Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16961 Vaccinium macrocarpon HOM05D009663 ORTHO05D007789 1.2e-242 842.8 448 100.0
Rhsim12G0199400 Rhododendron simsii HOM05D009663 ORTHO05D007789 5.9e-64 249.2 331 48.6
Rhsim12G0199500 Rhododendron simsii HOM05D000727 ORTHO05D000541 3.6e-61 240.0 342 48.8
Rhsim12G0082000 Rhododendron simsii HOM05D009663 ORTHO05D007789 2.2e-18 97.8 137 41.6
Rhsim12G0082100 Rhododendron simsii HOM05D009663 ORTHO05D007789 9.3e-17 92.4 140 39.3
Rhsim13G0014700 Rhododendron simsii HOM05D009663 ORTHO05D007789 1.0e-15 89.0 139 39.6
Rhsim07G0120300 Rhododendron simsii HOM05D009663 ORTHO05D007789 5.1e-15 86.7 133 39.1
Rhsim13G0019200 Rhododendron simsii HOM05D009663 ORTHO05D007789 1.1e-12 79.0 130 38.5
Rhsim10G0206900 Rhododendron simsii HOM05D009663 ORTHO05D007789 1.4e-12 78.6 133 38.3
Rhsim06G0038400 Rhododendron simsii HOM05D038451 ORTHO05D007789 1.8e-12 78.2 148 35.8
vmacro05103 Vaccinium macrocarpon HOM05D009663 ORTHO05D007789 3.1e-12 77.4 127 38.6
Hma1.2p1_0785F.1_g217500 Hydrangea macrophylla HOM05D008623 ORTHO05D007789 5.3e-12 76.6 126 37.3
Rhsim06G0044600 Rhododendron simsii HOM05D009663 ORTHO05D007789 6.9e-12 76.3 159 38.4
Rhsim06G0038100 Rhododendron simsii HOM05D038451 ORTHO05D007789 9.0e-12 75.9 142 37.3
Rhsim10G0207200 Rhododendron simsii HOM05D009663 ORTHO05D007789 9.0e-12 75.9 144 38.2
Rhsim09G0029000 Rhododendron simsii HOM05D009663 ORTHO05D007789 2.0e-11 74.7 134 38.8
vmacro14314 Vaccinium macrocarpon HOM05D009663 ORTHO05D007789 5.8e-11 73.2 144 37.5
Rhsim10G0165100 Rhododendron simsii HOM05D009663 ORTHO05D007789 9.9e-11 72.4 127 39.4
Dinv41634 Davidia involucrata HOM05D008623 ORTHO05D007789 1.3e-10 72.0 116 35.3
CSS0009631 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 2.2e-10 71.2 122 36.1
AL2G12230 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 3.8e-10 70.5 148 29.7
CSS0006926 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 4.9e-10 70.1 121 35.5
Rhsim06G0172100 Rhododendron simsii HOM05D000032 ORTHO05D009914 4.9e-10 70.1 129 34.9
PGR083G2548 Punica granatum HOM05D008623 ORTHO05D007789 6.4e-10 69.7 132 35.6
AL2G12220 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.1e-09 68.9 148 29.7
Rhsim08G0153800 Rhododendron simsii HOM05D042119 ORTHO05D007789 1.1e-09 68.9 132 35.6
Lj1A798T45 Lonicera japonica HOM05D011954 ORTHO05D014236 2.4e-09 67.8 130 33.8
PGR083G2854 Punica granatum HOM05D008623 ORTHO05D007789 4.2e-09 67.0 133 34.6
Dinv01175 Davidia involucrata HOM05D008623 ORTHO05D007789 5.4e-09 66.6 116 34.5
Rhsim04G0228600 Rhododendron simsii HOM05D009663 ORTHO05D011812 9.3e-09 65.9 127 35.4
Rhsim06G0038200 Rhododendron simsii HOM05D038451 ORTHO05D007789 1.2e-08 65.5 132 34.8
CSS0039646 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 1.6e-08 65.1 137 34.3
Lj1A773T40 Lonicera japonica HOM05D011954 ORTHO05D014236 2.1e-08 64.7 121 37.2
Rhsim12G0034900 Rhododendron simsii HOM05D042119 ORTHO05D007789 2.7e-08 64.3 149 38.9
Dinv41569 Davidia involucrata HOM05D008623 ORTHO05D007789 3.5e-08 63.9 119 34.5
Lj1A786G23 Lonicera japonica HOM05D011954 ORTHO05D014236 4.6e-08 63.5 132 34.8
PGR142G3708 Punica granatum HOM05D008623 ORTHO05D007789 4.6e-08 63.5 129 36.4
Actinidia14014 Actinidia chinensis HOM05D008623 ORTHO05D010647 6.0e-08 63.2 111 37.8
CSS0001720 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 6.0e-08 63.2 137 33.6
CSS0008827 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 6.0e-08 63.2 108 37.0
CSS0021925 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 6.0e-08 63.2 108 37.0
Lj1A778T39 Lonicera japonica HOM05D011954 ORTHO05D014236 7.9e-08 62.8 121 36.4
Actinidia04665 Actinidia chinensis HOM05D008623 ORTHO05D010647 1.8e-07 61.6 116 36.2
AL2G12260 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 3.0e-07 60.8 132 31.1
CSS0006348 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 3.0e-07 60.8 111 33.3
CSS0013123 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 3.0e-07 60.8 108 35.2
CSS0032446 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 3.0e-07 60.8 108 35.2
arahy.Tifrunner.gnm1.ann1.U7E3JB Arachis hypogaea HOM05D010841 ORTHO05D007789 5.1e-07 60.1 100 37.0
BcaB01g04427 Brassica carinata HOM05D007210 ORTHO05D006152 5.1e-07 60.1 137 34.3
Dinv04048 Davidia involucrata HOM05D000041 ORTHO05D019419 5.1e-07 60.1 116 36.2
Nitab4.5_0000613g0220 Nicotiana tabacum HOM05D010354 ORTHO05D012840 1.1e-06 58.9 146 30.8
Rhsim04G0228800 Rhododendron simsii HOM05D009663 ORTHO05D011812 1.1e-06 58.9 154 31.2
vmacro11249 Vaccinium macrocarpon HOM05D009663 ORTHO05D007789 1.1e-06 58.9 160 30.0
Lj1A773T41 Lonicera japonica HOM05D011954 ORTHO05D014236 1.5e-06 58.5 106 38.7
PGR119G0037 Punica granatum HOM05D041654 ORTHO05D336761 1.5e-06 58.5 122 32.8
vmacro13892 Vaccinium macrocarpon HOM05D000906 ORTHO05D000713 1.5e-06 58.5 126 33.3
PGSC0003DMG402028118 Solanum tuberosum HOM05D001907 ORTHO05D015557 1.9e-06 58.2 121 32.2
Aqoxy5G01012 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 2.5e-06 57.8 50 52.0
BcaC01g06452 Brassica carinata HOM05D007210 ORTHO05D006152 2.5e-06 57.8 127 34.6
Duzib187G0243 Durio zibethinus HOM05D016489 ORTHO05D007789 2.5e-06 57.8 113 33.6
Thhalv10023855m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 2.5e-06 57.8 151 31.1
MBI05_g09436_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 2.5e-06 57.8 54 50.0
Nn6g31707 Nelumbo nucifera HOM05D000727 ORTHO05D000541 2.5e-06 57.8 78 37.2
PGR119G0864 Punica granatum HOM05D041654 ORTHO05D336932 2.5e-06 57.8 122 32.8
TAR381G0891 Trochodendron aralioides HOM05D000727 ORTHO05D000541 2.5e-06 57.8 79 36.7
Peaxi162Scf00122g02315 Petunia axillaris HOM05D000727 ORTHO05D000541 3.3e-06 57.4 69 40.6
AL4G33850 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.3e-06 57.0 142 28.9
BcaB07g31384 Brassica carinata HOM05D007210 ORTHO05D006152 4.3e-06 57.0 116 35.3
DCAR_007960 Daucus carota HOM05D014660 ORTHO05D016977 4.3e-06 57.0 131 32.8
Duzib147G1147 Durio zibethinus HOM05D000727 ORTHO05D000541 4.3e-06 57.0 51 51.0
ClCG10G000260 Citrullus lanatus HOM05D000727 ORTHO05D000541 5.6e-06 56.6 80 41.2
Eucgr.F03571 Eucalyptus grandis HOM05D000727 ORTHO05D000541 5.6e-06 56.6 56 46.4
Os09g0551600 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 5.6e-06 56.6 54 51.9
CAN.G762.6 Capsicum annuum HOM05D008623 ORTHO05D007789 7.4e-06 56.2 170 27.6
Cc07_g11830 Coffea canephora HOM05D000727 ORTHO05D000541 7.4e-06 56.2 50 50.0
DCAR_027027 Daucus carota HOM05D014660 ORTHO05D016977 7.4e-06 56.2 114 37.7
Migut.L00772 Erythranthe guttata HOM05D000727 ORTHO05D000541 7.4e-06 56.2 99 35.4
Lj1A777T20 Lonicera japonica HOM05D011954 ORTHO05D014236 7.4e-06 56.2 175 29.1
CAN.G354.15 Capsicum annuum HOM05D000727 ORTHO05D000541 9.6e-06 55.8 66 43.9
CiPaw.02G191800 Carya illinoinensis HOM05D000727 ORTHO05D000541 9.6e-06 55.8 55 45.5
Nn5g30987 Nelumbo nucifera HOM05D000727 ORTHO05D000541 9.6e-06 55.8 50 50.0
Nitab4.5_0005297g0030 Nicotiana tabacum HOM05D000727 ORTHO05D000541 9.6e-06 55.8 109 31.2
QL10p030388 Quercus lobata HOM05D019990 ORTHO05D007789 9.6e-06 55.8 110 35.5
QL10p030420 Quercus lobata HOM05D019990 ORTHO05D007789 9.6e-06 55.8 110 35.5
GSVIVG01013385001 Vitis vinifera HOM05D000727 ORTHO05D000541 9.6e-06 55.8 59 47.5
Zm00001eb104350 Zea mays HOM05D000727 ORTHO05D000541 9.6e-06 55.8 54 50.0


User provided reference genes

Program Settings