Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 0.0e+00 2100.1 1060 100.0
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 0.0e+00 1864.7 1080 90.3
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 0.0e+00 1456.4 1057 72.7
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 0.0e+00 1171.8 1067 58.6
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 2.1e-269 932.9 1071 49.4
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 6.6e-263 911.4 1001 52.4
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 2.9e-258 896.0 1013 51.8
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 4.6e-256 888.6 1059 49.2
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 9.9e-243 844.3 1053 46.8
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 8.1e-237 824.7 1014 47.8
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 1.6e-232 810.4 1031 46.0
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 6.0e-232 808.5 1150 41.1
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 2.3e-231 806.6 1042 44.7
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 1.9e-230 803.5 1105 46.2
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 5.3e-228 795.4 1037 44.6
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 2.9e-226 789.6 1041 45.6
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 3.8e-226 789.3 1042 44.2
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 4.9e-226 788.9 996 47.3
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 9.3e-225 784.6 1066 42.3
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 1.5e-214 750.7 1003 42.9
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 7.4e-214 748.4 1194 41.0
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 2.8e-213 746.5 1152 41.9
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 6.2e-213 745.3 1198 40.7
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 4.5e-211 739.2 1108 40.8
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 9.3e-209 731.5 884 48.4
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.6e-208 730.7 1210 40.6
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 7.4e-206 721.8 1082 43.1
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 9.6e-206 721.5 1113 42.0
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 2.0e-203 713.8 1182 39.6
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 1.3e-202 711.1 999 42.1
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 1.1e-201 708.0 998 44.3
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 1.4e-201 707.6 1029 41.4
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 7.1e-201 705.3 1263 37.2
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 7.1e-201 705.3 1015 43.8
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 9.3e-201 704.9 1029 42.0
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 2.7e-200 703.4 1002 41.9
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 6.1e-200 702.2 1117 40.0
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 1.3e-199 701.0 1042 42.3
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 1.8e-199 700.7 995 42.1
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 2.3e-199 700.3 1027 40.5
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 4.3e-198 696.0 1003 42.4
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 7.4e-198 695.3 1002 41.1
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 7.4e-198 695.3 1002 41.1
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 9.7e-198 694.9 1295 36.5
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 1.6e-197 694.1 1008 41.9
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 2.8e-197 693.3 999 40.8
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 1.1e-196 691.4 992 41.4
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 1.1e-196 691.4 1096 40.7
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 1.8e-196 690.6 992 41.2
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.8e-196 690.6 1127 38.6
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 9.0e-196 688.3 999 41.6
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 2.0e-195 687.2 994 41.9
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 2.0e-195 687.2 1060 40.6
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 2.0e-195 687.2 997 41.0
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 2.6e-195 686.8 1024 40.4
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 5.9e-195 685.6 1061 41.3
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.3e-194 684.5 1139 37.8
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 2.9e-194 683.3 1115 38.3
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 8.5e-194 681.8 1142 37.9
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 8.5e-194 681.8 995 41.2
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 6.7e-191 672.2 746 48.9
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 1.1e-190 671.4 1035 40.2
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 6.3e-189 665.6 1151 37.1
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 3.1e-188 663.3 1240 38.1
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 1.5e-187 661.0 1173 37.3
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 2.6e-187 660.2 1057 40.0
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 5.0e-186 656.0 1044 39.8
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 1.1e-185 654.8 1086 38.7
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 3.2e-185 653.3 1059 40.6
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 2.7e-184 650.2 1095 38.4
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 2.7e-184 650.2 1095 38.4
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.1e-182 644.8 1201 38.6
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 1.5e-182 644.4 1109 38.1
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 9.7e-182 641.7 870 44.4
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 1.8e-180 637.5 750 49.6
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 4.1e-180 636.3 1163 36.5
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 7.0e-180 635.6 1206 38.2
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 7.0e-180 635.6 994 41.4
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 2.0e-179 634.0 1050 40.3
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 2.2e-178 630.6 1121 38.5
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 8.5e-178 628.6 1002 41.1
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.1e-177 628.2 1207 35.7
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 9.4e-177 625.2 1066 38.3
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 3.6e-176 623.2 998 39.2
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 6.1e-176 622.5 1269 37.1
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 4.0e-175 619.8 542 57.7
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.5e-174 617.8 1115 36.1
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 4.8e-173 612.8 1077 39.6
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 6.5e-170 602.4 1339 32.6
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 1.6e-168 597.8 1059 38.5
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 2.1e-168 597.4 1049 37.6
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.7e-168 597.0 1236 34.5
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 2.7e-168 597.0 1023 38.1
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 2.0e-166 590.9 1236 36.2
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.3e-165 588.2 1229 35.1
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.9e-162 577.0 655 48.5
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 1.8e-159 567.8 1003 38.8
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 1.7e-157 561.2 802 44.0
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 2.8e-152 543.9 844 44.2
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.2e-147 528.5 980 35.6
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 2.0e-147 527.7 687 44.1
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 5.6e-145 519.6 477 54.3
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 1.2e-134 485.3 998 35.8
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.7e-130 471.5 1037 31.4
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.3e-125 455.3 993 33.2
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 1.3e-125 455.3 547 43.9
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 1.4e-119 435.3 775 35.7
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 4.4e-118 430.3 435 57.7
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 3.2e-116 424.1 321 59.8
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 5.4e-116 423.3 313 63.6
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.6e-115 421.8 317 62.1
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 4.6e-115 420.2 812 34.1
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 5.1e-106 390.2 292 65.1
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 1.1e-100 372.5 763 33.9
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 6.0e-99 366.7 772 32.8
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 1.0e-98 365.9 770 33.2
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 4.3e-97 360.5 216 80.1
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.9e-66 257.7 206 61.7
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 6.7e-66 256.9 705 30.6
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 3.3e-65 254.6 297 47.8
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 3.5e-62 244.6 302 46.0
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.3e-56 226.1 338 43.5
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 5.2e-50 204.1 659 27.8
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.5e-49 202.6 365 33.2
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.5e-49 202.6 297 41.8
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 7.5e-49 200.3 133 69.2
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.5e-44 185.3 484 30.6
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.6e-43 182.6 212 47.6
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 1.0e-42 179.9 508 33.9
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 7.5e-41 173.7 244 42.2
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 6.3e-40 170.6 118 68.6
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 1.0e-37 163.3 101 72.3
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.7e-37 162.5 213 44.1
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.3e-37 162.2 408 30.9
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 2.9e-37 161.8 389 31.6
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 1.0e-34 153.3 209 44.5
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 2.3e-34 152.1 332 34.6
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 7.8e-30 137.1 86 70.9
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 4.9e-24 117.9 192 40.6
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.9e-23 115.9 546 28.8
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 3.2e-23 115.2 186 34.9
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 8.6e-21 107.1 397 24.4
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 3.6e-19 101.7 156 41.7
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 5.8e-17 94.4 186 34.4
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 2.3e-13 82.4 190 31.1
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 4.0e-10 71.6 51 58.8
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 5.2e-10 71.2 91 40.7
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 2.2e-08 65.9 45 64.4
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 2.9e-08 65.5 33 84.8


User provided reference genes

Program Settings