Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16964 Vaccinium macrocarpon HOM05D006672 ORTHO05D007769 9.2e-88 327.0 185 100.0
Rhsim12G0199700 Rhododendron simsii HOM05D006672 ORTHO05D007769 7.2e-48 194.5 187 63.1
Dinv30493 Davidia involucrata HOM05D006672 ORTHO05D007769 2.1e-39 166.4 180 56.1
Actinidia24746 Actinidia chinensis HOM05D006672 ORTHO05D007769 1.0e-33 147.5 188 48.4
Cc04_g03140 Coffea canephora HOM05D006672 ORTHO05D007769 2.2e-33 146.4 194 48.5
Actinidia08988 Actinidia chinensis HOM05D000726 ORTHO05D007769 3.6e-31 139.0 156 55.8
FvH4_6g31600 Fragaria vesca HOM05D006672 ORTHO05D007769 1.4e-30 137.1 181 52.5
Migut.D01021 Erythranthe guttata HOM05D006672 ORTHO05D007769 4.4e-29 132.1 192 45.8
FAN09G1670 Fragaria x ananassa HOM05D006672 ORTHO05D007769 9.7e-29 131.0 179 52.0
Oeu040367.1 Olea europaea HOM05D006672 ORTHO05D007769 6.3e-28 128.3 191 45.0
EL10Ac9g22019 Beta vulgaris HOM05D000202 ORTHO05D000117 8.2e-28 127.9 177 47.5
CiPaw.02G149600 Carya illinoinensis HOM05D006672 ORTHO05D007769 1.4e-27 127.1 178 45.5
Haze_12408 Corylus avellana HOM05D006672 ORTHO05D007769 3.1e-27 125.9 165 47.9
FAN14G5379 Fragaria x ananassa HOM05D006672 ORTHO05D007769 5.3e-27 125.2 172 49.4
TAR636G2852 Trochodendron aralioides HOM05D006672 ORTHO05D007769 9.1e-27 124.4 187 45.5
Cfa009362 Carpinus fangiana HOM05D006672 ORTHO05D007769 4.5e-26 122.1 164 47.6
FAN05G5736 Fragaria x ananassa HOM05D006672 ORTHO05D007769 1.3e-25 120.6 181 51.4
ECA234G2073 Erigeron canadensis HOM05D006672 ORTHO05D007769 1.7e-25 120.2 194 45.4
Hma1.2p1_2022F.1_g311340 Hydrangea macrophylla HOM05D006672 ORTHO05D007769 1.7e-25 120.2 186 46.2
SalBow1G8254 Salvia bowleyana HOM05D000380 ORTHO05D000561 2.2e-25 119.8 191 47.6
DCAR_022631 Daucus carota HOM05D006672 ORTHO05D007769 2.9e-25 119.4 180 47.8
Lsat_1_v5_gn_2_34400 Lactuca sativa HOM05D008424 ORTHO05D007769 3.8e-25 119.0 178 44.9
QL05p022164 Quercus lobata HOM05D006672 ORTHO05D007769 3.8e-25 119.0 189 47.6
Sopen03g039560 Solanum pennellii HOM05D006672 ORTHO05D007769 6.5e-25 118.2 188 46.3
Potri.003G053500 Populus trichocarpa HOM05D006672 ORTHO05D007769 8.5e-25 117.9 200 46.0
Solyc03g120740.1 Solanum lycopersicum HOM05D006672 ORTHO05D007769 1.1e-24 117.5 188 46.3
Glyma.08G205200 Glycine max HOM05D006672 ORTHO05D007769 1.9e-24 116.7 185 44.9
Nitab4.5_0001315g0240 Nicotiana tabacum HOM05D006672 ORTHO05D007769 1.9e-24 116.7 187 44.4
HanXRQChr10g0313401 Helianthus annuus HOM05D006672 ORTHO05D007769 2.5e-24 116.3 195 44.1
AUR62011637 Chenopodium quinoa HOM05D006672 ORTHO05D007769 4.2e-24 115.5 149 51.0
SGA_v2.0_scaffold4G02004 Striga asiatica HOM05D006672 ORTHO05D007769 4.2e-24 115.5 191 45.0
Manes.04G128475 Manihot esculenta HOM05D006672 ORTHO05D007769 2.1e-23 113.2 206 41.3
Nn8g39154 Nelumbo nucifera HOM05D006672 ORTHO05D007769 3.6e-23 112.5 194 42.3
Lsat_1_v5_gn_5_130661 Lactuca sativa HOM05D006672 ORTHO05D007769 6.1e-23 111.7 170 47.1
DCAR_026329 Daucus carota HOM05D006672 ORTHO05D007769 1.0e-22 110.9 168 44.6
Aqoxy7G01641 Aquilegia oxysepala HOM05D006672 ORTHO05D007769 1.4e-22 110.5 181 45.9
THA.LOC104800426 Tarenaya hassleriana HOM05D006672 ORTHO05D007769 1.4e-22 110.5 192 44.3
MSTRG.22671 Avicennia marina HOM05D006672 ORTHO05D007769 1.8e-22 110.2 193 39.9
AUR62016468 Chenopodium quinoa HOM05D006672 ORTHO05D007769 3.0e-22 109.4 147 51.0
RcHm_v2.0_Chr2g0138661 Rosa chinensis HOM05D006672 ORTHO05D007769 4.0e-22 109.0 179 49.2
Nitab4.5_0008314g0010 Nicotiana tabacum HOM05D006672 ORTHO05D007769 5.2e-22 108.6 160 42.5
MBI04_g22016_MAGBIO Magnolia biondii HOM05D006672 ORTHO05D007769 6.7e-22 108.2 189 45.0
TWI12G1441 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 1.2e-21 107.5 194 41.2
Phvul.010G149100 Phaseolus vulgaris HOM05D006672 ORTHO05D007769 4.4e-21 105.5 187 40.1
Prupe.3G068600 Prunus persica HOM05D006672 ORTHO05D007769 9.7e-21 104.4 174 45.4
Lj3g0012066 Lotus japonicus HOM05D006672 ORTHO05D007769 1.3e-20 104.0 185 43.8
COL.COLO4_30405 Corchorus olitorius HOM05D006672 ORTHO05D007769 2.2e-20 103.2 192 42.2
TWI75G0771 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 4.8e-20 102.1 199 40.2
Ah.01g021520 Amaranthus hybridus HOM05D006672 ORTHO05D007769 6.3e-20 101.7 187 39.0
PSO782G0352 Papaver somniferum HOM05D006672 ORTHO05D007769 6.3e-20 101.7 187 39.6
unitig_899.g14774 Utricularia gibba HOM05D006672 ORTHO05D007769 1.1e-19 100.9 181 40.9
Ciclev10026595m.g Citrus clementina HOM05D006672 ORTHO05D007769 1.8e-19 100.1 195 43.1
Atru.chr1.3318 Acer truncatum HOM05D006672 ORTHO05D007769 4.1e-19 99.0 168 47.6
Lsat_1_v5_gn_5_130760 Lactuca sativa HOM05D006672 ORTHO05D007769 5.3e-19 98.6 138 49.3
PGSC0003DMG400040414 Solanum tuberosum HOM05D006672 ORTHO05D007769 1.2e-18 97.4 188 41.0
Sabra03G0029900 Salix brachista HOM05D006672 ORTHO05D007769 2.0e-18 96.7 148 46.6
Thecc.06G091100 Theobroma cacao HOM05D006672 ORTHO05D007769 3.5e-18 95.9 192 41.7
CANSAT56G0062 Cannabis sativa HOM05D006672 ORTHO05D007769 4.5e-18 95.5 186 39.8
Gohir.D05G130600 Gossypium hirsutum HOM05D006672 ORTHO05D007769 5.9e-18 95.1 199 41.2
Gorai.009G134300 Gossypium raimondii HOM05D006672 ORTHO05D007769 5.9e-18 95.1 199 41.2
Gohir.A05G131200 Gossypium hirsutum HOM05D006672 ORTHO05D007769 7.7e-18 94.7 199 40.7
MD17G1192500 Malus domestica HOM05D006672 ORTHO05D007769 7.7e-18 94.7 186 42.5
PSO832G0654 Papaver somniferum HOM05D006672 ORTHO05D007769 1.0e-17 94.4 187 36.4
VMungo0331G0342 Vigna mungo HOM05D006672 ORTHO05D007769 2.2e-17 93.2 187 40.6
AT1G15230 Arabidopsis thaliana HOM05D006672 ORTHO05D007769 2.5e-16 89.7 190 40.5
ClCG07G013120 Citrullus lanatus HOM05D006672 ORTHO05D007769 4.2e-16 89.0 179 39.1
AL1G27320 Arabidopsis lyrata HOM05D006672 ORTHO05D007769 1.2e-15 87.4 190 39.5
CSS0000508 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 1.6e-15 87.0 175 42.3
Carub.0001s1499 Capsella rubella HOM05D006672 ORTHO05D007769 2.7e-15 86.3 188 40.4
BraA06t24303Z Brassica rapa HOM05D006672 ORTHO05D007769 6.1e-15 85.1 189 38.6
TPR.G17666 Trifolium pratense HOM05D006672 ORTHO05D007769 8.0e-15 84.7 185 37.8
MELO3C012968.2 Cucumis melo HOM05D006672 ORTHO05D007769 1.8e-14 83.6 174 39.1
arahy.Tifrunner.gnm1.ann1.07RGV5 Arachis hypogaea HOM05D006672 ORTHO05D007769 3.0e-14 82.8 189 39.7
Ca_20375_v3 Cicer arietinum L. HOM05D006672 ORTHO05D007769 3.0e-14 82.8 180 36.1
arahy.Tifrunner.gnm1.ann1.HW7XL7 Arachis hypogaea HOM05D006672 ORTHO05D007769 4.0e-14 82.4 140 43.6
CARHR015760 Cardamine hirsuta HOM05D006672 ORTHO05D007769 5.2e-14 82.0 196 38.3
Duzib160G0370 Durio zibethinus HOM05D000726 ORTHO05D007769 1.5e-13 80.5 164 39.0
Sp1g13550 Schrenkiella parvula HOM05D006672 ORTHO05D007769 1.5e-13 80.5 194 38.7
Thhalv10008936m.g Eutrema salsugineum HOM05D006672 ORTHO05D007769 3.4e-13 79.3 198 38.9
A06p11230 Brassica napus HOM05D006672 ORTHO05D007769 4.4e-13 79.0 188 38.3
Sc15g0001280 Simmondsia chinensis HOM05D006672 ORTHO05D007769 4.4e-13 79.0 189 37.6
BolC5t30073H Brassica oleracea HOM05D006672 ORTHO05D007769 1.3e-12 77.4 190 36.3
Lalb_Chr25g0279941 Lupinus albus HOM05D006672 ORTHO05D007769 2.2e-12 76.6 160 38.1
arahy.Tifrunner.gnm1.ann1.N61AC9 Arachis hypogaea HOM05D006672 ORTHO05D007769 3.7e-12 75.9 146 41.1
arahy.Tifrunner.gnm1.ann1.ZTP7X5 Arachis hypogaea HOM05D006672 ORTHO05D007769 4.8e-12 75.5 138 40.6
arahy.Tifrunner.gnm1.ann1.MVJ1PZ Arachis hypogaea HOM05D006672 ORTHO05D007769 8.3e-12 74.7 181 38.7
Duzib235G0275 Durio zibethinus HOM05D006672 ORTHO05D007769 8.3e-12 74.7 82 52.4
arahy.Tifrunner.gnm1.ann1.HQ5KA8 Arachis hypogaea HOM05D006672 ORTHO05D007769 1.1e-11 74.3 108 44.4
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 1.4e-11 73.9 157 39.5
Psat7g250280 Pisum sativum HOM05D006672 ORTHO05D007769 1.4e-11 73.9 185 34.6
BcaC05g25452 Brassica carinata HOM05D006672 ORTHO05D007769 1.8e-11 73.6 190 36.3
C05p13360 Brassica napus HOM05D006672 ORTHO05D007769 1.8e-11 73.6 190 36.3
Peaxi162Scf00015g00013 Petunia axillaris HOM05D006672 ORTHO05D007769 4.1e-11 72.4 108 43.5
BcaC05g25462 Brassica carinata HOM05D006672 ORTHO05D007769 9.1e-11 71.2 134 41.0
CSS0037944 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 9.1e-11 71.2 174 37.9
arahy.Tifrunner.gnm1.ann1.K72DJ3 Arachis hypogaea HOM05D006672 ORTHO05D007769 2.0e-10 70.1 79 51.9
Medtr0206s0010 Medicago truncatula HOM05D006672 ORTHO05D007769 2.7e-10 69.7 104 47.1
BcaC05g25464 Brassica carinata HOM05D006672 ORTHO05D007769 3.5e-10 69.3 188 36.2
Rhsim06G0080600 Rhododendron simsii HOM05D006672 ORTHO05D007769 4.5e-10 68.9 80 50.0
PGR102G2442 Punica granatum HOM05D006672 ORTHO05D007769 7.7e-10 68.2 175 34.9
Aa31LG7G40 Aethionema arabicum HOM05D006672 ORTHO05D007769 1.3e-09 67.4 173 38.7
arahy.Tifrunner.gnm1.ann1.C7681Z Arachis hypogaea HOM05D006672 ORTHO05D007769 2.9e-09 66.2 145 40.0
arahy.Tifrunner.gnm1.ann1.QF27IC Arachis hypogaea HOM05D006672 ORTHO05D007769 1.1e-08 64.3 147 39.5
CsaV3_3G025030 Cucumis sativus L. HOM05D006672 ORTHO05D007769 1.1e-08 64.3 169 35.5
Medtr4g012950 Medicago truncatula HOM05D006672 ORTHO05D007769 1.1e-08 64.3 106 44.3
Sed0005168 Sechium edule HOM05D006672 ORTHO05D007769 1.1e-08 64.3 185 35.1
PGR102G0682 Punica granatum HOM05D006672 ORTHO05D007769 1.9e-08 63.5 59 59.3
Lsat_1_v5_gn_4_162060 Lactuca sativa HOM05D006672 ORTHO05D007769 6.1e-07 58.5 57 59.6
Lsat_1_v5_gn_5_130640 Lactuca sativa HOM05D006672 ORTHO05D007769 6.1e-07 58.5 49 67.3
Os09g0344700 Oryza sativa ssp. japonica HOM05D006672 ORTHO05D007769 1.0e-06 57.8 92 62.0
Zm00001eb098380 Zea mays HOM05D006672 ORTHO05D007769 1.8e-06 57.0 37 78.4
SEGI_22972 Sequoiadendron giganteum HOM05D006672 ORTHO05D007769 4.0e-06 55.8 178 31.5
SGA_v2.0_scaffold5G02564 Striga asiatica HOM05D000085 ORTHO05D000274 4.0e-06 55.8 47 61.7
Nitab4.5_0002600g0060 Nicotiana tabacum HOM05D006672 ORTHO05D007769 8.8e-06 54.7 101 36.6
HPP92_005483 Vanilla planifolia HOM05D006672 ORTHO05D007769 8.8e-06 54.7 44 63.6


User provided reference genes

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