Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 2.1e-103 379.0 190 100.0
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 1.5e-101 372.9 190 98.4
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 6.1e-95 350.9 194 91.2
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 2.0e-93 345.9 190 90.0
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 4.9e-92 341.3 190 88.9
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 6.3e-92 340.9 190 88.4
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 8.3e-92 340.5 190 88.9
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 5.4e-91 337.8 190 88.9
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 9.2e-91 337.0 191 89.5
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 9.2e-91 337.0 190 88.9
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.2e-90 336.7 193 89.1
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.6e-90 336.3 195 89.2
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 2.7e-90 335.5 191 87.4
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.7e-90 335.5 190 88.4
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 4.6e-90 334.7 194 85.6
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 4.6e-90 334.7 193 88.1
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.3e-89 333.2 188 88.3
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 1.3e-89 333.2 193 87.0
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.3e-89 333.2 193 86.5
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.7e-89 332.8 191 86.4
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.7e-89 332.8 190 86.3
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 2.9e-89 332.0 194 87.1
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 2.9e-89 332.0 190 85.8
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 2.9e-89 332.0 194 86.6
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 3.9e-89 331.6 190 84.7
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 3.9e-89 331.6 194 86.6
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 5.0e-89 331.3 193 86.0
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 6.6e-89 330.9 192 87.0
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 6.6e-89 330.9 192 87.5
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 8.6e-89 330.5 190 86.3
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 8.6e-89 330.5 194 86.6
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.9e-88 329.3 189 85.7
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.5e-88 328.9 197 84.3
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 4.3e-88 328.2 190 86.8
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 4.3e-88 328.2 193 85.5
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 5.6e-88 327.8 193 84.5
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 9.5e-88 327.0 198 82.3
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.6e-87 326.2 190 86.3
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 1.6e-87 326.2 194 86.1
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.6e-87 326.2 190 86.3
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 2.8e-87 325.5 192 85.9
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.6e-87 325.1 190 85.8
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 6.1e-87 324.3 192 85.4
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 6.1e-87 324.3 190 85.8
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 6.1e-87 324.3 198 82.3
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 8.0e-87 323.9 193 85.5
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.4e-86 323.2 194 84.5
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.8e-86 322.8 197 83.2
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.3e-86 322.4 213 77.9
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.3e-86 322.4 196 82.7
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 4.0e-86 321.6 193 82.9
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 5.2e-86 321.2 203 79.3
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 6.8e-86 320.9 201 79.1
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.2e-85 320.1 206 79.1
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.2e-85 320.1 196 83.2
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 2.6e-85 318.9 195 81.5
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 2.6e-85 318.9 194 81.4
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 7.5e-85 317.4 197 80.7
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 7.5e-85 317.4 191 82.2
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 9.8e-85 317.0 197 80.7
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 9.8e-85 317.0 202 79.2
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 9.8e-85 317.0 199 79.9
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 9.8e-85 317.0 188 85.6
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.7e-84 316.2 203 77.3
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 2.2e-84 315.8 192 79.7
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.2e-84 315.8 201 78.6
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 2.9e-84 315.5 199 79.4
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 4.9e-84 314.7 199 78.9
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 4.9e-84 314.7 198 81.3
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.1e-83 313.5 194 80.4
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 80.4
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.9e-83 312.8 197 79.7
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 2.4e-83 312.4 200 78.5
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 3.2e-83 312.0 197 79.7
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.2e-83 312.0 200 78.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.2e-83 312.0 200 78.0
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 4.1e-83 311.6 199 78.9
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 4.1e-83 311.6 197 78.2
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 4.1e-83 311.6 193 81.3
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 5.4e-83 311.2 198 77.8
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.4e-83 311.2 194 80.9
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.4e-83 311.2 194 80.9
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 9.2e-83 310.5 195 80.0
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 9.2e-83 310.5 195 80.0
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 9.2e-83 310.5 197 79.2
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 9.2e-83 310.5 199 76.4
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.2e-82 310.1 191 81.7
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 1.2e-82 310.1 194 80.4
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 1.6e-82 309.7 194 77.8
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 1.6e-82 309.7 204 76.0
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 2.0e-82 309.3 197 79.2
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 2.0e-82 309.3 197 79.2
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 4.6e-82 308.1 200 77.0
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 6.0e-82 307.8 197 78.7
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 7.8e-82 307.4 196 80.1
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 7.8e-82 307.4 240 70.0
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.0e-81 307.0 194 79.4
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.7e-81 306.2 201 75.1
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 2.3e-81 305.8 198 78.8
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 8.6e-81 303.9 202 77.7
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.1e-80 303.5 193 80.8
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.5e-80 302.4 206 76.2
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 3.3e-80 302.0 201 76.1
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 4.3e-80 301.6 192 80.2
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 7.3e-80 300.8 194 79.9
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 9.5e-80 300.4 194 79.9
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.6e-79 299.7 196 78.6
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 2.1e-79 299.3 171 84.2
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.1e-79 299.3 174 86.8
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 2.1e-79 299.3 191 80.6
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 2.1e-79 299.3 202 75.2
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.4e-78 296.6 180 83.9
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 2.3e-78 295.8 196 74.5
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.1e-78 295.4 186 80.1
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 3.1e-78 295.4 211 73.0
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 4.4e-77 291.6 198 77.3
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 9.8e-77 290.4 199 73.9
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 2.2e-76 289.3 196 74.0
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 2.2e-76 289.3 201 73.1
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 2.9e-76 288.9 201 73.1
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 8.3e-76 287.3 192 72.4
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 8.3e-76 287.3 211 73.0
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.6e-74 283.1 192 76.0
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 2.7e-74 282.3 180 79.4
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.0e-73 280.4 179 77.7
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.0e-73 280.4 201 73.1
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.3e-73 280.0 204 73.5
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 2.3e-73 279.3 223 65.9
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.5e-72 276.6 196 68.9
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 5.6e-72 274.6 185 74.1
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.6e-72 274.6 175 79.4
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.3e-70 269.2 196 66.8
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 6.8e-70 267.7 179 70.9
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 8.9e-70 267.3 233 64.8
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 2.0e-69 266.2 187 73.8
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 4.1e-67 258.5 182 68.7
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.2e-66 256.9 213 64.3
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 1.7e-65 253.1 177 69.5
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 1.7e-65 253.1 182 70.3
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 9.6e-64 247.3 203 61.1
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.6e-63 246.5 175 73.1
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 6.8e-62 241.1 201 65.2
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 2.6e-61 239.2 190 65.8
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 8.1e-55 217.6 153 72.5
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 3.2e-51 205.7 124 84.7
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.1e-47 193.0 116 82.8
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.4e-46 190.3 173 59.5
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.1e-42 176.4 97 87.6
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 2.1e-42 176.4 100 90.0
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 3.9e-41 172.2 99 89.9
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 1.9e-40 169.9 188 55.9
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 9.6e-40 167.5 113 77.9
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.3e-31 140.6 195 49.7
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.1e-31 139.8 100 74.0
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.7e-31 139.0 83 77.1
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 6.3e-31 138.3 79 83.5
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 9.0e-30 134.4 95 75.8
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.9e-27 126.7 70 90.0
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 6.7e-25 118.2 194 40.2
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 1.5e-24 117.1 186 40.3
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 6.3e-23 111.7 71 83.1
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 6.3e-23 111.7 99 63.6
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 9.0e-22 107.8 188 42.6
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 3.8e-20 102.4 188 41.0
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 5.5e-19 98.6 70 67.1
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 6.1e-18 95.1 63 69.8
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 6.7e-17 91.7 52 76.9
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 6.3e-15 85.1 163 38.7
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 2.6e-13 79.7 62 62.9
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 5.9e-13 78.6 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.0e-12 77.8 53 75.5
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 8.8e-09 64.7 70 54.3
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.4e-06 57.4 57 57.9


User provided reference genes

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