Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 9.3e-223 776.5 389 100.0
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 3.5e-129 465.7 307 78.5
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 4.2e-106 389.0 304 67.8
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 5.1e-104 382.1 309 64.4
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 6.0e-97 358.6 304 61.2
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 1.1e-93 347.8 297 61.3
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.4e-93 347.4 281 67.3
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 1.4e-93 347.4 266 65.8
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 1.4e-93 347.4 286 62.9
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 6.9e-93 345.1 325 57.8
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 6.9e-93 345.1 283 62.9
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 2.0e-92 343.6 288 60.1
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 5.8e-92 342.0 267 65.2
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 2.2e-91 340.1 298 60.1
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 1.4e-90 337.4 296 60.5
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 2.5e-90 336.7 287 59.2
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 4.2e-90 335.9 275 61.5
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 1.6e-89 334.0 296 59.5
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 7.9e-89 331.6 264 62.1
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 7.9e-89 331.6 285 59.6
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 7.9e-89 331.6 295 58.6
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.0e-88 331.3 285 60.0
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.0e-88 331.3 284 59.5
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.3e-88 330.9 301 58.8
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.8e-88 330.5 290 59.7
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 3.0e-88 329.7 270 61.9
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 3.0e-88 329.7 303 54.8
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 3.0e-88 329.7 287 58.9
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 5.1e-88 328.9 266 62.0
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 6.7e-88 328.6 289 57.1
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 6.7e-88 328.6 285 59.6
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 6.7e-88 328.6 263 63.5
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 6.7e-88 328.6 277 60.3
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 8.7e-88 328.2 270 62.2
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 1.9e-87 327.0 290 57.6
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 3.3e-87 326.2 263 63.5
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 4.3e-87 325.9 275 61.1
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 4.3e-87 325.9 273 59.3
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 5.7e-87 325.5 292 57.5
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 9.6e-87 324.7 329 52.9
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 9.6e-87 324.7 296 58.1
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 9.6e-87 324.7 285 59.6
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 1.3e-86 324.3 303 56.4
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 1.3e-86 324.3 290 57.6
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 2.1e-86 323.6 270 60.7
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 2.1e-86 323.6 298 56.7
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.8e-86 323.2 285 58.6
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 3.7e-86 322.8 268 62.3
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 6.2e-86 322.0 302 56.3
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 8.2e-86 321.6 270 60.7
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 1.4e-85 320.9 276 58.0
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 2.4e-85 320.1 301 57.1
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 3.1e-85 319.7 298 54.7
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 4.1e-85 319.3 194 76.3
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 5.3e-85 318.9 285 57.9
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 5.3e-85 318.9 267 61.4
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 5.3e-85 318.9 266 59.0
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 6.9e-85 318.5 298 55.0
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 6.9e-85 318.5 269 61.0
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 1.5e-84 317.4 312 55.8
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 2.0e-84 317.0 269 59.1
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 3.4e-84 316.2 197 75.6
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 4.5e-84 315.8 264 59.8
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 5.8e-84 315.5 264 59.5
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 1.0e-83 314.7 264 60.2
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 1.0e-83 314.7 270 62.2
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 1.3e-83 314.3 309 51.8
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 2.2e-83 313.5 269 59.9
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 2.9e-83 313.2 264 59.8
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 3.8e-83 312.8 199 74.9
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 6.5e-83 312.0 264 59.5
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 2.5e-82 310.1 269 58.0
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 1.2e-81 307.8 270 56.3
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 1.6e-81 307.4 307 51.1
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 1.0e-80 304.7 291 55.3
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 1.0e-80 304.7 303 55.1
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 1.0e-80 304.7 273 59.7
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 2.3e-80 303.5 291 55.0
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 2.3e-80 303.5 279 56.6
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 3.0e-80 303.1 272 55.1
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 3.0e-80 303.1 267 56.6
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 5.1e-80 302.4 194 72.7
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 8.7e-80 301.6 298 54.0
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 8.7e-80 301.6 275 55.3
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 1.1e-79 301.2 270 54.4
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 1.9e-79 300.4 198 71.7
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 4.3e-79 299.3 276 54.7
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 5.7e-79 298.9 262 56.5
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 5.7e-79 298.9 262 56.5
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 5.7e-79 298.9 197 72.1
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 7.4e-79 298.5 262 56.5
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 7.4e-79 298.5 281 54.4
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 1.3e-78 297.7 270 54.4
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 3.7e-78 296.2 192 71.9
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 3.7e-78 296.2 336 50.0
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 8.2e-78 295.0 276 56.2
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 3.1e-77 293.1 259 56.8
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 5.3e-77 292.4 250 58.4
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 5.3e-77 292.4 198 69.7
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 5.0e-75 285.8 245 57.6
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 6.5e-75 285.4 265 53.6
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 8.5e-75 285.0 265 53.6
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 9.4e-74 281.6 265 53.6
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 1.2e-73 281.2 178 74.2
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 3.6e-73 279.6 296 49.0
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 5.1e-72 275.8 199 62.3
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 5.7e-71 272.3 197 64.0
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 9.7e-71 271.6 354 44.6
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 5.9e-68 262.3 172 72.1
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 4.7e-65 252.7 246 54.1
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 4.4e-63 246.1 236 53.0
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 5.3e-61 239.2 190 58.9
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 2.0e-60 237.3 194 56.7
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 5.2e-56 222.6 194 54.6
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 1.8e-53 214.2 198 50.5
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 2.3e-48 197.2 124 71.8
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 2.3e-48 197.2 124 75.8
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 4.4e-47 193.0 193 48.2
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.2e-31 141.7 232 38.4
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 3.9e-27 126.7 145 44.8
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.8e-25 120.6 83 67.5
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.0e-24 118.6 93 58.1
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 6.0e-20 102.8 68 73.5
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.3e-19 101.7 61 75.4
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.3e-19 101.7 61 75.4
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 7.3e-18 95.9 68 66.2
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.6e-17 94.7 218 32.1
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 2.8e-17 94.0 161 37.3
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 8.1e-17 92.4 114 47.4
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 1.7e-14 84.7 164 35.4
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 2.2e-14 84.3 162 34.0
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 6.4e-14 82.8 162 34.6
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 1.1e-13 82.0 159 34.6
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 1.1e-13 82.0 162 34.6
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.1e-13 82.0 131 36.6
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 1.1e-13 82.0 174 32.8
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 1.4e-13 81.6 162 34.0
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.4e-13 81.6 162 34.0
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 2.4e-13 80.9 144 34.0
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 5.4e-13 79.7 144 34.0
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 7.1e-13 79.3 162 32.7
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 7.1e-13 79.3 162 32.7
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 7.1e-13 79.3 158 32.3
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 9.2e-13 79.0 162 32.7
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.2e-12 78.6 147 33.3
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 1.2e-12 78.6 159 32.1
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 2.1e-12 77.8 156 32.7
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 2.1e-12 77.8 157 30.6
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 2.1e-12 77.8 133 34.6
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 2.7e-12 77.4 158 32.3
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 3.5e-12 77.0 167 34.1
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 3.5e-12 77.0 147 32.7
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 3.5e-12 77.0 144 32.6
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 4.6e-12 76.6 162 31.5
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 4.6e-12 76.6 161 30.4
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 6.0e-12 76.3 116 34.5
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 7.8e-12 75.9 129 33.3
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 7.8e-12 75.9 129 33.3
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 7.8e-12 75.9 144 30.6
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 1.0e-11 75.5 159 29.6
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 1.3e-11 75.1 128 30.5
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.3e-11 75.1 159 32.1
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 1.7e-11 74.7 128 32.8
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 6.6e-11 72.8 121 34.7
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 1.1e-10 72.0 131 32.8
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 1.1e-10 72.0 131 34.4
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 1.9e-10 71.2 140 28.6
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 1.9e-10 71.2 143 34.3
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 2.5e-10 70.9 125 34.4
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 3.3e-10 70.5 204 27.5
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 4.3e-10 70.1 138 31.2
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 5.6e-10 69.7 163 30.1
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 3.6e-09 67.0 144 31.9
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 1.4e-08 65.1 90 36.7
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 3.1e-08 63.9 63 50.8
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 2.0e-07 61.2 107 30.8
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.6e-07 60.8 196 26.5
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 3.4e-07 60.5 118 33.1
TAR628G0330 Trochodendron aralioides HOM05D003844 ORTHO05D004534 7.6e-07 59.3 136 31.6
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 2.9e-06 57.4 145 28.3
EL10Ac1g01762 Beta vulgaris HOM05D003844 ORTHO05D004534 6.4e-06 56.2 141 29.8
AUR62041676 Chenopodium quinoa HOM05D003844 ORTHO05D004534 6.4e-06 56.2 174 25.9


User provided reference genes

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