Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 1.2e-147 526.9 380 100.0
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 8.6e-64 248.4 303 73.6
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 4.1e-50 203.0 302 66.2
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 3.6e-46 189.9 302 64.9
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 3.4e-44 183.3 303 64.7
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 3.8e-35 153.3 304 59.5
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 1.9e-34 151.0 306 59.5
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 1.2e-33 148.3 306 59.2
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.7e-32 144.4 298 58.4
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 8.7e-32 142.1 298 57.7
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 5.6e-31 139.4 307 46.3
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 1.6e-30 137.9 299 58.9
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 2.1e-30 137.5 311 55.0
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 2.1e-30 137.5 288 58.0
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 2.1e-30 137.5 296 56.8
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 1.4e-29 134.8 302 57.6
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 1.8e-29 134.4 292 59.2
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 2.4e-29 134.0 294 56.8
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 3.1e-29 133.7 306 56.5
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 3.1e-29 133.7 303 55.1
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 3.1e-29 133.7 303 56.1
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 6.9e-29 132.5 295 57.3
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 4.4e-28 129.8 297 58.6
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 7.6e-28 129.0 304 55.9
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 7.6e-28 129.0 289 56.4
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 7.6e-28 129.0 302 55.6
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 2.2e-27 127.5 302 57.6
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 2.2e-27 127.5 296 58.4
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 1.1e-26 125.2 294 55.8
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 1.9e-26 124.4 294 55.1
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 7.1e-26 122.5 289 56.1
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 9.3e-26 122.1 298 57.4
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 1.2e-25 121.7 299 54.8
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 1.2e-25 121.7 296 57.1
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 1.2e-25 121.7 295 55.9
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 2.7e-25 120.6 306 55.2
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 3.5e-25 120.2 293 54.9
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 3.5e-25 120.2 291 55.3
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 6.0e-25 119.4 295 57.3
vmacro11912 Vaccinium macrocarpon HOM05D005055 ORTHO05D006327 6.0e-25 119.4 73 84.9
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 2.3e-24 117.5 290 55.5
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 2.3e-24 117.5 298 55.7
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 2.3e-24 117.5 297 56.2
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 5.1e-24 116.3 287 56.1
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 6.6e-24 115.9 290 55.2
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.1e-23 115.2 287 55.7
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.9e-23 114.4 287 55.7
Oeu042209.2 Olea europaea HOM05D006475 ORTHO05D007969 4.3e-23 113.2 401 44.9
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 5.6e-23 112.8 294 54.4
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 1.3e-22 111.7 294 56.8
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 1.3e-22 111.7 294 55.4
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 2.1e-22 110.9 296 53.7
TAR375G0514 Trochodendron aralioides HOM05D006475 ORTHO05D007969 4.8e-22 109.8 227 64.8
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 8.1e-22 109.0 304 55.3
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 8.1e-22 109.0 101 57.4
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 1.1e-21 108.6 299 54.5
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 1.8e-21 107.8 294 54.1
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 2.4e-21 107.5 100 58.0
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 3.1e-21 107.1 287 55.1
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 4.0e-21 106.7 309 52.8
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 5.3e-21 106.3 289 54.3
Rhsim06G0205400 Rhododendron simsii HOM05D005055 ORTHO05D006327 6.9e-21 105.9 77 75.3
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 9.0e-21 105.5 297 57.9
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 2.0e-20 104.4 292 54.8
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 2.0e-20 104.4 292 54.8
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 2.6e-20 104.0 292 54.5
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 2.6e-20 104.0 100 58.0
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 2.6e-20 104.0 292 54.5
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 3.4e-20 103.6 289 55.0
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 4.5e-20 103.2 100 56.0
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 5.8e-20 102.8 100 58.0
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 7.6e-20 102.4 115 50.4
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 9.9e-20 102.1 99 58.6
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.3e-19 101.7 294 53.7
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 3.8e-19 100.1 101 53.5
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 8.4e-19 99.0 101 52.5
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 8.4e-19 99.0 101 52.5
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 8.4e-19 99.0 294 53.1
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 1.4e-18 98.2 303 42.9
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 1.9e-18 97.8 102 52.0
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.9e-18 97.8 102 53.9
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.9e-18 97.8 294 52.4
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 1.9e-18 97.8 99 55.6
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 2.4e-18 97.4 292 53.4
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 3.2e-18 97.1 300 51.0
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 3.2e-18 97.1 292 54.1
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 4.2e-18 96.7 303 50.8
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 7.1e-18 95.9 99 51.5
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 9.3e-18 95.5 290 52.4
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 1.2e-17 95.1 108 48.1
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 1.6e-17 94.7 293 51.5
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 3.5e-17 93.6 290 51.0
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 4.6e-17 93.2 289 52.9
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 7.9e-17 92.4 288 51.4
QL08p050707 Quercus lobata HOM05D006475 ORTHO05D007969 3.0e-16 90.5 226 61.5
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 5.6e-15 86.3 298 52.3
Nitab4.5_0001175g0110 Nicotiana tabacum HOM05D006475 ORTHO05D007969 3.7e-14 83.6 223 32.3
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 4.8e-14 83.2 119 46.2
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 4.8e-14 83.2 99 46.5
Dinv28011 Davidia involucrata HOM05D006475 ORTHO05D007969 8.1e-14 82.4 125 45.6
FAN18G4370 Fragaria x ananassa HOM05D006475 ORTHO05D007969 8.1e-14 82.4 227 59.5
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 3.1e-13 80.5 324 49.7
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 6.9e-13 79.3 119 44.5
Nitab4.5_0001175g0040 Nicotiana tabacum HOM05D006475 ORTHO05D007969 6.9e-13 79.3 215 47.0
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 5.8e-12 76.3 100 42.0
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 7.6e-12 75.9 107 43.0
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 7.6e-12 75.9 117 41.0
Dinv14969 Davidia involucrata HOM05D005055 ORTHO05D006327 3.8e-11 73.6 79 59.5
SalBow8G2403 Salvia bowleyana HOM05D005055 ORTHO05D006327 6.5e-11 72.8 71 59.2
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 6.5e-11 72.8 287 50.2
CSS0050211 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D001408 1.9e-10 71.2 76 57.9
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 4.2e-10 70.1 99 40.4
Actinidia12556 Actinidia chinensis HOM05D005055 ORTHO05D006327 5.5e-10 69.7 73 60.3
Sc07g0008230 Simmondsia chinensis HOM05D006475 ORTHO05D007969 2.7e-09 67.4 219 57.1
Peaxi162Scf01503g00021 Petunia axillaris HOM05D005055 ORTHO05D006327 4.6e-09 66.6 76 57.9
ClCG07G009980 Citrullus lanatus HOM05D005055 ORTHO05D006327 7.9e-09 65.9 78 52.6
Nitab4.5_0000035g0040 Nicotiana tabacum HOM05D005055 ORTHO05D006327 7.9e-09 65.9 76 55.3
Sed0010915 Sechium edule HOM05D005055 ORTHO05D006327 7.9e-09 65.9 102 48.0
arahy.Tifrunner.gnm1.ann1.79230D Arachis hypogaea HOM05D006475 ORTHO05D007969 1.0e-08 65.5 102 42.2
CiPaw.11G163000 Carya illinoinensis HOM05D005055 ORTHO05D006327 1.0e-08 65.5 74 52.7
Manes.15G092000 Manihot esculenta HOM05D005055 ORTHO05D006327 1.0e-08 65.5 73 49.3
Nitab4.5_0005440g0050 Nicotiana tabacum HOM05D005055 ORTHO05D006327 1.0e-08 65.5 76 55.3
Nitab4.5_0000532g0060 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.3e-08 65.1 34 85.3
Oeu025338.1 Olea europaea HOM05D005055 ORTHO05D006327 3.0e-08 63.9 72 56.9
Cfa019592 Carpinus fangiana HOM05D005055 ORTHO05D006327 3.9e-08 63.5 74 51.4
Haze_09351 Corylus avellana HOM05D005055 ORTHO05D006327 6.7e-08 62.8 74 51.4
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 8.7e-08 62.4 298 51.7
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 1.1e-07 62.0 95 41.1
Cc05_g11380 Coffea canephora HOM05D005055 ORTHO05D006327 1.5e-07 61.6 76 51.3
TAR629G2461 Trochodendron aralioides HOM05D005055 ORTHO05D006327 1.5e-07 61.6 63 60.3
Nn1g04357 Nelumbo nucifera HOM05D005055 ORTHO05D006327 3.3e-07 60.5 65 58.5
Hund02369 Selenicereus undatus HOM05D005055 ORTHO05D006327 3.3e-07 60.5 72 55.6
Ciclev10008222m.g Citrus clementina HOM05D005055 ORTHO05D006327 5.7e-07 59.7 39 82.1
PGSC0003DMG400015380 Solanum tuberosum HOM05D005055 ORTHO05D006327 1.3e-06 58.5 73 56.2
Potri.001G376600 Populus trichocarpa HOM05D005055 ORTHO05D006327 1.6e-06 58.2 76 51.3
Solyc12g014190.2 Solanum lycopersicum HOM05D005055 ORTHO05D006327 1.6e-06 58.2 73 56.2
Sopen12g005980 Solanum pennellii HOM05D005055 ORTHO05D006327 1.6e-06 58.2 73 56.2
Migut.M00745 Erythranthe guttata HOM05D005055 ORTHO05D006327 2.1e-06 57.8 80 47.5
Gohir.D08G138080 Gossypium hirsutum HOM05D006475 ORTHO05D007969 2.1e-06 57.8 34 79.4
Lj1A833T50 Lonicera japonica HOM05D005055 ORTHO05D006327 2.1e-06 57.8 77 49.4
QL08p026888 Quercus lobata HOM05D005055 ORTHO05D006327 2.1e-06 57.8 47 66.0
Sc16g0007450 Simmondsia chinensis HOM05D005055 ORTHO05D006327 2.8e-06 57.4 57 57.9
GSVIVG01014230001 Vitis vinifera HOM05D005055 ORTHO05D006327 3.7e-06 57.0 56 64.3
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 6.2e-06 56.2 310 46.1
PGR083G1414 Punica granatum HOM05D005055 ORTHO05D006327 6.2e-06 56.2 81 48.1
Gorai.004G141500 Gossypium raimondii HOM05D006475 ORTHO05D007969 8.2e-06 55.8 34 76.5


User provided reference genes

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