Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 1.9e-212 742.3 379 100.0
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 7.1e-151 537.7 391 74.4
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 9.6e-140 500.7 384 69.0
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 2.7e-118 429.5 406 57.9
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 3.0e-117 426.0 393 61.1
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 3.3e-116 422.5 401 59.4
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 5.6e-116 421.8 383 61.6
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 3.7e-115 419.1 405 56.8
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 2.4e-114 416.4 414 55.8
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 3.1e-114 416.0 410 56.8
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 2.6e-113 412.9 416 55.5
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 2.6e-113 412.9 425 54.6
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 3.4e-113 412.5 411 58.4
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 4.9e-112 408.7 403 55.8
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 6.5e-112 408.3 416 55.3
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 6.5e-112 408.3 383 59.0
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 8.4e-112 407.9 390 56.7
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 1.1e-111 407.5 387 58.1
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 1.1e-111 407.5 392 58.4
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 1.1e-111 407.5 381 59.1
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 1.4e-111 407.1 395 55.2
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 4.2e-111 405.6 388 57.2
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 1.2e-110 404.1 402 56.7
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 1.2e-110 404.1 388 56.4
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 1.2e-110 404.1 391 56.8
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 4.6e-110 402.1 411 54.3
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 7.9e-110 401.4 398 57.3
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 7.9e-110 401.4 392 56.9
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 7.9e-110 401.4 393 56.2
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 1.3e-109 400.6 406 56.9
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 2.3e-109 399.8 415 54.2
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 6.7e-109 398.3 386 58.0
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 1.1e-108 397.5 404 56.2
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 1.5e-108 397.1 397 55.7
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 2.5e-108 396.4 397 54.2
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 1.6e-107 393.7 391 56.0
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 2.2e-107 393.3 404 55.4
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 6.3e-107 391.7 394 54.8
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 2.4e-106 389.8 410 54.1
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 3.1e-106 389.4 387 55.8
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 4.1e-106 389.0 386 58.3
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 4.1e-106 389.0 385 56.6
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 6.9e-106 388.3 395 55.2
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 6.9e-106 388.3 389 55.8
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 6.9e-106 388.3 394 55.6
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 1.2e-105 387.5 385 55.8
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 1.5e-105 387.1 387 56.6
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 2.0e-105 386.7 388 56.2
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 3.4e-105 386.0 386 56.5
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 4.5e-105 385.6 388 53.9
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 1.0e-104 384.4 386 56.7
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 1.7e-104 383.6 392 54.3
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 9.3e-103 377.9 410 53.2
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 1.2e-102 377.5 386 54.7
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 3.6e-102 375.9 412 51.5
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 6.1e-102 375.2 408 52.7
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 6.7e-101 371.7 391 54.2
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 1.1e-100 370.9 398 53.8
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 1.1e-100 370.9 383 54.6
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 1.8e-98 363.6 384 54.2
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 5.3e-98 362.1 393 53.7
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 6.9e-98 361.7 359 54.9
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 2.6e-97 359.8 381 52.8
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 2.2e-96 356.7 397 49.9
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 1.1e-95 354.4 382 53.1
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 1.4e-95 354.0 376 51.6
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 1.2e-94 350.9 376 51.9
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 1.6e-94 350.5 377 51.2
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 1.6e-94 350.5 377 51.2
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 2.1e-94 350.1 395 50.6
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 2.7e-94 349.7 393 50.6
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 3.6e-94 349.4 377 51.2
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 4.7e-94 349.0 374 51.3
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 4.7e-94 349.0 377 51.2
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 1.0e-93 347.8 374 51.6
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 5.1e-93 345.5 375 51.5
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 5.1e-93 345.5 387 50.9
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 2.0e-92 343.6 391 49.9
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 2.6e-92 343.2 407 48.2
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 1.3e-91 340.9 375 49.9
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 9.1e-90 334.7 380 51.1
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 1.2e-89 334.3 376 49.7
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 7.7e-89 331.6 379 51.2
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 2.2e-88 330.1 382 49.7
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 3.8e-88 329.3 398 47.0
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 2.1e-86 323.6 394 49.5
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 2.1e-86 323.6 394 49.5
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 1.0e-85 321.2 422 45.5
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 1.8e-85 320.5 388 48.5
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 9.7e-84 314.7 387 47.8
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 2.2e-83 313.5 393 46.8
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 2.2e-83 313.5 393 46.8
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 2.2e-83 313.5 393 46.8
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 1.0e-80 304.7 391 45.3
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 2.2e-80 303.5 335 52.2
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 2.9e-80 303.1 387 45.5
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 3.8e-80 302.8 348 48.0
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 1.1e-79 301.2 349 48.1
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 1.5e-79 300.8 389 45.2
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 6.5e-72 275.4 229 64.6
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 1.5e-71 274.2 387 43.4
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 1.5e-68 264.2 327 46.2
Oeu045134.1 Olea europaea HOM05D005464 ORTHO05D006803 5.7e-68 262.3 283 54.4
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 9.8e-68 261.5 389 40.9
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 7.7e-65 251.9 382 38.7
QL05p029765 Quercus lobata HOM05D005464 ORTHO05D006803 9.5e-63 245.0 233 57.5
QL05p030112 Quercus lobata HOM05D005464 ORTHO05D006803 9.5e-63 245.0 233 57.5
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 1.4e-61 241.1 387 38.2
Nn2g12091 Nelumbo nucifera HOM05D000467 ORTHO05D000379 5.2e-61 239.2 237 55.7
Lj9P500T36 Lonicera japonica HOM05D005464 ORTHO05D006803 1.2e-57 228.0 229 54.6
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 1.6e-57 227.6 333 39.0
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 5.9e-57 225.7 299 45.5
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 2.9e-56 223.4 327 41.0
CSS0011845 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 1.2e-54 218.0 130 83.1
CSS0036664 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 3.6e-54 216.5 130 82.3
TAR383G0924 Trochodendron aralioides HOM05D005464 ORTHO05D006803 4.7e-54 216.1 162 71.0
Sc06g0005910 Simmondsia chinensis HOM05D005464 ORTHO05D006803 2.9e-51 206.8 216 50.9
Atru.chr1.2936 Acer truncatum HOM05D005464 ORTHO05D006803 5.6e-47 192.6 229 49.3
Sc06g0005900 Simmondsia chinensis HOM05D005464 ORTHO05D006803 6.2e-46 189.1 134 70.9
AagrBONN_evm.TU.Sc2ySwM_344.2189 Anthoceros agrestis HOM05D005464 ORTHO05D006803 3.2e-42 176.8 229 44.1
HPP92_010901 Vanilla planifolia HOM05D005464 ORTHO05D006803 1.7e-40 171.0 227 41.9
Cc04_g04410 Coffea canephora HOM05D005464 ORTHO05D006803 8.6e-40 168.7 194 51.5
VMungo1127G1748 Vigna mungo HOM05D005464 ORTHO05D006803 2.6e-36 157.1 203 43.8
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 2.9e-35 153.7 237 43.9
AL2G41450 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 3.5e-33 146.7 133 59.4
Psat1g035880 Pisum sativum HOM05D005464 ORTHO05D006803 2.5e-31 140.6 105 69.5
BcaC05g25495 Brassica carinata HOM05D005464 ORTHO05D006803 1.4e-29 134.8 185 41.6
Pp3c13_16980 Physcomitrium patens HOM05D005464 ORTHO05D006803 1.2e-28 131.7 233 34.3
Psat6g000160 Pisum sativum HOM05D005464 ORTHO05D006803 3.4e-28 130.2 136 50.0
AL2G41440 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 1.1e-26 125.2 137 48.9
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 1.2e-25 121.7 369 26.8
QL05p030118 Quercus lobata HOM05D005464 ORTHO05D006803 6.9e-21 105.9 133 50.4
SEGI_27934 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 9.0e-21 105.5 314 28.3
QL05p029759 Quercus lobata HOM05D005464 ORTHO05D006803 1.5e-20 104.8 133 50.4
TAR383G0332 Trochodendron aralioides HOM05D005464 ORTHO05D006803 3.5e-17 93.6 113 46.9
Medtr2g103890 Medicago truncatula HOM05D005464 ORTHO05D006803 4.5e-12 76.6 92 45.7
Nn1g00750 Nelumbo nucifera HOM05D005464 ORTHO05D006803 7.6e-12 75.9 87 51.7
CBR_g38673 Chara braunii HOM05D005464 ORTHO05D006803 1.4e-10 71.6 260 23.8
Psat6g211360 Pisum sativum HOM05D005464 ORTHO05D006803 1.6e-09 68.2 97 47.4
SEGI_39315 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 1.3e-08 65.1 69 44.9
Zm00001eb085680 Zea mays HOM05D001741 ORTHO05D002196 8.7e-08 62.4 368 21.5
Os01g0921500 Oryza sativa ssp. japonica HOM05D001741 ORTHO05D002196 1.1e-07 62.0 361 24.4
CBR_g50398 Chara braunii HOM05D001741 ORTHO05D002196 8.1e-06 55.8 132 31.8
MBI01_g12908_MAGBIO Magnolia biondii HOM05D001741 ORTHO05D002196 8.1e-06 55.8 125 31.2


User provided reference genes

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