Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 3.4e-97 358.6 221 100.0
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.2e-67 259.6 222 79.3
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.7e-51 205.7 232 59.5
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.9e-48 196.1 220 60.0
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 3.8e-48 195.7 196 64.8
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 2.7e-41 172.9 217 64.5
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 3.5e-41 172.6 216 63.0
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 1.4e-37 160.6 213 58.2
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 5.7e-36 155.2 196 61.7
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.8e-34 150.2 217 49.8
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 7.0e-34 148.3 218 50.0
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 2.7e-33 146.4 218 48.6
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 3.9e-32 142.5 279 40.5
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 6.6e-32 141.7 218 47.7
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 8.6e-32 141.4 226 44.7
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 1.9e-31 140.2 216 55.1
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 5.6e-31 138.7 208 50.5
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.2e-30 137.5 212 48.6
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.2e-30 137.5 212 47.2
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.0e-30 134.8 212 47.2
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.8e-29 133.7 212 45.3
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 5.8e-28 128.6 121 70.2
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.3e-27 127.5 181 59.7
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 5.4e-26 122.1 180 51.1
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 1.2e-25 120.9 201 47.8
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.6e-25 120.6 216 44.0
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 1.0e-24 117.9 206 45.6
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.0e-24 116.3 155 54.2
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 3.9e-24 115.9 206 39.8
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 6.6e-24 115.2 191 44.0
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 6.6e-24 115.2 183 47.0
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.5e-23 114.0 264 47.0
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 3.3e-23 112.8 181 48.1
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 4.3e-23 112.5 205 45.4
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 1.2e-22 110.9 181 46.4
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 8.1e-22 108.2 113 68.1
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.8e-21 107.1 180 40.6
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 1.8e-21 107.1 191 44.5
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.8e-21 107.1 191 44.5
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 5.2e-21 105.5 204 36.3
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 5.8e-20 102.1 120 60.8
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 8.3e-19 98.2 253 32.4
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 1.1e-18 97.8 122 62.3
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 1.4e-18 97.4 299 39.8
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 2.4e-18 96.7 113 64.6
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.2e-18 96.3 88 75.0
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 3.2e-18 96.3 110 60.0
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 5.4e-18 95.5 92 73.9
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 5.4e-18 95.5 183 44.3
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 1.6e-17 94.0 181 53.0
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 2.1e-17 93.6 184 44.6
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.7e-17 93.2 109 60.6
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 3.5e-17 92.8 121 41.3
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 4.6e-17 92.4 122 58.2
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 1.3e-16 90.9 124 57.3
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 3.0e-16 89.7 90 73.3
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 3.9e-16 89.4 183 38.8
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 5.1e-16 89.0 159 37.1
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 6.6e-16 88.6 90 71.1
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 1.1e-15 87.8 160 43.1
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 1.1e-15 87.8 98 67.3
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 2.5e-15 86.7 112 59.8
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 2.5e-15 86.7 179 43.0
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 4.3e-15 85.9 182 40.1
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 5.6e-15 85.5 81 74.1
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 5.6e-15 85.5 177 34.5
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 5.6e-15 85.5 215 45.6
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 7.3e-15 85.1 77 76.6
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 7.3e-15 85.1 227 30.0
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 9.5e-15 84.7 85 69.4
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.2e-14 84.3 98 67.3
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.2e-14 84.3 101 63.4
AL8G32890 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 2.8e-14 83.2 215 35.8
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 4.7e-14 82.4 161 34.8
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 4.7e-14 82.4 161 34.8
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 4.7e-14 82.4 215 44.7
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 4.7e-14 82.4 76 73.7
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 6.2e-14 82.0 73 78.1
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 8.1e-14 81.6 88 71.6
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.1e-13 81.3 76 76.3
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 1.1e-13 81.3 215 30.7
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.8e-13 80.5 80 70.0
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 1.8e-13 80.5 177 38.4
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 1.8e-13 80.5 215 43.7
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 2.3e-13 80.1 163 35.0
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 2.3e-13 80.1 92 63.0
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 3.1e-13 79.7 80 70.0
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.1e-13 79.7 73 76.7
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 4.0e-13 79.3 165 34.5
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 4.0e-13 79.3 161 33.5
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.0e-13 79.3 99 65.7
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 4.0e-13 79.3 90 65.6
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 4.0e-13 79.3 76 73.7
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 5.2e-13 79.0 90 65.6
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 5.2e-13 79.0 76 72.4
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 6.8e-13 78.6 98 63.3
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 8.9e-13 78.2 161 42.9
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 8.9e-13 78.2 84 65.5
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 1.2e-12 77.8 163 41.7
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 1.2e-12 77.8 184 30.4
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 1.2e-12 77.8 76 73.7
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 2.0e-12 77.0 82 67.1
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 2.0e-12 77.0 82 67.1
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.0e-12 77.0 93 66.7
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.6e-12 76.6 90 66.7
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 3.4e-12 76.3 90 42.2
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 3.4e-12 76.3 56 73.2
AT5G57000 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 4.4e-12 75.9 156 43.6
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 5.8e-12 75.5 87 65.5
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 5.8e-12 75.5 84 67.9
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 5.8e-12 75.5 82 68.3
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 7.6e-12 75.1 90 66.7
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 7.6e-12 75.1 203 29.6
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 9.9e-12 74.7 78 70.5
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 9.9e-12 74.7 90 63.3
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 9.9e-12 74.7 76 69.7
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 9.9e-12 74.7 82 68.3
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 1.3e-11 74.3 90 65.6
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.7e-11 73.9 57 61.4
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.2e-11 73.6 172 30.8
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 3.8e-11 72.8 174 31.6
BcaC01g06458 Brassica carinata HOM05D003238 ORTHO05D003571 4.9e-11 72.4 161 40.4
BcaNung05246 Brassica carinata HOM05D003238 ORTHO05D003571 4.9e-11 72.4 161 40.4
C03p15230 Brassica napus HOM05D003238 ORTHO05D003571 4.9e-11 72.4 161 40.4
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 4.9e-11 72.4 83 61.4
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 4.9e-11 72.4 94 59.6
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 6.4e-11 72.0 157 44.6
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 1.1e-10 71.2 190 31.6
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 1.1e-10 71.2 89 62.9
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 1.4e-10 70.9 53 62.3
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 1.4e-10 70.9 53 62.3
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 1.9e-10 70.5 76 71.1
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 1.9e-10 70.5 188 30.9
Carub.0008s1748 Capsella rubella HOM05D003238 ORTHO05D003571 2.4e-10 70.1 165 41.2
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 3.2e-10 69.7 52 57.7
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 5.4e-10 68.9 100 42.0
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 7.1e-10 68.6 84 63.1
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 7.1e-10 68.6 62 50.0
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 9.2e-10 68.2 159 30.2
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 9.2e-10 68.2 234 25.6
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 9.2e-10 68.2 90 63.3
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 1.2e-09 67.8 99 57.6
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 1.6e-09 67.4 234 25.6
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 1.6e-09 67.4 234 25.6
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 1.6e-09 67.4 99 58.6
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 2.1e-09 67.0 207 30.0
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 2.7e-09 66.6 79 63.3
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 2.7e-09 66.6 89 59.6
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 2.7e-09 66.6 156 31.4
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 2.7e-09 66.6 88 62.5
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 3.5e-09 66.2 79 64.6
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 6.0e-09 65.5 174 29.9
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 6.0e-09 65.5 236 28.8
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 6.0e-09 65.5 73 72.6
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 6.0e-09 65.5 80 61.2
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 7.8e-09 65.1 49 57.1
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 7.8e-09 65.1 94 46.8
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.0e-08 64.7 233 27.9
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 1.7e-08 63.9 233 35.2
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 2.3e-08 63.5 48 58.3
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 2.3e-08 63.5 82 61.0
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 2.3e-08 63.5 183 36.1
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 3.9e-08 62.8 49 63.3
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 3.9e-08 62.8 62 58.1
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 5.1e-08 62.4 49 61.2
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 6.6e-08 62.0 75 48.0
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 1.5e-07 60.8 80 41.2
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 1.9e-07 60.5 135 33.3
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 1.9e-07 60.5 135 33.3
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 2.5e-07 60.1 63 47.6
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 4.3e-07 59.3 179 27.9
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 4.3e-07 59.3 73 43.8
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 7.3e-07 58.5 65 46.2
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 9.6e-07 58.2 232 27.6
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 2.1e-06 57.0 88 38.6
Lsat_1_v5_gn_5_142981 Lactuca sativa HOM05D003238 ORTHO05D003571 4.7e-06 55.8 95 38.9
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 6.2e-06 55.5 79 40.5


User provided reference genes

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