Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17190 Vaccinium macrocarpon HOM05D001293 ORTHO05D001143 3.0e-38 161.4 82 100.0
vmacro13298 Vaccinium macrocarpon HOM05D001293 ORTHO05D001143 9.3e-16 86.7 49 85.7
vmacro22735 Vaccinium macrocarpon HOM05D001293 ORTHO05D001143 8.7e-14 80.1 49 79.6
Rhsim07G0017400 Rhododendron simsii HOM05D001293 ORTHO05D001143 1.9e-13 79.0 59 69.5
MSTRG.17254 Avicennia marina HOM05D001293 ORTHO05D001143 2.4e-11 72.0 63 55.6
CAN.G78.46 Capsicum annuum HOM05D001293 ORTHO05D001143 3.4e-10 68.2 53 64.2
GSVIVG01026869001 Vitis vinifera HOM05D001293 ORTHO05D001143 1.0e-09 66.6 49 67.3
Dinv32460 Davidia involucrata HOM05D001293 ORTHO05D001143 1.3e-09 66.2 47 72.3
Solyc10g017540.4 Solanum lycopersicum HOM05D001293 ORTHO05D001143 1.7e-09 65.9 59 59.3
Psat4g202240 Pisum sativum HOM05D001293 ORTHO05D001143 5.0e-09 64.3 49 65.3
Potri.001G107000 Populus trichocarpa HOM05D001293 ORTHO05D001143 8.4e-09 63.5 59 50.8
CiPaw.01G058300 Carya illinoinensis HOM05D001293 ORTHO05D001143 1.1e-08 63.2 49 65.3
Nitab4.5_0000386g0140 Nicotiana tabacum HOM05D001293 ORTHO05D001143 1.1e-08 63.2 46 69.6
CSS0011612 Camellia sinensis var. sinensis HOM05D001293 ORTHO05D001143 1.4e-08 62.8 49 65.3
CSS0022017 Camellia sinensis var. sinensis HOM05D001293 ORTHO05D001143 1.4e-08 62.8 49 65.3
Peaxi162Scf00191g01313 Petunia axillaris HOM05D001293 ORTHO05D001143 1.9e-08 62.4 49 65.3
PGSC0003DMG400010267 Solanum tuberosum HOM05D001293 ORTHO05D001143 1.9e-08 62.4 55 60.0
CANSAT56G1483 Cannabis sativa HOM05D001293 ORTHO05D001143 2.5e-08 62.0 48 64.6
Lsat_1_v5_gn_7_5021 Lactuca sativa HOM05D001293 ORTHO05D001143 3.2e-08 61.6 49 63.3
Sopen10g006350 Solanum pennellii HOM05D001293 ORTHO05D001143 3.2e-08 61.6 55 60.0
MD07G1140300 Malus domestica HOM05D001293 ORTHO05D001143 4.2e-08 61.2 49 63.3
Lj9A581G69 Lonicera japonica HOM05D001293 ORTHO05D001143 5.5e-08 60.8 47 66.0
QL08p049449 Quercus lobata HOM05D001293 ORTHO05D001143 5.5e-08 60.8 51 60.8
DCAR_006917 Daucus carota HOM05D001293 ORTHO05D001143 7.1e-08 60.5 47 63.8
Prupe.2G164400 Prunus persica HOM05D001293 ORTHO05D001143 7.1e-08 60.5 49 61.2
SGA_v2.0_scaffold277G46667 Striga asiatica HOM05D001293 ORTHO05D001143 7.1e-08 60.5 49 67.3
Gohir.A11G087200 Gossypium hirsutum HOM05D001293 ORTHO05D001143 9.3e-08 60.1 47 63.8
Gohir.D11G091600 Gossypium hirsutum HOM05D001293 ORTHO05D001143 9.3e-08 60.1 47 63.8
Nitab4.5_0011760g0010 Nicotiana tabacum HOM05D001293 ORTHO05D001143 9.3e-08 60.1 48 62.5
arahy.Tifrunner.gnm1.ann1.G2NW0H Arachis hypogaea HOM05D001293 ORTHO05D001143 1.2e-07 59.7 64 48.4
EL10Ac5g12774 Beta vulgaris HOM05D001293 ORTHO05D001143 1.2e-07 59.7 51 54.9
Ca_07895_v3 Cicer arietinum L. HOM05D001293 ORTHO05D001143 1.2e-07 59.7 49 61.2
Oeu053287.2 Olea europaea HOM05D001293 ORTHO05D001143 1.2e-07 59.7 49 61.2
Os02g0642200 Oryza sativa ssp. japonica HOM05D001293 ORTHO05D001143 1.6e-07 59.3 52 53.8
TWI23G0114 Tripterygium wilfordii HOM05D001293 ORTHO05D001143 1.6e-07 59.3 49 61.2
Actinidia10035 Actinidia chinensis HOM05D001293 ORTHO05D001143 2.1e-07 58.9 49 61.2
Gohir.A12G226800 Gossypium hirsutum HOM05D001293 ORTHO05D001143 2.1e-07 58.9 64 43.8
Gohir.D12G229200 Gossypium hirsutum HOM05D001293 ORTHO05D001143 2.1e-07 58.9 64 43.8
Gorai.008G118300 Gossypium raimondii HOM05D001293 ORTHO05D001143 2.1e-07 58.9 47 59.6
Gorai.008G245400 Gossypium raimondii HOM05D001293 ORTHO05D001143 2.1e-07 58.9 64 43.8
VMungo1383G2978 Vigna mungo HOM05D001293 ORTHO05D001143 2.1e-07 58.9 49 61.2
Ah.12g057250 Amaranthus hybridus HOM05D001293 ORTHO05D001143 2.7e-07 58.5 56 50.0
Gohir.A12G105300 Gossypium hirsutum HOM05D001293 ORTHO05D001143 2.7e-07 58.5 47 59.6
Potri.014G081300 Populus trichocarpa HOM05D001293 ORTHO05D001143 2.7e-07 58.5 47 63.8
SalBow3G2842 Salvia bowleyana HOM05D001293 ORTHO05D001143 2.7e-07 58.5 50 58.0
Gohir.D12G109200 Gossypium hirsutum HOM05D001293 ORTHO05D001143 3.5e-07 58.2 47 59.6
MBI18_g09034_MAGBIO Magnolia biondii HOM05D001293 ORTHO05D001143 3.5e-07 58.2 64 48.4
Peaxi162Scf00008g01926 Petunia axillaris HOM05D001293 ORTHO05D001143 3.5e-07 58.2 45 64.4
Potri.003G124400 Populus trichocarpa HOM05D001293 ORTHO05D001143 3.5e-07 58.2 58 48.3
Sabra02G0125400 Salix brachista HOM05D001293 ORTHO05D001143 3.5e-07 58.2 47 61.7
Solyc01g094370.3 Solanum lycopersicum HOM05D001293 ORTHO05D001143 3.5e-07 58.2 46 60.9
PGSC0003DMG400000157 Solanum tuberosum HOM05D001293 ORTHO05D001143 3.5e-07 58.2 46 60.9
Eucgr.E00174 Eucalyptus grandis HOM05D001293 ORTHO05D001143 4.6e-07 57.8 46 63.0
Hma1.2p1_0001F.1_g001530 Hydrangea macrophylla HOM05D001293 ORTHO05D001143 4.6e-07 57.8 48 62.5
Peaxi162Scf00056g00025 Petunia axillaris HOM05D001293 ORTHO05D001143 4.6e-07 57.8 46 63.0
Potri.002G157700 Populus trichocarpa HOM05D001293 ORTHO05D001143 4.6e-07 57.8 47 59.6
C04p71870 Brassica napus HOM05D001293 ORTHO05D001143 6.1e-07 57.4 45 62.2
BolC4t28685H Brassica oleracea HOM05D001293 ORTHO05D001143 6.1e-07 57.4 45 62.2
AUR62021196 Chenopodium quinoa HOM05D001293 ORTHO05D001143 6.1e-07 57.4 50 56.0
Gorai.007G097700 Gossypium raimondii HOM05D001293 ORTHO05D001143 6.1e-07 57.4 46 60.9
AT5G23750 Arabidopsis thaliana HOM05D001293 ORTHO05D001143 7.9e-07 57.0 51 52.9
Carub.0006s2150 Capsella rubella HOM05D001293 ORTHO05D001143 7.9e-07 57.0 51 52.9
Lj8A25T66 Lonicera japonica HOM05D001293 ORTHO05D001143 7.9e-07 57.0 67 43.3
MD01G1055000 Malus domestica HOM05D001293 ORTHO05D001143 7.9e-07 57.0 47 61.7
Nitab4.5_0002160g0100 Nicotiana tabacum HOM05D001293 ORTHO05D001143 7.9e-07 57.0 42 69.0
Sabra01G0081100 Salix brachista HOM05D001293 ORTHO05D001143 7.9e-07 57.0 61 49.2
Sp4g27890 Schrenkiella parvula HOM05D001293 ORTHO05D001143 7.9e-07 57.0 45 60.0
arahy.Tifrunner.gnm1.ann1.FT21TK Arachis hypogaea HOM05D001293 ORTHO05D001143 1.0e-06 56.6 64 46.9
MSTRG.13834 Avicennia marina HOM05D001293 ORTHO05D001143 1.0e-06 56.6 50 58.0
Cfa008315 Carpinus fangiana HOM05D001293 ORTHO05D001143 1.0e-06 56.6 63 42.9
Duzib133G0349 Durio zibethinus HOM05D001293 ORTHO05D001143 1.0e-06 56.6 46 63.0
TPR.G4394 Trifolium pratense HOM05D001293 ORTHO05D001143 1.0e-06 56.6 48 58.3
AL6G35030 Arabidopsis lyrata HOM05D001293 ORTHO05D001143 1.3e-06 56.2 51 52.9
CARHR141090 Cardamine hirsuta HOM05D001293 ORTHO05D001143 1.3e-06 56.2 44 61.4
CiPaw.01G058400 Carya illinoinensis HOM05D001293 ORTHO05D001143 1.3e-06 56.2 46 58.7
Eucgr.E00569 Eucalyptus grandis HOM05D001293 ORTHO05D001143 1.3e-06 56.2 64 45.3
FAN01G2629 Fragaria x ananassa HOM05D001293 ORTHO05D001143 1.3e-06 56.2 48 56.2
FAN06G3765 Fragaria x ananassa HOM05D001293 ORTHO05D001143 1.3e-06 56.2 48 56.2
FAN06G5082 Fragaria x ananassa HOM05D001293 ORTHO05D001143 1.3e-06 56.2 48 56.2
Sabra03G0088000 Salix brachista HOM05D001293 ORTHO05D001143 1.3e-06 56.2 61 47.5
Sopen01g038160 Solanum pennellii HOM05D001293 ORTHO05D001143 1.3e-06 56.2 45 60.0
BcaC02g07061 Brassica carinata HOM05D001293 ORTHO05D001143 1.8e-06 55.8 45 60.0
Ca_23655_v3 Cicer arietinum L. HOM05D001293 ORTHO05D001143 1.8e-06 55.8 49 59.2
Lj1g0011057 Lotus japonicus HOM05D001293 ORTHO05D001143 1.8e-06 55.8 48 58.3
Solyc05g048820.3 Solanum lycopersicum HOM05D001293 ORTHO05D001143 1.8e-06 55.8 49 53.1
Sopen05g028150 Solanum pennellii HOM05D001293 ORTHO05D001143 1.8e-06 55.8 49 53.1
COL.COLO4_12682 Corchorus olitorius HOM05D001293 ORTHO05D001143 3.0e-06 55.1 43 65.1
Psat3g110560 Pisum sativum HOM05D001293 ORTHO05D001143 3.0e-06 55.1 51 60.8
Atru.chr5.476 Acer truncatum HOM05D001293 ORTHO05D001143 3.9e-06 54.7 48 58.3
FAN03G1371 Fragaria x ananassa HOM05D001293 ORTHO05D001143 3.9e-06 54.7 48 54.2
FAN10G1499 Fragaria x ananassa HOM05D001293 ORTHO05D001143 3.9e-06 54.7 48 54.2
Glyma.18G230500 Glycine max HOM05D001293 ORTHO05D001143 3.9e-06 54.7 43 65.1
Sabra11G0044600 Salix brachista HOM05D001293 ORTHO05D001143 3.9e-06 54.7 47 57.4
TPR.G37804 Trifolium pratense HOM05D001293 ORTHO05D001143 3.9e-06 54.7 63 54.0
unitig_22.g5358 Utricularia gibba HOM05D001293 ORTHO05D001143 3.9e-06 54.7 54 57.4
CsaV3_3G009010 Cucumis sativus L. HOM05D001293 ORTHO05D001143 5.1e-06 54.3 51 56.9
Duzib138G1208 Durio zibethinus HOM05D001293 ORTHO05D001143 5.1e-06 54.3 43 62.8
Manes.05G036950 Manihot esculenta HOM05D001293 ORTHO05D001143 5.1e-06 54.3 41 65.9
Os04g0533300 Oryza sativa ssp. japonica HOM05D001293 ORTHO05D001143 5.1e-06 54.3 48 58.3
Sed0012916 Sechium edule HOM05D001293 ORTHO05D001143 5.1e-06 54.3 55 50.9
A05p05800 Brassica napus HOM05D001293 ORTHO05D001143 6.7e-06 53.9 45 62.2
Haze_08887 Corylus avellana HOM05D001293 ORTHO05D001143 6.7e-06 53.9 55 52.7
Haze_08890 Corylus avellana HOM05D001293 ORTHO05D001143 6.7e-06 53.9 55 52.7
Thhalv10001646m.g Eutrema salsugineum HOM05D001293 ORTHO05D001143 6.7e-06 53.9 41 63.4
A04p34070 Brassica napus HOM05D001293 ORTHO05D001143 8.7e-06 53.5 41 63.4
BraA04t18868Z Brassica rapa HOM05D001293 ORTHO05D001143 8.7e-06 53.5 41 63.4
Sabra14G0059200 Salix brachista HOM05D001293 ORTHO05D001143 8.7e-06 53.5 72 50.0
Thecc.01G362600 Theobroma cacao HOM05D001293 ORTHO05D001143 8.7e-06 53.5 43 60.5
VMungo0331G0001 Vigna mungo HOM05D001293 ORTHO05D001143 8.7e-06 53.5 45 60.0


User provided reference genes

Program Settings