Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 1.0e-100 370.2 199 100.0
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 2.5e-78 295.8 199 82.9
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 3.0e-68 262.3 191 73.8
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 4.3e-67 258.5 198 71.7
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 1.4e-62 243.4 191 70.7
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 1.4e-62 243.4 198 67.2
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 5.5e-62 241.5 198 67.2
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 7.2e-62 241.1 198 66.7
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 9.4e-62 240.7 202 66.3
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.6e-61 240.0 202 66.8
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 2.1e-61 239.6 197 67.0
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 2.7e-61 239.2 195 65.6
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 2.7e-61 239.2 195 66.2
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 6.1e-61 238.0 198 68.7
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 1.0e-60 237.3 198 66.7
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 1.8e-60 236.5 171 70.8
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 1.8e-60 236.5 196 66.3
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 2.3e-60 236.1 199 67.8
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 2.3e-60 236.1 161 77.6
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 5.1e-60 235.0 163 78.5
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.5e-59 233.4 199 64.8
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 2.0e-59 233.0 195 68.7
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 2.0e-59 233.0 196 65.3
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 2.6e-59 232.6 145 79.3
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 4.4e-59 231.9 197 65.0
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 5.7e-59 231.5 182 68.7
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 9.7e-59 230.7 192 67.2
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 1.3e-58 230.3 198 64.6
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 1.7e-58 229.9 195 64.1
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.2e-58 229.6 198 63.6
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 2.2e-58 229.6 201 63.7
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 2.8e-58 229.2 196 66.3
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 3.7e-58 228.8 199 65.8
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 3.7e-58 228.8 202 63.9
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 4.8e-58 228.4 198 64.6
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 4.8e-58 228.4 196 64.8
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 6.3e-58 228.0 152 77.0
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 6.3e-58 228.0 198 63.1
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 6.3e-58 228.0 199 63.8
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 6.3e-58 228.0 148 78.4
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 1.4e-57 226.9 196 64.3
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 3.1e-57 225.7 159 74.2
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 4.1e-57 225.3 196 63.8
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 5.3e-57 224.9 198 63.6
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 5.3e-57 224.9 195 62.6
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 6.9e-57 224.6 160 73.1
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 9.1e-57 224.2 137 81.0
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 1.2e-56 223.8 187 68.4
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 1.5e-56 223.4 182 71.4
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 4.5e-56 221.9 198 65.2
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 7.7e-56 221.1 156 73.7
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 7.7e-56 221.1 197 66.0
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 1.0e-55 220.7 159 73.6
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.3e-55 220.3 173 69.9
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 1.3e-55 220.3 195 63.6
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 1.7e-55 219.9 140 80.0
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 1.7e-55 219.9 140 79.3
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 2.2e-55 219.5 168 72.0
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 2.2e-55 219.5 198 61.6
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 2.9e-55 219.2 161 72.0
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 3.8e-55 218.8 201 64.7
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 3.8e-55 218.8 162 71.6
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 3.8e-55 218.8 195 63.1
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 5.0e-55 218.4 200 64.0
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 5.0e-55 218.4 184 64.1
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 5.0e-55 218.4 160 74.4
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 5.0e-55 218.4 140 79.3
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 6.5e-55 218.0 191 63.9
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 8.5e-55 217.6 167 70.7
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 8.5e-55 217.6 176 66.5
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 1.1e-54 217.2 168 70.2
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 1.4e-54 216.9 195 62.6
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 1.4e-54 216.9 192 63.0
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 4.2e-54 215.3 156 75.6
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 5.5e-54 214.9 184 66.8
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 5.5e-54 214.9 184 66.8
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 5.5e-54 214.9 199 64.3
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 5.5e-54 214.9 198 62.6
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 9.4e-54 214.2 170 69.4
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.2e-53 213.8 175 68.0
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 1.6e-53 213.4 183 66.7
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 2.1e-53 213.0 189 64.0
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 2.1e-53 213.0 183 66.7
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 2.7e-53 212.6 195 61.5
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 2.7e-53 212.6 195 61.5
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 3.6e-53 212.2 199 62.3
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 4.7e-53 211.8 184 66.3
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 4.7e-53 211.8 184 66.3
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 7.9e-53 211.1 195 61.0
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 1.0e-52 210.7 193 61.7
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 1.4e-52 210.3 179 64.2
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.4e-52 210.3 174 66.7
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 1.8e-52 209.9 198 64.6
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 1.8e-52 209.9 191 61.8
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 2.3e-52 209.5 176 66.5
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 3.0e-52 209.1 198 59.6
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 3.9e-52 208.8 195 60.5
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 5.2e-52 208.4 184 64.1
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 5.2e-52 208.4 166 67.5
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 6.7e-52 208.0 196 63.3
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 6.7e-52 208.0 181 64.1
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 1.5e-51 206.8 172 65.7
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 1.5e-51 206.8 180 64.4
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.6e-51 206.1 174 66.1
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 2.6e-51 206.1 179 65.9
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 1.3e-50 203.8 193 61.7
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 4.1e-49 198.7 172 64.0
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 7.0e-49 198.0 170 63.5
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.2e-48 197.2 184 60.3
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.6e-48 196.8 146 69.9
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 1.6e-48 196.8 141 68.8
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 3.8e-47 192.2 146 70.5
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 9.4e-46 187.6 193 59.1
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 1.6e-45 186.8 136 70.6
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 1.6e-45 186.8 193 57.5
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 2.1e-45 186.4 180 60.0
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 3.6e-45 185.7 173 60.1
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 5.2e-44 181.8 181 62.4
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 6.7e-44 181.4 181 62.4
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 6.3e-42 174.9 175 58.9
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 1.4e-41 173.7 133 63.9
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 5.3e-41 171.8 136 65.4
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 5.3e-41 171.8 134 65.7
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 1.3e-39 167.2 136 64.0
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 2.9e-39 166.0 197 54.8
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.5e-38 162.9 132 62.9
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 3.7e-34 149.1 130 67.7
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.7e-31 140.2 113 61.1
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.8e-28 130.2 141 52.5
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 9.8e-27 124.4 107 65.4
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 2.8e-26 122.9 101 65.3
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 1.1e-22 110.9 63 84.1
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 1.1e-22 110.9 63 84.1
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 5.6e-22 108.6 75 73.3
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 3.6e-21 105.9 198 41.9
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 7.5e-19 98.2 70 70.0
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 1.0e-15 87.8 67 67.2
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 7.0e-09 65.1 45 73.3
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 6.0e-08 62.0 113 42.5


User provided reference genes

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