Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17323 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 2.7e-197 691.8 345 100.0
vmacro17325 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 3.9e-180 634.8 407 81.3
vmacro17324 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 1.9e-134 483.0 329 77.5
CSS0010874 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 1.0e-79 301.2 285 57.5
CSS0013591 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 1.7e-79 300.4 285 57.5
CSS0016313 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 4.3e-78 295.8 286 57.0
CSS0049849 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 5.8e-67 258.8 285 53.0
COL.COLO4_12486 Corchorus olitorius HOM05D008040 ORTHO05D010075 4.7e-45 186.0 271 41.0
TWI77G0815 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 9.0e-44 181.8 275 39.3
Sabra08G0010200 Salix brachista HOM05D008040 ORTHO05D010075 1.0e-39 168.3 271 39.1
Nitab4.5_0005142g0030 Nicotiana tabacum HOM05D008040 ORTHO05D010075 3.0e-39 166.8 236 37.7
Manes.09G072126 Manihot esculenta HOM05D008040 ORTHO05D010075 3.9e-39 166.4 265 39.6
COL.COLO4_10414 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.9e-38 164.1 279 39.1
COL.COLO4_31566 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.6e-37 161.0 273 37.7
COL.COLO4_31564 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.4e-36 157.9 273 36.6
COL.COLO4_30844 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.7e-34 151.0 273 36.3
AUR62017713 Chenopodium quinoa HOM05D008040 ORTHO05D010075 2.2e-34 150.6 255 38.8
Potri.013G109900 Populus trichocarpa HOM05D008040 ORTHO05D010075 2.9e-34 150.2 279 38.0
TWI12G0677 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 2.9e-34 150.2 295 36.9
Potri.013G110300 Populus trichocarpa HOM05D008040 ORTHO05D010075 6.4e-34 149.1 279 36.9
COL.COLO4_31563 Corchorus olitorius HOM05D008040 ORTHO05D010075 2.4e-33 147.1 277 35.0
TWI12G0410 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 1.6e-32 144.4 313 35.1
EL10Ac2g04156 Beta vulgaris HOM05D008040 ORTHO05D010075 3.5e-32 143.3 257 38.9
COL.COLO4_31567 Corchorus olitorius HOM05D008040 ORTHO05D010075 6.0e-32 142.5 273 34.1
COL.COLO4_10419 Corchorus olitorius HOM05D026534 ORTHO05D010075 1.0e-31 141.7 279 36.6
Ciclev10006596m.g Citrus clementina HOM05D008040 ORTHO05D010075 3.3e-30 136.7 278 35.3
PSO761G0098 Papaver somniferum HOM05D008040 ORTHO05D010075 1.2e-27 128.3 218 37.6
AUR62035995 Chenopodium quinoa HOM05D008040 ORTHO05D010075 7.6e-27 125.6 224 39.3
Oeu045297.1 Olea europaea HOM05D008040 ORTHO05D010075 2.2e-26 124.0 194 35.6
AUR62008579 Chenopodium quinoa HOM05D008040 ORTHO05D010075 4.9e-26 122.9 245 33.1
Oeu009728.1 Olea europaea HOM05D008040 ORTHO05D010075 3.2e-25 120.2 216 36.6
QL04p017690 Quercus lobata HOM05D008040 ORTHO05D010075 2.1e-24 117.5 250 35.6
RcHm_v2.0_Chr2g0102561 Rosa chinensis HOM05D008040 ORTHO05D010075 3.5e-24 116.7 237 32.9
Ciclev10026974m.g Citrus clementina HOM05D008040 ORTHO05D010075 1.0e-23 115.2 240 32.1
QL04p017640 Quercus lobata HOM05D008040 ORTHO05D010075 1.3e-23 114.8 250 35.2
MD12G1051600 Malus domestica HOM05D008040 ORTHO05D010075 2.3e-23 114.0 279 31.2
Prupe.7G151200 Prunus persica HOM05D008040 ORTHO05D010075 5.1e-23 112.8 216 34.3
MD12G1211200 Malus domestica HOM05D008040 ORTHO05D010075 1.9e-22 110.9 212 33.5
FAN19G2662 Fragaria x ananassa HOM05D008040 ORTHO05D010075 9.6e-22 108.6 218 35.3
SGA_v2.0_scaffold286G47111 Striga asiatica HOM05D008040 ORTHO05D010075 9.6e-22 108.6 221 33.5
PSO339G3463 Papaver somniferum HOM05D008040 ORTHO05D010075 1.6e-21 107.8 217 34.6
Oeu009732.1 Olea europaea HOM05D001586 ORTHO05D001543 2.8e-21 107.1 217 35.0
PSO017G2897 Papaver somniferum HOM05D008040 ORTHO05D010075 6.2e-21 105.9 217 34.1
RcHm_v2.0_Chr2g0102901 Rosa chinensis HOM05D008040 ORTHO05D010075 6.2e-21 105.9 223 34.5
MBI01_g31985_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 2.4e-20 104.0 211 34.6
SGA_v2.0_scaffold147G36326 Striga asiatica HOM05D008040 ORTHO05D010075 2.4e-20 104.0 216 35.6
FvH4_1g14191 Fragaria vesca HOM05D008040 ORTHO05D010075 3.1e-20 103.6 278 30.2
FAN23G2403 Fragaria x ananassa HOM05D008040 ORTHO05D010075 1.2e-19 101.7 234 34.2
Ah.07g206250 Amaranthus hybridus HOM05D008040 ORTHO05D010075 2.0e-19 100.9 231 32.0
SGA_v2.0_scaffold286G47115 Striga asiatica HOM05D008040 ORTHO05D010075 2.6e-19 100.5 224 32.6
Sabra08G0010400 Salix brachista HOM05D008040 ORTHO05D010075 5.8e-19 99.4 152 40.8
Aqoxy6G00905 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 1.9e-17 94.4 225 32.9
Potri.008G016300 Populus trichocarpa HOM05D008040 ORTHO05D010075 2.5e-17 94.0 124 44.4
FAN26G0836 Fragaria x ananassa HOM05D008040 ORTHO05D010075 3.2e-17 93.6 210 33.8
Potri.008G016150 Populus trichocarpa HOM05D008040 ORTHO05D010075 7.1e-17 92.4 125 44.8
FAN19G2417 Fragaria x ananassa HOM05D008040 ORTHO05D010075 9.3e-17 92.0 164 39.0
FvH4_1g14071 Fragaria vesca HOM05D008040 ORTHO05D010075 1.2e-16 91.7 158 38.6
Ah.02g122840 Amaranthus hybridus HOM05D008040 ORTHO05D010075 2.7e-16 90.5 194 33.0
Aqoxy3G00584 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 1.1e-14 85.1 239 27.6
MBI05_g44031_MAGBIO Magnolia biondii HOM05D016110 ORTHO05D000491 1.9e-14 84.3 258 29.1
Nitab4.5_0001552g0010 Nicotiana tabacum HOM05D008040 ORTHO05D010075 9.7e-14 82.0 175 30.3
MBI05_g35610_MAGBIO Magnolia biondii HOM05D016110 ORTHO05D000491 4.8e-13 79.7 224 30.4
PSO161G0051 Papaver somniferum HOM05D008326 ORTHO05D001155 8.2e-13 79.0 284 28.2
Potri.013G109701 Populus trichocarpa HOM05D008040 ORTHO05D010075 1.8e-12 77.8 143 39.2
FAN28G2855 Fragaria x ananassa HOM05D008040 ORTHO05D010075 2.0e-11 74.3 161 34.8
QL09p019845 Quercus lobata HOM05D011629 ORTHO05D013267 2.0e-11 74.3 219 28.3
COL.COLO4_14085 Corchorus olitorius HOM05D000206 ORTHO05D002863 3.4e-11 73.6 274 28.5
Solyc05g051583.1 Solanum lycopersicum HOM05D000664 ORTHO05D000491 3.4e-11 73.6 219 28.3
Lsat_1_v5_gn_5_31100 Lactuca sativa HOM05D001729 ORTHO05D001155 5.9e-11 72.8 216 28.2
MD15G1268400 Malus domestica HOM05D008040 ORTHO05D010075 1.3e-10 71.6 181 30.9
DCAR_004585 Daucus carota HOM05D001729 ORTHO05D001155 1.7e-10 71.2 207 28.0
Oeu045300.1 Olea europaea HOM05D008040 ORTHO05D013267 2.2e-10 70.9 177 28.8
PSO339G3291 Papaver somniferum HOM05D008326 ORTHO05D001155 2.2e-10 70.9 226 29.2
PSO801G0801 Papaver somniferum HOM05D008326 ORTHO05D001155 2.2e-10 70.9 234 28.6
PSO407G0006 Papaver somniferum HOM05D008326 ORTHO05D001155 2.9e-10 70.5 218 28.4
Nn8g41009 Nelumbo nucifera HOM05D000664 ORTHO05D000491 3.8e-10 70.1 191 30.4
Nitab4.5_0009785g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 5.0e-10 69.7 216 25.5
Os07g0535700 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 5.0e-10 69.7 262 25.6
Medtr4g007240 Medicago truncatula HOM05D012242 ORTHO05D001155 6.5e-10 69.3 212 27.8
COL.COLO4_14086 Corchorus olitorius HOM05D011629 ORTHO05D013267 1.1e-09 68.6 276 28.6
PGSC0003DMG400021824 Solanum tuberosum HOM05D000664 ORTHO05D000491 1.1e-09 68.6 221 30.3
Medtr3g011540 Medicago truncatula HOM05D011629 ORTHO05D013267 1.4e-09 68.2 148 33.1
PSO063G7044 Papaver somniferum HOM05D008326 ORTHO05D001155 1.4e-09 68.2 209 27.3
Rhsim01G0090200 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.4e-09 68.2 167 31.1
Os07g0535600 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 1.9e-09 67.8 209 24.9
PSO017G4273 Papaver somniferum HOM05D000789 ORTHO05D001155 1.9e-09 67.8 193 28.0
Zm00001eb115740 Zea mays HOM05D009359 ORTHO05D000491 1.9e-09 67.8 275 25.1
Zm00001eb116720 Zea mays HOM05D009359 ORTHO05D000491 1.9e-09 67.8 246 27.2
COL.COLO4_31801 Corchorus olitorius HOM05D000664 ORTHO05D000491 2.5e-09 67.4 210 25.7
Dinv15685 Davidia involucrata HOM05D000002 ORTHO05D000001 2.5e-09 67.4 97 39.2
Os07g0535100 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 2.5e-09 67.4 262 25.6
Os07g0535200 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 4.2e-09 66.6 262 25.6
RcHm_v2.0_Chr6g0292091 Rosa chinensis HOM05D001729 ORTHO05D001155 4.2e-09 66.6 219 27.9
HanXRQChr16g0525271 Helianthus annuus HOM05D000664 ORTHO05D000491 5.5e-09 66.2 227 26.4
Lsat_1_v5_gn_5_30901 Lactuca sativa HOM05D001729 ORTHO05D001155 5.5e-09 66.2 217 26.3
Lj2A1107G68 Lonicera japonica HOM05D001729 ORTHO05D001155 5.5e-09 66.2 223 27.8
arahy.Tifrunner.gnm1.ann1.6LG1IJ Arachis hypogaea HOM05D002420 ORTHO05D002422 7.2e-09 65.9 220 25.5
Duzib177G1102 Durio zibethinus HOM05D000664 ORTHO05D000491 7.2e-09 65.9 215 24.2
Psat2g144440 Pisum sativum HOM05D011629 ORTHO05D013267 7.2e-09 65.9 134 35.1
COL.COLO4_31760 Corchorus olitorius HOM05D000664 ORTHO05D000491 1.2e-08 65.1 213 25.8
COL.COLO4_32997 Corchorus olitorius HOM05D000664 ORTHO05D000491 1.2e-08 65.1 207 26.1
Duzib177G0141 Durio zibethinus HOM05D000664 ORTHO05D000491 1.2e-08 65.1 222 27.5
FvH4_3g32490 Fragaria vesca HOM05D000664 ORTHO05D000491 1.2e-08 65.1 88 37.5
FAN11G0439 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.2e-08 65.1 88 37.5
Duzib106G0932 Durio zibethinus HOM05D000664 ORTHO05D000491 1.6e-08 64.7 267 25.5
Sabra15G0014700 Salix brachista HOM05D001729 ORTHO05D001155 1.6e-08 64.7 239 25.9
Ciclev10005086m.g Citrus clementina HOM05D000664 ORTHO05D000491 2.1e-08 64.3 293 24.9
Duzib177G1156 Durio zibethinus HOM05D000664 ORTHO05D000491 2.1e-08 64.3 210 26.2
FAN16G1475 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.1e-08 64.3 129 30.2
Lsat_1_v5_gn_6_92061 Lactuca sativa HOM05D001729 ORTHO05D001155 2.1e-08 64.3 214 25.2
Os03g0664300 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 2.1e-08 64.3 222 27.0
SGA_v2.0_scaffold69G23275 Striga asiatica HOM05D000664 ORTHO05D000491 2.1e-08 64.3 160 31.2
Zm00001eb116670 Zea mays HOM05D009359 ORTHO05D000491 2.1e-08 64.3 247 27.1
FAN21G0725 Fragaria x ananassa HOM05D000026 ORTHO05D000491 2.7e-08 63.9 88 37.5
DCAR_018081 Daucus carota HOM05D000664 ORTHO05D000491 3.6e-08 63.5 211 28.4
Nitab4.5_0000375g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 3.6e-08 63.5 263 25.1
Rhsim08G0168000 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.6e-08 63.5 214 28.5
Lsat_1_v5_gn_5_38300 Lactuca sativa HOM05D008898 ORTHO05D001155 4.6e-08 63.2 225 26.7
Zm00001eb366400 Zea mays HOM05D000664 ORTHO05D000491 6.1e-08 62.8 216 26.9
Lj3A384G19 Lonicera japonica HOM05D000664 ORTHO05D000491 7.9e-08 62.4 270 22.2
Gohir.A11G278000 Gossypium hirsutum HOM05D000664 ORTHO05D000491 1.0e-07 62.0 164 28.0
HanXRQChr16g0525761 Helianthus annuus HOM05D000664 ORTHO05D000491 1.4e-07 61.6 227 26.0
Lsat_1_v5_gn_5_38981 Lactuca sativa HOM05D008898 ORTHO05D001155 1.4e-07 61.6 231 25.1
TPR.G3308 Trifolium pratense HOM05D011629 ORTHO05D013267 1.4e-07 61.6 136 31.6
COL.COLO4_38550 Corchorus olitorius HOM05D000664 ORTHO05D000491 1.8e-07 61.2 222 25.7
Gorai.007G311900 Gossypium raimondii HOM05D000664 ORTHO05D000491 1.8e-07 61.2 159 28.3
PSO210G0402 Papaver somniferum HOM05D008326 ORTHO05D001155 1.8e-07 61.2 200 25.0
Sabra09G0127200 Salix brachista HOM05D001729 ORTHO05D001155 1.8e-07 61.2 213 24.9
arahy.Tifrunner.gnm1.ann1.XHBX5X Arachis hypogaea HOM05D002420 ORTHO05D002422 2.3e-07 60.8 220 25.5
Lsat_1_v5_gn_5_38761 Lactuca sativa HOM05D008898 ORTHO05D001155 2.3e-07 60.8 213 24.9
COL.COLO4_13626 Corchorus olitorius HOM05D000664 ORTHO05D000491 3.0e-07 60.5 220 27.3
HanXRQChr04g0121411 Helianthus annuus HOM05D001729 ORTHO05D001155 3.0e-07 60.5 216 25.9
Lsat_1_v5_gn_3_40560 Lactuca sativa HOM05D000664 ORTHO05D000491 3.0e-07 60.5 197 27.9
Gohir.D11G237600 Gossypium hirsutum HOM05D000664 ORTHO05D000491 3.9e-07 60.1 207 24.6
Gorai.007G251000 Gossypium raimondii HOM05D000664 ORTHO05D000491 3.9e-07 60.1 207 24.6
DCAR_026305 Daucus carota HOM05D000664 ORTHO05D000491 5.1e-07 59.7 224 27.7
Dinv23189 Davidia involucrata HOM05D000571 ORTHO05D000435 6.7e-07 59.3 172 27.3
PSO063G5348 Papaver somniferum HOM05D002420 ORTHO05D002422 6.7e-07 59.3 280 27.1
Psat5g142640 Pisum sativum HOM05D010448 ORTHO05D012537 6.7e-07 59.3 223 27.4
Rhsim03G0162200 Rhododendron simsii HOM05D000664 ORTHO05D000491 6.7e-07 59.3 230 27.0
vmacro20419 Vaccinium macrocarpon HOM05D002420 ORTHO05D002422 6.7e-07 59.3 296 28.7
CANSAT01G0762 Cannabis sativa HOM05D011629 ORTHO05D013267 8.8e-07 58.9 233 27.5
CANSAT01G1414 Cannabis sativa HOM05D011629 ORTHO05D013267 8.8e-07 58.9 233 27.5
COL.COLO4_38551 Corchorus olitorius HOM05D000664 ORTHO05D000491 8.8e-07 58.9 211 25.6
DCAR_021781 Daucus carota HOM05D008040 ORTHO05D010075 8.8e-07 58.9 158 30.4
Gohir.A11G224210 Gossypium hirsutum HOM05D000664 ORTHO05D000491 8.8e-07 58.9 207 24.6
TPR.G3336 Trifolium pratense HOM05D012242 ORTHO05D001155 8.8e-07 58.9 192 27.6
PSO170G1835 Papaver somniferum HOM05D000664 ORTHO05D000491 1.1e-06 58.5 222 26.1
PSO675G7142 Papaver somniferum HOM05D008326 ORTHO05D001155 1.1e-06 58.5 210 22.9
RcHm_v2.0_Chr5g0059531 Rosa chinensis HOM05D000664 ORTHO05D000491 1.1e-06 58.5 105 35.2
Thecc.05G238100 Theobroma cacao HOM05D000664 ORTHO05D000491 1.1e-06 58.5 207 24.6
CAN.G467.4 Capsicum annuum HOM05D000664 ORTHO05D000491 1.5e-06 58.2 204 26.0
Duzib106G0771 Durio zibethinus HOM05D000664 ORTHO05D000491 1.5e-06 58.2 223 23.8
Hma1.2p1_0432F.1_g152020 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 1.5e-06 58.2 253 26.5
PSO210G7271 Papaver somniferum HOM05D008326 ORTHO05D001155 1.5e-06 58.2 217 26.7
Thecc.03G149600 Theobroma cacao HOM05D000664 ORTHO05D000491 1.5e-06 58.2 202 26.7
Aqoxy7G01734 Aquilegia oxysepala HOM05D015194 ORTHO05D010440 1.9e-06 57.8 245 24.1
AUR62007095 Chenopodium quinoa HOM05D000664 ORTHO05D000491 1.9e-06 57.8 194 32.0
COL.COLO4_34020 Corchorus olitorius HOM05D001729 ORTHO05D001155 1.9e-06 57.8 215 24.2
Lsat_1_v5_gn_0_16480 Lactuca sativa HOM05D008898 ORTHO05D001155 1.9e-06 57.8 213 27.2
Peaxi162Scf01164g00027 Petunia axillaris HOM05D008706 ORTHO05D010440 1.9e-06 57.8 234 23.5
Potri.013G067800 Populus trichocarpa HOM05D000664 ORTHO05D000491 1.9e-06 57.8 252 25.0
Migut.C00040 Erythranthe guttata HOM05D000007 ORTHO05D000521 2.5e-06 57.4 239 23.4
HanXRQChr15g0474331 Helianthus annuus HOM05D008898 ORTHO05D001155 2.5e-06 57.4 151 30.5
PSO325G0007 Papaver somniferum HOM05D000664 ORTHO05D000491 2.5e-06 57.4 222 26.1
Sabra13G0059200 Salix brachista HOM05D000664 ORTHO05D000491 2.5e-06 57.4 240 27.1
PGSC0003DMG400009874 Solanum tuberosum HOM05D008706 ORTHO05D010440 2.5e-06 57.4 216 25.9
HanXRQChr15g0474381 Helianthus annuus HOM05D008898 ORTHO05D001155 3.3e-06 57.0 151 31.1
HanXRQChr16g0525541 Helianthus annuus HOM05D000664 ORTHO05D000491 3.3e-06 57.0 220 24.1
Os01g0824700 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 4.3e-06 56.6 226 24.8
Actinidia26989 Actinidia chinensis HOM05D007779 ORTHO05D010440 5.7e-06 56.2 203 26.1
Thecc.05G238200 Theobroma cacao HOM05D000664 ORTHO05D000491 5.7e-06 56.2 206 23.3
Aqoxy1G00049 Aquilegia oxysepala HOM05D015194 ORTHO05D010440 7.4e-06 55.8 241 24.9
Lsat_1_v5_gn_4_180620 Lactuca sativa HOM05D008898 ORTHO05D001155 7.4e-06 55.8 219 26.9
Lsat_1_v5_gn_9_51481 Lactuca sativa HOM05D000664 ORTHO05D000491 7.4e-06 55.8 231 28.1
Medtr4g134560 Medicago truncatula HOM05D000007 ORTHO05D000521 7.4e-06 55.8 190 25.3
PSO339G1193 Papaver somniferum HOM05D008326 ORTHO05D001155 7.4e-06 55.8 209 25.8
PGSC0003DMG400040438 Solanum tuberosum HOM05D000664 ORTHO05D000491 7.4e-06 55.8 147 28.6
Migut.M00303 Erythranthe guttata HOM05D000007 ORTHO05D000039 9.7e-06 55.5 217 23.5
PSO339G5554 Papaver somniferum HOM05D000664 ORTHO05D000491 9.7e-06 55.5 129 27.9


User provided reference genes

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