Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 8.5e-45 183.3 95 100.0
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 8.5e-21 103.6 75 76.0
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 3.1e-15 85.1 50 82.0
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 2.7e-14 82.0 50 80.0
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 7.7e-14 80.5 56 71.4
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 7.7e-14 80.5 50 78.0
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 7.7e-14 80.5 50 78.0
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 1.3e-13 79.7 50 76.0
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 1.7e-13 79.3 50 78.0
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 1.7e-13 79.3 50 80.0
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 2.3e-13 79.0 50 74.0
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 2.3e-13 79.0 51 74.5
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 2.9e-13 78.6 50 70.0
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 2.9e-13 78.6 50 74.0
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 3.8e-13 78.2 50 70.0
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 3.8e-13 78.2 50 74.0
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 3.8e-13 78.2 51 72.5
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 3.8e-13 78.2 51 76.5
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 6.5e-13 77.4 50 74.0
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 6.5e-13 77.4 50 74.0
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 6.5e-13 77.4 50 74.0
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 6.5e-13 77.4 51 74.5
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 6.5e-13 77.4 51 74.5
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 6.5e-13 77.4 51 72.5
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 6.5e-13 77.4 51 72.5
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 6.5e-13 77.4 51 72.5
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 8.6e-13 77.0 53 67.9
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 8.6e-13 77.0 50 74.0
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 8.6e-13 77.0 50 74.0
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 1.5e-12 76.3 51 70.6
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 1.5e-12 76.3 51 72.5
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.9e-12 75.9 50 72.0
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 2.5e-12 75.5 53 67.9
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 2.5e-12 75.5 53 67.9
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 3.2e-12 75.1 51 72.5
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 3.2e-12 75.1 49 71.4
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 4.2e-12 74.7 51 68.6
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 5.5e-12 74.3 51 70.6
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 7.2e-12 73.9 49 67.3
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 9.5e-12 73.6 51 66.7
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 1.2e-11 73.2 50 72.0
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 1.2e-11 73.2 50 70.0
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 1.6e-11 72.8 51 66.7
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 1.6e-11 72.8 48 68.8
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 2.1e-11 72.4 51 68.6
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 2.1e-11 72.4 53 64.2
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.1e-11 72.4 50 70.0
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 2.1e-11 72.4 50 70.0
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 2.1e-11 72.4 50 70.0
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 2.8e-11 72.0 49 71.4
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 2.8e-11 72.0 50 70.0
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 2.8e-11 72.0 50 68.0
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 2.8e-11 72.0 51 66.7
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 3.6e-11 71.6 50 68.0
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 3.6e-11 71.6 50 68.0
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 4.7e-11 71.2 50 66.0
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 6.1e-11 70.9 47 72.3
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 6.1e-11 70.9 51 66.7
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 6.1e-11 70.9 58 65.5
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 1.0e-10 70.1 50 68.0
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 1.0e-10 70.1 50 64.0
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 1.0e-10 70.1 50 66.0
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 1.0e-10 70.1 50 64.0
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 1.4e-10 69.7 50 66.0
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 1.8e-10 69.3 47 72.3
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 1.8e-10 69.3 54 64.8
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 1.8e-10 69.3 49 67.3
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 2.3e-10 68.9 47 72.3
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 2.3e-10 68.9 47 72.3
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 2.3e-10 68.9 47 72.3
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 4.0e-10 68.2 47 70.2
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 4.0e-10 68.2 50 64.0
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 6.8e-10 67.4 50 64.0
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 6.8e-10 67.4 50 64.0
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 8.8e-10 67.0 50 66.0
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 8.8e-10 67.0 50 64.0
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 8.8e-10 67.0 50 66.0
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 8.8e-10 67.0 50 64.0
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 8.8e-10 67.0 56 66.1
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.2e-09 66.6 48 66.7
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 1.2e-09 66.6 48 66.7
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 1.2e-09 66.6 50 64.0
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 1.5e-09 66.2 50 64.0
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 2.6e-09 65.5 47 70.2
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 3.4e-09 65.1 50 62.0
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 4.4e-09 64.7 50 62.0
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 5.7e-09 64.3 50 58.0
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 9.8e-09 63.5 50 60.0
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 9.8e-09 63.5 50 62.0
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 9.8e-09 63.5 50 62.0
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 1.3e-08 63.2 50 60.0
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 1.3e-08 63.2 50 60.0
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 1.3e-08 63.2 51 58.8
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 2.2e-08 62.4 42 73.8
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 2.2e-08 62.4 50 58.0
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 2.8e-08 62.0 51 56.9
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 6.3e-08 60.8 50 58.0
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 1.1e-07 60.1 42 73.8
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 5.4e-07 57.8 51 54.9
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 5.4e-07 57.8 51 54.9
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 1.6e-06 56.2 51 52.9
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 1.6e-06 56.2 51 52.9
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 1.6e-06 56.2 51 52.9
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 2.0e-06 55.8 46 58.7
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 2.7e-06 55.5 50 52.0


User provided reference genes

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