Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17111 Vaccinium macrocarpon HOM05D044336 ORTHO05D426834 3.7e-174 614.8 307 100.0
vmacro15981 Vaccinium macrocarpon HOM05D044336 ORTHO05D427102 1.3e-14 84.7 46 82.6
vmacro20202 Vaccinium macrocarpon HOM05D000371 ORTHO05D006177 1.0e-11 75.1 109 45.0
Rhsim05G0200700 Rhododendron simsii HOM05D000371 ORTHO05D006177 2.2e-09 67.4 54 66.7
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 4.9e-09 66.2 57 73.7
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 6.4e-09 65.9 55 70.9
TAR623G0600 Trochodendron aralioides HOM05D000371 ORTHO05D006177 1.1e-08 65.1 56 55.4
Actinidia13813 Actinidia chinensis HOM05D000371 ORTHO05D006177 2.4e-08 63.9 61 57.4
Cpa.g.sc56.67 Carica papaya HOM05D000371 ORTHO05D006177 2.4e-08 63.9 94 44.7
MBI14_g02853_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D006177 3.2e-08 63.5 61 57.4
Dinv35537 Davidia involucrata HOM05D000371 ORTHO05D006177 4.1e-08 63.2 61 55.7
Hma1.2p1_0671F.1_g200670 Hydrangea macrophylla HOM05D000371 ORTHO05D006177 4.1e-08 63.2 61 54.1
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 5.4e-08 62.8 59 62.7
Aqoxy1G00785 Aquilegia oxysepala HOM05D000371 ORTHO05D006177 7.0e-08 62.4 57 50.9
FvH4_6g12640 Fragaria vesca HOM05D000371 ORTHO05D006177 7.0e-08 62.4 61 54.1
FAN05G2038 Fragaria x ananassa HOM05D000371 ORTHO05D006177 7.0e-08 62.4 61 54.1
FAN09G2403 Fragaria x ananassa HOM05D000371 ORTHO05D006177 7.0e-08 62.4 61 54.1
FAN14G4066 Fragaria x ananassa HOM05D000371 ORTHO05D006177 7.0e-08 62.4 61 54.1
Lj3C959T17 Lonicera japonica HOM05D000371 ORTHO05D006177 7.0e-08 62.4 61 55.7
CSS0030871 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D006177 9.2e-08 62.0 61 54.1
CSS0040865 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D006177 9.2e-08 62.0 61 54.1
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 1.2e-07 61.6 59 62.7
Nitab4.5_0001650g0040 Nicotiana tabacum HOM05D000371 ORTHO05D006177 1.2e-07 61.6 69 46.4
Nitab4.5_0006562g0050 Nicotiana tabacum HOM05D000371 ORTHO05D006177 1.2e-07 61.6 69 46.4
RcHm_v2.0_Chr3g0464491 Rosa chinensis HOM05D000371 ORTHO05D006177 1.2e-07 61.6 61 54.1
Cfa017293 Carpinus fangiana HOM05D000371 ORTHO05D006177 1.6e-07 61.2 61 54.1
Haze_20900 Corylus avellana HOM05D000371 ORTHO05D006177 1.6e-07 61.2 61 54.1
TAR369G0679 Trochodendron aralioides HOM05D000371 ORTHO05D006177 2.7e-07 60.5 56 50.0
Medtr4g055500 Medicago truncatula HOM05D000371 ORTHO05D006177 3.5e-07 60.1 55 49.1
Psat7g241000 Pisum sativum HOM05D000371 ORTHO05D006177 6.0e-07 59.3 60 50.0
TPR.G17889 Trifolium pratense HOM05D000371 ORTHO05D006177 6.0e-07 59.3 60 50.0
TWI74G1022 Tripterygium wilfordii HOM05D000371 ORTHO05D006177 6.0e-07 59.3 73 46.6
Prupe.6G265400 Prunus persica HOM05D000371 ORTHO05D006177 7.8e-07 58.9 61 52.5
Ca_03543_v3 Cicer arietinum L. HOM05D000371 ORTHO05D006177 1.0e-06 58.5 60 48.3
Duzib093G0786 Durio zibethinus HOM05D000371 ORTHO05D006177 1.0e-06 58.5 56 50.0
Lsat_1_v5_gn_8_80801 Lactuca sativa HOM05D000371 ORTHO05D006177 1.0e-06 58.5 61 52.5
SGA_v2.0_scaffold273G46441 Striga asiatica HOM05D000371 ORTHO05D006177 1.0e-06 58.5 43 58.1
DCAR_028802 Daucus carota HOM05D000371 ORTHO05D006177 1.3e-06 58.2 56 51.8
QL02p027403 Quercus lobata HOM05D000371 ORTHO05D006177 1.3e-06 58.2 61 47.5
GSVIVG01034052001 Vitis vinifera HOM05D000371 ORTHO05D006177 1.3e-06 58.2 44 52.3
arahy.Tifrunner.gnm1.ann1.23E1K9 Arachis hypogaea HOM05D000371 ORTHO05D006177 2.3e-06 57.4 61 50.8
arahy.Tifrunner.gnm1.ann1.YWW12F Arachis hypogaea HOM05D000371 ORTHO05D006177 2.3e-06 57.4 61 50.8
MD12G1155600 Malus domestica HOM05D000371 ORTHO05D006177 2.3e-06 57.4 44 59.1
Oeu030546.3 Olea europaea HOM05D000371 ORTHO05D006177 2.3e-06 57.4 56 48.2
Ciclev10011305m.g Citrus clementina HOM05D000371 ORTHO05D006177 3.0e-06 57.0 58 48.3
ECA236G3449 Erigeron canadensis HOM05D000371 ORTHO05D006177 3.0e-06 57.0 61 50.8
LjContig00047_ERROPOS266959g0016401 Lotus japonicus HOM05D000371 ORTHO05D006177 3.0e-06 57.0 61 52.5
Gohir.A09G161700 Gossypium hirsutum HOM05D000371 ORTHO05D006177 3.9e-06 56.6 61 49.2
HanXRQChr06g0176681 Helianthus annuus HOM05D000371 ORTHO05D006177 3.9e-06 56.6 61 50.8
MD04G1140300 Malus domestica HOM05D000371 ORTHO05D006177 3.9e-06 56.6 37 64.9
Glyma.01G106600 Glycine max HOM05D000371 ORTHO05D006177 5.0e-06 56.2 76 43.4
Manes.15G172300 Manihot esculenta HOM05D000371 ORTHO05D006177 5.0e-06 56.2 56 48.2
Peaxi162Scf00562g00024 Petunia axillaris HOM05D000371 ORTHO05D006177 5.0e-06 56.2 74 45.9
Potri.016G105100 Populus trichocarpa HOM05D000371 ORTHO05D006177 5.0e-06 56.2 55 50.9
vmacro12721 Vaccinium macrocarpon HOM05D008336 ORTHO05D011520 5.0e-06 56.2 51 51.0
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 5.0e-06 56.2 58 60.3
BcaC08g44659 Brassica carinata HOM05D000371 ORTHO05D006177 6.6e-06 55.8 61 50.8
C06p21810 Brassica napus HOM05D000371 ORTHO05D006177 6.6e-06 55.8 61 50.8
BolC6t37369H Brassica oleracea HOM05D000371 ORTHO05D006177 6.6e-06 55.8 61 50.8
Gohir.D09G157300 Gossypium hirsutum HOM05D000371 ORTHO05D006177 6.6e-06 55.8 61 47.5
Gorai.006G178900 Gossypium raimondii HOM05D000371 ORTHO05D006177 6.6e-06 55.8 61 47.5
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 6.6e-06 55.8 70 51.4
CANSAT01G2772 Cannabis sativa HOM05D000371 ORTHO05D006177 8.6e-06 55.5 44 56.8
CARHR163910 Cardamine hirsuta HOM05D000371 ORTHO05D006177 8.6e-06 55.5 61 50.8
Sp5g08380 Schrenkiella parvula HOM05D000371 ORTHO05D006177 8.6e-06 55.5 65 49.2


User provided reference genes

Program Settings