111 404.8 296 68.9
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 9.5e-111 404.1 298 69.8
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.2e-110 403.7 299 69.6
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 1.6e-110 403.3 297 67.0
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.6e-110 402.1 284 71.8
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 3.6e-110 402.1 299 68.6
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 6.2e-110 401.4 297 67.3
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 6.2e-110 401.4 297 67.3
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 6.2e-110 401.4 297 67.3
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 8.1e-110 401.0 255 76.5
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.8e-109 399.8 332 63.6
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 2.4e-109 399.4 255 76.1
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 4.0e-109 398.7 298 69.1
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 8.9e-109 397.5 312 65.7
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 1.5e-108 396.7 297 67.0
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.5e-108 396.7 298 67.8
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 3.4e-108 395.6 255 74.5
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 7.6e-108 394.4 300 65.7
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 3.8e-107 392.1 333 62.5
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 4.9e-107 391.7 300 67.3
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 8.4e-107 391.0 254 78.0
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 4.2e-106 388.7 294 65.3
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 3.0e-104 382.5 297 66.3
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 4.3e-103 378.6 296 67.2
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.1e-101 372.5 299 63.5
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 4.0e-101 372.1 285 67.7
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 6.9e-101 371.3 302 65.6
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.5e-100 370.2 305 63.6
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.0e-100 369.8 243 75.7
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 2.6e-100 369.4 250 72.0
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 3.4e-100 369.0 226 77.4
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.4e-98 362.8 243 74.5
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 3.2e-98 362.5 221 79.2
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 2.1e-97 359.8 297 63.3
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 6.0e-97 358.2 224 76.3
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.7e-96 356.7 295 61.7
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 6.6e-96 354.8 257 71.2
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 2.8e-94 349.4 243 70.8
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 3.1e-93 345.9 298 62.1
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 9.3e-90 334.3 222 74.3
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 2.1e-89 333.2 219 74.9
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 8.7e-88 327.8 241 70.1
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 7.4e-87 324.7 226 69.0
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 1.6e-86 323.6 261 67.4
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.7e-86 322.4 209 76.6
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 2.4e-85 319.7 225 67.1
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 9.0e-85 317.8 228 67.5
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 2.6e-84 316.2 288 60.4
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 4.9e-83 312.0 213 70.9
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 1.1e-79 300.8 219 66.2
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.6e-70 270.4 281 50.2
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.8e-70 268.9 425 41.2
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 3.2e-66 256.1 228 57.9
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 7.9e-65 251.5 225 55.1
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 3.1e-61 239.6 142 81.7
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.5e-60 237.3 247 49.4
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 2.0e-60 236.9 221 52.0
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 7.2e-58 228.4 142 77.5
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 9.7e-55 218.0 133 78.9
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 1.2e-52 211.1 156 67.9
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 4.5e-52 209.1 234 45.7
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 5.9e-52 208.8 250 44.0
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.1e-50 204.5 234 44.9
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 8.8e-48 194.9 134 70.1
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 4.5e-44 182.6 168 60.1
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 3.8e-43 179.5 138 66.7
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.5e-42 176.8 112 76.8
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 4.0e-40 169.5 99 82.8
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.1e-37 161.4 97 81.4
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 1.5e-34 151.0 140 52.9
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 2.2e-30 137.1 81 80.2
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 2.8e-30 136.7 158 51.3
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 4.8e-30 136.0 107 68.2
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 1.1e-26 124.8 92 69.6
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 7.2e-26 122.1 157 47.1
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 3.0e-24 116.7 67 80.6
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 1.7e-19 100.9 120 45.0
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 5.2e-08 62.8 176 33.0
HanXRQChr02g0035921 Helianthus annuus HOM05D004985 ORTHO05D005912 6.4e-06 55.8 77 42.9


User provided reference genes

Program Settings