Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 5.7e-69 264.2 144 100.0
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 5.0e-49 198.0 142 78.2
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 2.3e-38 162.5 138 66.7
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 6.6e-33 144.4 107 69.2
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 3.6e-31 138.7 149 57.0
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 7.1e-27 124.4 114 57.0
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 2.1e-26 122.9 125 52.0
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.5e-24 116.7 104 66.3
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 5.6e-24 114.8 120 50.8
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 4.7e-23 111.7 96 58.3
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 1.8e-22 109.8 96 57.3
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 5.2e-22 108.2 137 46.7
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 1.2e-21 107.1 145 47.6
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 1.5e-21 106.7 87 60.9
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 2.6e-21 105.9 100 53.0
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 5.8e-21 104.8 142 45.8
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 2.2e-20 102.8 93 53.8
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 2.9e-20 102.4 108 51.9
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 2.9e-20 102.4 107 50.5
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 3.8e-20 102.1 113 53.1
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 8.4e-20 100.9 101 54.5
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 1.9e-19 99.8 85 60.0
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 3.2e-19 99.0 146 44.5
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 3.2e-19 99.0 130 43.8
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 5.4e-19 98.2 130 43.8
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 1.6e-18 96.7 90 51.1
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 2.7e-18 95.9 145 44.8
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 3.5e-18 95.5 93 50.5
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 1.0e-17 94.0 144 42.4
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 1.0e-17 94.0 106 50.9
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 1.0e-17 94.0 132 43.2
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 1.3e-17 93.6 135 41.5
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 1.3e-17 93.6 60 68.3
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 1.7e-17 93.2 104 49.0
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 2.3e-17 92.8 63 74.6
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 6.6e-17 91.3 131 44.3
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 6.6e-17 91.3 131 44.3
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 6.6e-17 91.3 111 48.6
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 1.5e-16 90.1 118 48.3
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 1.9e-16 89.7 150 38.0
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 1.9e-16 89.7 130 46.9
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 1.9e-16 89.7 115 46.1
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 1.9e-16 89.7 133 43.6
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 2.5e-16 89.4 62 67.7
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 2.5e-16 89.4 66 62.1
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 3.3e-16 89.0 111 53.2
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 4.3e-16 88.6 111 45.0
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 5.6e-16 88.2 69 65.2
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 5.6e-16 88.2 133 46.6
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 7.3e-16 87.8 143 42.7
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 7.3e-16 87.8 58 67.2
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 9.6e-16 87.4 154 42.2
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 9.6e-16 87.4 108 45.4
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 2.8e-15 85.9 143 41.3
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 2.8e-15 85.9 64 64.1
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 2.8e-15 85.9 142 41.5
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.8e-15 85.9 52 80.8
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 3.6e-15 85.5 91 53.8
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 3.6e-15 85.5 115 46.1
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 3.6e-15 85.5 115 46.1
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 3.6e-15 85.5 93 51.6
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 8.1e-15 84.3 104 48.1
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 8.1e-15 84.3 113 49.6
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 1.1e-14 84.0 71 59.2
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 1.1e-14 84.0 120 44.2
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 1.4e-14 83.6 131 42.0
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 1.4e-14 83.6 131 42.0
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 1.4e-14 83.6 131 42.0
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.8e-14 83.2 104 47.1
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 3.1e-14 82.4 62 62.9
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 3.1e-14 82.4 106 46.2
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 4.0e-14 82.0 142 40.1
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 4.0e-14 82.0 103 47.6
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 5.3e-14 81.6 140 42.1
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 5.3e-14 81.6 136 39.0
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 6.9e-14 81.3 141 36.9
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 6.9e-14 81.3 50 88.0
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 9.0e-14 80.9 96 44.8
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 9.0e-14 80.9 104 47.1
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 1.5e-13 80.1 63 61.9
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 1.5e-13 80.1 86 52.3
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 1.5e-13 80.1 93 48.4
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 1.5e-13 80.1 81 50.6
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 4.5e-13 78.6 58 62.1
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 5.8e-13 78.2 118 43.2
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 1.3e-12 77.0 122 43.4
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 1.3e-12 77.0 58 62.1
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 2.2e-12 76.3 79 49.4
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 3.8e-12 75.5 95 52.6
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 4.9e-12 75.1 148 37.8
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 6.4e-12 74.7 99 46.5
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 9.3e-11 70.9 56 60.7
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 1.2e-10 70.5 94 42.6
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 2.1e-10 69.7 65 53.8
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 2.1e-10 69.7 55 61.8
Nitab4.5_0006484g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 5.1e-09 65.1 76 46.1
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 6.7e-09 64.7 58 53.4
Mapoly0006s0085 Marchantia polymorpha HOM05D007527 ORTHO05D009523 1.3e-07 60.5 70 50.0


User provided reference genes

Program Settings