Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 2.0e-174 615.5 290 100.0
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 2.7e-142 508.8 286 84.3
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 7.8e-134 480.7 285 78.9
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.8e-130 469.5 286 79.0
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 6.9e-130 467.6 281 75.8
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 1.2e-129 466.8 280 77.1
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.0e-129 466.1 282 76.2
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.4e-129 464.9 281 76.2
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 3.5e-126 455.3 252 81.7
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 6.0e-126 454.5 271 76.0
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.0e-125 453.8 255 80.0
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 1.7e-125 453.0 281 75.4
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 2.3e-125 452.6 255 80.4
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 5.1e-125 451.4 253 79.8
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 8.7e-125 450.7 270 77.4
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 1.5e-124 449.9 244 82.0
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.3e-124 448.4 279 73.8
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 7.4e-124 447.6 258 80.2
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.6e-123 446.4 257 79.4
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 2.1e-123 446.0 280 75.4
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 2.8e-123 445.7 251 80.1
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 2.8e-123 445.7 237 84.4
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 6.2e-123 444.5 286 71.7
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 1.1e-122 443.7 254 78.0
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.1e-122 443.7 231 84.0
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 6.9e-122 441.0 273 74.7
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.2e-121 440.3 283 71.7
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.5e-121 439.9 258 77.9
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 2.6e-121 439.1 255 77.3
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 5.8e-121 438.0 254 77.2
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 9.9e-121 437.2 285 73.3
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 1.7e-120 436.4 241 80.1
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 2.2e-120 436.0 275 74.5
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 2.9e-120 435.6 266 73.3
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.9e-120 434.9 285 70.9
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 4.9e-120 434.9 271 73.4
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 8.4e-120 434.1 276 71.7
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 1.1e-119 433.7 232 81.9
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.4e-119 433.3 257 76.3
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 1.9e-119 433.0 256 75.4
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 2.4e-119 432.6 258 73.6
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 2.4e-119 432.6 276 72.5
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 3.2e-119 432.2 257 75.9
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 4.2e-119 431.8 257 75.9
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 4.2e-119 431.8 249 77.1
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 5.5e-119 431.4 252 76.6
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 5.5e-119 431.4 257 76.3
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 7.1e-119 431.0 257 75.9
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 7.1e-119 431.0 252 76.6
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 9.3e-119 430.6 252 77.4
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 1.6e-118 429.9 253 75.9
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 1.6e-118 429.9 266 73.3
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 2.7e-118 429.1 244 77.5
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 6.0e-118 427.9 251 76.1
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 7.9e-118 427.6 252 77.8
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 7.9e-118 427.6 251 75.7
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 1.0e-117 427.2 235 80.9
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 1.0e-117 427.2 253 73.9
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 1.3e-117 426.8 254 76.8
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 2.3e-117 426.0 252 75.0
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 2.3e-117 426.0 257 75.9
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 3.0e-117 425.6 251 74.9
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 3.0e-117 425.6 237 77.6
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 5.1e-117 424.9 252 76.2
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 1.1e-116 423.7 243 77.8
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 1.1e-116 423.7 235 78.3
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.9e-116 422.9 255 72.5
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 1.9e-116 422.9 255 72.5
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 1.9e-116 422.9 239 79.1
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 2.5e-116 422.5 252 74.2
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 2.5e-116 422.5 253 75.1
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 3.3e-116 422.2 242 76.9
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 3.3e-116 422.2 245 75.9
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 4.3e-116 421.8 252 74.6
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 4.3e-116 421.8 252 74.2
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 5.6e-116 421.4 265 73.6
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 5.6e-116 421.4 243 74.9
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 7.4e-116 421.0 256 74.6
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 7.4e-116 421.0 253 75.1
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 9.6e-116 420.6 245 75.9
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 1.3e-115 420.2 251 72.5
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 1.6e-115 419.9 251 72.1
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 2.1e-115 419.5 252 72.2
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 2.1e-115 419.5 251 72.5
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 2.1e-115 419.5 240 77.9
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 2.8e-115 419.1 252 71.8
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.7e-115 418.7 244 77.9
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 3.7e-115 418.7 244 77.9
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 4.8e-115 418.3 235 77.4
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 4.8e-115 418.3 243 74.5
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 4.8e-115 418.3 252 73.8
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 6.2e-115 417.9 250 73.6
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 6.2e-115 417.9 241 74.7
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 6.2e-115 417.9 246 74.4
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 8.1e-115 417.5 225 80.9
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 1.1e-114 417.2 257 72.0
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.1e-114 417.2 243 74.9
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 1.4e-114 416.8 243 74.9
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 1.8e-114 416.4 252 73.0
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.8e-114 416.4 244 77.5
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 3.1e-114 415.6 238 73.9
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 3.1e-114 415.6 246 74.4
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.0e-114 415.2 254 72.0
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 5.3e-114 414.8 256 71.1
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 5.3e-114 414.8 249 75.1
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 6.9e-114 414.5 250 74.0
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 9.0e-114 414.1 252 72.6
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.2e-113 413.7 241 73.4
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 1.2e-113 413.7 243 74.9
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.5e-113 413.3 241 73.0
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 2.0e-113 412.9 232 77.2
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 2.6e-113 412.5 243 74.5
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 2.6e-113 412.5 244 73.0
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 2.6e-113 412.5 250 74.8
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 3.4e-113 412.1 242 73.6
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 4.5e-113 411.8 263 70.3
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 4.5e-113 411.8 251 72.5
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 5.8e-113 411.4 251 69.7
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 1.0e-112 410.6 260 70.4
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 1.0e-112 410.6 248 73.8
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 1.3e-112 410.2 252 72.2
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 1.7e-112 409.8 252 71.8
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 2.9e-112 409.1 242 74.0
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 8.4e-112 407.5 242 73.1
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 1.1e-111 407.1 230 74.8
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.9e-111 406.4 230 74.8
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.9e-111 406.4 230 74.8
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 5.5e-111 404.8 235 75.7
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 5.5e-111 404.8 242 74.0
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.6e-110 403.3 244 76.2
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 1.6e-110 403.3 255 71.8
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 2.7e-110 402.5 225 77.3
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 6.0e-110 401.4 242 73.6
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 2.3e-109 399.4 225 74.2
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 6.7e-109 397.9 233 75.1
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.5e-108 396.7 233 73.8
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 4.3e-108 395.2 243 70.4
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 4.3e-108 395.2 234 73.1
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 7.4e-108 394.4 242 72.7
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.4e-106 390.2 254 67.3
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 1.5e-105 386.7 232 72.4
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.0e-104 384.0 265 68.3
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 4.3e-100 368.6 214 77.6
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.1e-98 364.0 238 68.1
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 6.9e-98 361.3 224 69.6
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 1.9e-95 353.2 229 68.1
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 2.5e-95 352.8 236 66.1
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.5e-95 352.8 228 66.7
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 7.2e-95 351.3 240 65.8
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 5.1e-93 345.1 233 65.7
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.5e-87 326.2 270 61.5
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 7.4e-84 314.7 183 78.7
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 1.7e-83 313.5 224 63.8
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 1.4e-82 310.5 157 84.7
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 9.1e-82 307.8 156 85.9
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 1.1e-63 247.7 182 61.0
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 3.6e-54 216.1 231 45.0
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.4e-50 204.1 218 51.4
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 4.1e-50 202.6 225 46.2
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.1e-37 161.4 89 79.8
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 7.3e-31 138.7 107 62.6
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 6.8e-29 132.1 116 56.9
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 6.2e-22 109.0 154 41.6
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 1.3e-16 91.3 51 70.6
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 1.2e-12 78.2 66 60.6


User provided reference genes

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