Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.3e-195 684.5 349 100.0
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 8.3e-114 414.5 282 77.7
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 8.6e-95 351.3 292 66.4
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.5e-86 323.9 291 61.9
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 9.0e-76 288.1 298 59.1
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 2.7e-72 276.6 295 55.3
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 3.5e-72 276.2 294 55.4
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 9.0e-60 235.0 290 50.7
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 7.6e-59 231.9 291 50.5
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.9e-58 229.2 292 50.0
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 4.2e-57 226.1 295 49.2
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 9.3e-57 224.9 292 49.3
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.9e-55 219.5 290 48.6
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 5.1e-55 219.2 292 48.3
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.2e-53 213.8 290 47.6
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.2e-53 213.8 290 47.6
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.7e-53 213.0 279 46.2
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 2.9e-50 203.4 285 43.5
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 3.8e-50 203.0 286 46.9
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 5.5e-49 199.1 269 46.1
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 7.2e-49 198.7 287 44.6
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 4.6e-48 196.1 267 46.4
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 1.0e-47 194.9 287 45.6
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 1.0e-47 194.9 291 46.4
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.3e-47 194.5 286 44.1
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 3.0e-47 193.4 290 44.8
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.5e-46 191.0 285 42.5
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 5.7e-46 189.1 293 44.0
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 5.7e-46 189.1 281 45.2
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.3e-45 188.0 301 41.9
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.7e-45 187.6 290 43.8
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 1.7e-45 187.6 296 42.9
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 1.7e-45 187.6 293 44.7
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 2.2e-45 187.2 296 43.6
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 3.7e-45 186.4 296 44.6
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.1e-44 184.9 290 43.8
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 4.1e-44 183.0 289 43.9
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 9.1e-44 181.8 273 42.5
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 2.6e-43 180.3 293 41.6
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.6e-43 180.3 293 42.0
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 5.9e-43 179.1 285 41.8
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.3e-42 177.9 292 42.8
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.7e-42 177.6 293 41.6
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 3.8e-42 176.4 271 44.6
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 1.4e-41 174.5 232 44.8
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 5.5e-41 172.6 295 42.4
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 9.4e-41 171.8 291 42.6
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 4.7e-40 169.5 269 44.6
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 7.9e-40 168.7 267 41.6
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 7.9e-40 168.7 276 41.3
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 1.0e-39 168.3 282 43.3
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.8e-39 167.5 281 41.6
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 5.1e-39 166.0 285 42.1
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 6.7e-39 165.6 290 43.1
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.5e-38 164.5 283 43.1
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 4.4e-38 162.9 291 40.9
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 4.8e-37 159.5 290 42.1
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 1.4e-36 157.9 296 41.6
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.1e-36 156.8 270 43.7
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 6.9e-36 155.6 268 40.7
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 2.0e-35 154.1 250 44.0
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 8.5e-34 148.7 292 42.1
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 2.5e-33 147.1 278 39.6
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 5.5e-33 146.0 298 40.9
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.2e-32 144.8 281 38.8
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 1.6e-32 144.4 270 40.0
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 8.0e-32 142.1 273 38.5
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.3e-31 140.6 287 40.1
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 3.9e-31 139.8 283 37.5
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 1.1e-30 138.3 274 39.4
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 2.6e-30 137.1 268 40.7
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 4.4e-30 136.3 266 41.4
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.4e-28 131.3 281 37.7
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.8e-28 131.0 245 39.6
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.4e-28 130.6 278 35.3
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.7e-26 124.4 278 36.0
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 2.1e-24 117.5 189 42.3
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.7e-24 117.1 249 40.2
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 4.7e-24 116.3 285 33.3
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 4.7e-24 116.3 181 42.0
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 4.7e-24 116.3 261 36.8
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 5.2e-23 112.8 224 42.0
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 8.8e-23 112.1 219 41.6
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 8.8e-23 112.1 240 36.2
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 2.6e-22 110.5 207 41.1
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 4.4e-22 109.8 260 33.5
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.7e-21 107.8 287 35.2
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 1.7e-21 107.8 200 42.0
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 2.8e-21 107.1 190 41.6
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 4.8e-21 106.3 218 40.4
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 4.8e-21 106.3 290 33.8
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 4.8e-21 106.3 281 33.1
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 8.2e-21 105.5 94 60.6
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.4e-20 104.8 283 30.7
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 2.4e-20 104.0 283 34.6
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 3.1e-20 103.6 276 33.0
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 5.3e-20 102.8 277 32.1
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.2e-19 101.7 280 32.9
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.6e-19 101.3 275 31.6
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.6e-19 101.3 268 35.4
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 7.7e-19 99.0 250 34.4
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 1.7e-18 97.8 103 52.4
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.7e-18 97.8 103 52.4
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.7e-18 97.8 103 52.4
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.7e-18 97.8 103 52.4
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.2e-18 97.4 103 52.4
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 2.2e-18 97.4 267 31.1
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 5.0e-18 96.3 91 58.2
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 6.5e-18 95.9 265 32.5
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 3.2e-17 93.6 185 37.8
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 3.2e-17 93.6 279 33.3
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.2e-17 93.6 292 31.2
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 5.5e-17 92.8 267 33.7
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 5.5e-17 92.8 265 33.2
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.6e-16 91.3 257 36.2
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 4.7e-16 89.7 205 37.6
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 4.7e-16 89.7 288 32.3
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 6.1e-16 89.4 271 34.7
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 2.3e-15 87.4 297 29.0
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.0e-15 87.0 238 33.6
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 6.8e-15 85.9 78 61.5
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 1.5e-14 84.7 102 48.0
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 2.0e-14 84.3 210 34.3
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 3.4e-14 83.6 206 33.5
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 3.4e-14 83.6 187 36.4
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 4.4e-14 83.2 140 40.7
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 5.7e-14 82.8 266 32.0
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 9.8e-14 82.0 188 35.1
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.3e-13 81.6 258 30.2
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.8e-13 79.7 254 29.5
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 6.3e-13 79.3 271 30.3
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 6.3e-13 79.3 261 30.3
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 9.1e-12 75.5 280 29.6
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 9.1e-12 75.5 92 44.6
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.2e-11 75.1 69 63.8
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.2e-11 75.1 245 33.5
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.6e-11 74.7 266 28.6
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 2.0e-11 74.3 69 62.3
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.0e-11 74.3 76 51.3
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.0e-11 74.3 76 50.0
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.7e-11 73.9 247 32.8
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 5.9e-11 72.8 216 31.5
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 7.7e-11 72.4 133 37.6
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 7.7e-11 72.4 238 30.3
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.3e-10 71.6 234 32.9
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 2.3e-10 70.9 283 29.3
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.9e-10 70.5 92 39.1
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.8e-10 70.1 288 27.4
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 1.1e-09 68.6 66 62.1
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 1.5e-09 68.2 66 53.0
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 1.9e-09 67.8 66 62.1
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 1.9e-09 67.8 209 27.8
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.5e-09 67.4 65 53.8
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 4.2e-09 66.6 145 37.2
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 5.5e-09 66.2 66 60.6
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 5.5e-09 66.2 97 41.2
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 5.5e-09 66.2 243 30.0
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 7.2e-09 65.9 262 28.2
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.6e-08 64.7 87 40.2
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 2.8e-08 63.9 108 35.2
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 6.1e-08 62.8 74 41.9
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 8.0e-08 62.4 242 28.5
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 1.4e-07 61.6 65 52.3
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.4e-07 61.6 108 38.9
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.3e-07 60.8 101 36.6
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 4.0e-07 60.1 268 28.4
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 8.9e-07 58.9 71 42.3
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.5e-06 58.2 176 34.7
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.4e-06 57.0 97 38.1
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 5.7e-06 56.2 197 30.5


User provided reference genes

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