Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 4.8e-203 711.1 394 100.0
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 7.1e-170 600.9 334 92.5
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.3e-163 580.1 396 81.6
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 2.2e-163 579.3 402 80.8
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 7.9e-145 517.7 400 73.5
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 4.8e-142 508.4 329 79.6
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 4.3e-135 485.3 342 74.3
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 2.2e-131 473.0 332 72.6
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 7.1e-130 468.0 326 73.9
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.1e-129 466.5 326 72.4
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 7.9e-129 464.5 325 74.8
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 1.8e-128 463.4 402 67.7
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 3.9e-128 462.2 352 69.3
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 1.5e-127 460.3 334 71.0
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 2.5e-127 459.5 330 69.7
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 1.3e-126 457.2 329 70.8
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 2.2e-126 456.4 336 70.2
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 4.8e-126 455.3 330 69.4
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 1.1e-125 454.1 316 73.4
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 6.9e-125 451.4 408 61.0
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 2.0e-124 449.9 355 67.0
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 2.6e-124 449.5 324 72.2
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 3.4e-124 449.1 325 69.5
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 4.5e-124 448.7 330 69.7
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 5.9e-124 448.4 319 71.5
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 5.0e-123 445.3 342 68.7
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 8.5e-123 444.5 325 70.8
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 8.5e-123 444.5 329 70.8
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 1.4e-122 443.7 332 68.1
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.5e-122 443.0 314 71.7
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 2.5e-122 443.0 334 67.7
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 2.5e-122 443.0 321 69.5
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 2.5e-122 443.0 403 60.8
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 7.2e-122 441.4 325 70.2
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 2.1e-121 439.9 336 68.5
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 1.8e-120 436.8 332 67.2
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 3.9e-120 435.6 326 68.4
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 1.5e-119 433.7 330 69.7
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 3.3e-119 432.6 326 67.5
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 5.7e-119 431.8 320 70.9
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 7.4e-119 431.4 325 69.8
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 9.7e-119 431.0 326 68.4
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 1.7e-118 430.3 331 68.0
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 2.2e-118 429.9 327 69.7
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 2.2e-118 429.9 393 62.1
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 4.8e-118 428.7 327 69.1
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 8.2e-118 427.9 330 69.4
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 1.4e-117 427.2 408 63.2
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 1.8e-117 426.8 325 68.9
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 1.8e-117 426.8 392 65.6
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 1.8e-117 426.8 326 66.9
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 2.4e-117 426.4 392 62.2
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 4.1e-117 425.6 330 67.0
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 4.1e-117 425.6 329 67.5
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.3e-117 425.2 408 61.3
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 9.1e-117 424.5 408 61.5
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 1.2e-116 424.1 314 71.3
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 1.5e-116 423.7 325 69.2
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 1.5e-116 423.7 332 69.0
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 1.5e-116 423.7 332 69.3
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 2.0e-116 423.3 288 75.0
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 2.6e-116 422.9 331 65.3
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 2.6e-116 422.9 327 66.4
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 3.4e-116 422.5 325 69.5
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 5.9e-116 421.8 328 66.8
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 5.9e-116 421.8 327 66.1
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 1.7e-115 420.2 330 66.7
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 2.2e-115 419.9 319 70.2
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 3.8e-115 419.1 331 65.3
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 3.8e-115 419.1 331 65.3
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 3.8e-115 419.1 413 61.5
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 5.5e-114 415.2 284 74.3
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 7.2e-114 414.8 324 66.0
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 1.6e-113 413.7 327 64.2
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 1.6e-113 413.7 312 66.3
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.6e-113 412.5 333 64.3
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 4.7e-113 412.1 326 64.7
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 1.0e-112 411.0 330 65.2
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 1.4e-112 410.6 334 64.7
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.0e-112 409.5 326 64.4
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 3.0e-112 409.5 286 73.4
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 5.1e-112 408.7 323 64.4
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 5.1e-112 408.7 378 59.0
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 6.7e-112 408.3 328 67.4
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 6.7e-112 408.3 377 59.9
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 1.1e-111 407.5 327 64.8
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 7.4e-111 404.8 327 63.6
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 2.2e-110 403.3 327 63.6
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 4.8e-110 402.1 409 57.7
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 1.1e-109 401.0 334 62.6
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 4.1e-109 399.1 343 61.5
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 6.9e-109 398.3 340 62.4
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 9.1e-109 397.9 327 64.5
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 2.0e-108 396.7 339 61.9
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 2.6e-108 396.4 293 67.9
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 5.5e-106 388.7 351 60.4
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 9.4e-106 387.9 335 62.1
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 6.1e-105 385.2 309 64.4
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 8.0e-105 384.8 356 60.4
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 5.2e-104 382.1 325 61.2
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 7.0e-101 371.7 289 66.1
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.6e-100 369.8 520 49.0
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 2.2e-99 366.7 347 58.5
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 1.6e-97 360.5 298 62.1
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 1.3e-94 350.9 325 58.5
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 8.2e-94 348.2 298 59.7
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 1.1e-93 347.8 308 59.1
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 6.5e-91 338.6 341 54.0
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 3.4e-87 326.2 292 63.0
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 5.7e-87 325.5 305 58.0
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 7.7e-84 315.1 308 56.5
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 8.6e-83 311.6 225 72.0
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 1.5e-71 274.2 226 62.4
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 5.6e-66 255.8 335 43.0
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 4.7e-65 252.7 215 63.3
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 8.9e-64 248.4 328 43.6
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 9.2e-53 211.8 308 44.5
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 2.1e-49 200.7 206 63.1
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 6.2e-49 199.1 134 74.6
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 4.4e-47 193.0 116 80.2
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 7.8e-44 182.2 228 57.0
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 3.9e-43 179.9 156 60.9
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.8e-41 173.7 159 59.7
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 4.7e-41 172.9 215 50.7
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 5.8e-39 166.0 382 31.4
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 7.6e-39 165.6 112 75.9
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 7.6e-39 165.6 361 33.0
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 1.7e-38 164.5 261 40.2
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 4.9e-38 162.9 174 52.9
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.2e-28 131.7 75 89.3
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 2.3e-27 127.5 98 64.3
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 1.3e-25 121.7 170 42.4
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.4e-24 117.5 81 75.3
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 4.0e-24 116.7 92 66.3
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 7.9e-20 102.4 62 82.3
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 5.1e-19 99.8 96 55.2
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 5.1e-19 99.8 156 41.7
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.1e-19 99.8 178 41.0
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 6.7e-19 99.4 59 83.1
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 1.1e-18 98.6 56 85.7
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 1.1e-18 98.6 68 75.0
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 1.5e-18 98.2 69 72.5
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 7.4e-18 95.9 174 36.2
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 9.6e-18 95.5 337 27.9
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 6.2e-17 92.8 59 76.3
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 8.2e-17 92.4 135 43.0
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 3.4e-15 87.0 106 48.1
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 4.5e-15 86.7 83 57.8
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 2.7e-12 77.4 329 26.4
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.6e-12 76.6 89 49.4
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 7.4e-10 69.3 111 47.7
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 7.7e-07 59.3 33 84.8
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 5.0e-06 56.6 60 46.7
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 8.5e-06 55.8 169 22.5


User provided reference genes

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