Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16687 Vaccinium macrocarpon HOM05D000029 ORTHO05D004317 2.6e-99 365.9 264 100.0
vmacro16688 Vaccinium macrocarpon HOM05D000029 ORTHO05D004317 2.1e-56 223.4 267 73.4
Rhsim12G0170000 Rhododendron simsii HOM05D000029 ORTHO05D004317 9.5e-54 214.5 251 74.5
Hma1.2p1_2431F.1_g322035 Hydrangea macrophylla HOM05D000029 ORTHO05D004317 3.9e-39 166.0 249 64.7
Actinidia08839 Actinidia chinensis HOM05D000029 ORTHO05D004317 1.2e-35 154.5 270 62.6
Peaxi162Scf00089g00111 Petunia axillaris HOM05D000029 ORTHO05D004317 1.1e-33 147.9 239 64.9
PGSC0003DMG400015157 Solanum tuberosum HOM05D000029 ORTHO05D004317 1.9e-33 147.1 261 62.8
Sopen03g030900 Solanum pennellii HOM05D000029 ORTHO05D004317 2.4e-33 146.7 258 62.8
CAN.G126.94 Capsicum annuum HOM05D000029 ORTHO05D004317 5.4e-33 145.6 261 62.8
Haze_07630 Corylus avellana HOM05D000029 ORTHO05D004317 7.1e-33 145.2 264 63.3
Actinidia36763 Actinidia chinensis HOM05D000029 ORTHO05D004317 2.7e-32 143.3 265 59.6
Cfa009515 Carpinus fangiana HOM05D000029 ORTHO05D004317 1.7e-31 140.6 241 66.0
Prupe.5G161700 Prunus persica HOM05D000029 ORTHO05D004317 1.7e-31 140.6 254 62.2
Lsat_1_v5_gn_4_78640 Lactuca sativa HOM05D000029 ORTHO05D004317 3.0e-31 139.8 274 60.2
Solyc03g111800.2 Solanum lycopersicum HOM05D000029 ORTHO05D004317 1.5e-30 137.5 253 61.7
Peaxi162Scf00763g00048 Petunia axillaris HOM05D000029 ORTHO05D004317 7.4e-30 135.2 251 62.2
TAR371G0353 Trochodendron aralioides HOM05D000029 ORTHO05D004317 9.6e-30 134.8 259 61.0
TAR374G0353 Trochodendron aralioides HOM05D000029 ORTHO05D004317 3.6e-29 132.9 252 62.3
GSVIVG01007593001 Vitis vinifera HOM05D000029 ORTHO05D004317 3.6e-29 132.9 232 65.9
CsaV3_1G000910 Cucumis sativus L. HOM05D000029 ORTHO05D004317 6.2e-29 132.1 242 62.0
MELO3C026243.2 Cucumis melo HOM05D000029 ORTHO05D004317 1.1e-28 131.3 243 62.6
Nitab4.5_0000003g0890 Nicotiana tabacum HOM05D000029 ORTHO05D004317 1.4e-28 131.0 265 61.9
QL10p005937 Quercus lobata HOM05D000029 ORTHO05D004317 1.4e-28 131.0 236 64.8
Manes.06G112200 Manihot esculenta HOM05D000029 ORTHO05D004317 1.8e-28 130.6 267 59.9
CANSAT80G0665 Cannabis sativa HOM05D000029 ORTHO05D004317 4.0e-28 129.4 241 63.9
Nn4g22532 Nelumbo nucifera HOM05D000029 ORTHO05D004317 5.3e-28 129.0 236 65.3
QL10p005929 Quercus lobata HOM05D000029 ORTHO05D004317 6.9e-28 128.6 239 64.4
Solyc06g071810.1 Solanum lycopersicum HOM05D000029 ORTHO05D004317 6.9e-28 128.6 238 63.0
TPR.G24763 Trifolium pratense HOM05D000029 ORTHO05D004317 9.0e-28 128.3 272 57.4
TAR629G0904 Trochodendron aralioides HOM05D000029 ORTHO05D004317 9.0e-28 128.3 236 63.1
Dinv38500 Davidia involucrata HOM05D000029 ORTHO05D004317 1.2e-27 127.9 165 67.3
Sopen06g028100 Solanum pennellii HOM05D000029 ORTHO05D004317 1.5e-27 127.5 251 61.4
Atru.chr9.1809 Acer truncatum HOM05D000029 ORTHO05D004317 2.0e-27 127.1 251 61.8
DCAR_007458 Daucus carota HOM05D000029 ORTHO05D004317 2.6e-27 126.7 265 59.6
CiPaw.12G033500 Carya illinoinensis HOM05D000029 ORTHO05D004317 3.4e-27 126.3 252 60.3
Dinv11127 Davidia involucrata HOM05D000029 ORTHO05D004317 4.5e-27 125.9 246 64.2
Potri.015G086800 Populus trichocarpa HOM05D000029 ORTHO05D004317 4.5e-27 125.9 261 59.4
PGSC0003DMG400027071 Solanum tuberosum HOM05D000029 ORTHO05D004317 4.5e-27 125.9 251 60.6
PGR044G2134 Punica granatum HOM05D000029 ORTHO05D004317 9.9e-27 124.8 236 64.0
COL.COLO4_19805 Corchorus olitorius HOM05D000029 ORTHO05D004317 1.7e-26 124.0 254 59.8
Nitab4.5_0000510g0110 Nicotiana tabacum HOM05D000029 ORTHO05D004317 1.7e-26 124.0 165 64.8
AUR62001233 Chenopodium quinoa HOM05D000029 ORTHO05D004317 2.9e-26 123.2 256 58.2
Manes.14G057400 Manihot esculenta HOM05D000029 ORTHO05D004317 2.9e-26 123.2 172 65.7
Sabra15G0109500 Salix brachista HOM05D000029 ORTHO05D004317 3.8e-26 122.9 261 59.4
TWI39G0879 Tripterygium wilfordii HOM05D000029 ORTHO05D004317 3.8e-26 122.9 249 62.2
EL10Ac7g18030 Beta vulgaris HOM05D000029 ORTHO05D004317 4.9e-26 122.5 233 60.5
CiPaw.11G014500 Carya illinoinensis HOM05D000029 ORTHO05D004317 6.4e-26 122.1 251 59.8
Nitab4.5_0004177g0010 Nicotiana tabacum HOM05D000029 ORTHO05D004317 6.4e-26 122.1 240 63.8
Potri.012G090500 Populus trichocarpa HOM05D000029 ORTHO05D004317 6.4e-26 122.1 171 64.3
Medtr3g075440 Medicago truncatula HOM05D000029 ORTHO05D004317 1.9e-25 120.6 243 60.9
CSS0019012 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D004317 2.4e-25 120.2 246 61.4
Eucgr.K02775 Eucalyptus grandis HOM05D000029 ORTHO05D004317 2.4e-25 120.2 250 59.2
Thecc.03G118500 Theobroma cacao HOM05D000029 ORTHO05D004317 3.2e-25 119.8 238 59.7
Eucgr.L02485 Eucalyptus grandis HOM05D000029 ORTHO05D004317 7.1e-25 118.6 245 59.2
Ah.15g095490 Amaranthus hybridus HOM05D000029 ORTHO05D004317 1.2e-24 117.9 240 58.3
FvH4_5g06700 Fragaria vesca HOM05D000029 ORTHO05D004317 1.6e-24 117.5 238 60.9
FAN18G0676 Fragaria x ananassa HOM05D000029 ORTHO05D004317 1.6e-24 117.5 238 60.9
ClCG06G017540 Citrullus lanatus HOM05D000029 ORTHO05D004317 2.1e-24 117.1 256 60.2
ECA232G0521 Erigeron canadensis HOM05D000029 ORTHO05D004317 2.1e-24 117.1 169 63.3
Gorai.008G203300 Gossypium raimondii HOM05D000029 ORTHO05D004317 2.7e-24 116.7 253 59.3
Psat5g118160 Pisum sativum HOM05D000029 ORTHO05D004317 3.5e-24 116.3 212 66.0
Gohir.D12G189500 Gossypium hirsutum HOM05D000029 ORTHO05D004317 6.0e-24 115.5 253 59.3
Sabra12G0065300 Salix brachista HOM05D000029 ORTHO05D004317 6.0e-24 115.5 239 62.3
Gohir.A12G186500 Gossypium hirsutum HOM05D000029 ORTHO05D004317 1.8e-23 114.0 263 57.4
Duzib205G0333 Durio zibethinus HOM05D000029 ORTHO05D004317 3.0e-23 113.2 248 58.9
Cc04_g10890 Coffea canephora HOM05D000029 ORTHO05D004317 3.9e-23 112.8 262 56.5
Duzib068G0968 Durio zibethinus HOM05D000029 ORTHO05D004317 3.9e-23 112.8 238 59.7
FAN08G3040 Fragaria x ananassa HOM05D000029 ORTHO05D004317 6.7e-23 112.1 239 61.1
Nn3g16641 Nelumbo nucifera HOM05D000029 ORTHO05D004317 6.7e-23 112.1 237 61.2
RcHm_v2.0_Chr7g0191951 Rosa chinensis HOM05D000029 ORTHO05D004317 1.5e-22 110.9 237 60.3
FAN04G2376 Fragaria x ananassa HOM05D000029 ORTHO05D004317 1.9e-22 110.5 252 57.5
Nn6g31998 Nelumbo nucifera HOM05D000029 ORTHO05D004317 4.3e-22 109.4 118 54.2
COL.COLO4_05418 Corchorus olitorius HOM05D000029 ORTHO05D004317 5.6e-22 109.0 114 52.6
HanXRQChr05g0145501 Helianthus annuus HOM05D000029 ORTHO05D004317 1.3e-21 107.8 120 50.0
RcHm_v2.0_Chr7g0191971 Rosa chinensis HOM05D000029 ORTHO05D004317 1.3e-21 107.8 237 58.6
SalBow5G1793 Salvia bowleyana HOM05D000029 ORTHO05D004317 2.1e-21 107.1 166 63.3
HanXRQChr16g0497561 Helianthus annuus HOM05D000029 ORTHO05D004317 3.7e-21 106.3 242 61.2
Lsat_1_v5_gn_1_28600 Lactuca sativa HOM05D000029 ORTHO05D004317 8.1e-21 105.1 241 59.3
Lj5A133G90 Lonicera japonica HOM05D000029 ORTHO05D004317 1.4e-20 104.4 227 61.7
Cfa019285 Carpinus fangiana HOM05D000029 ORTHO05D004317 1.8e-20 104.0 192 69.8
Lalb_Chr23g0273431 Lupinus albus HOM05D000029 ORTHO05D004317 1.8e-20 104.0 254 48.8
PSO067G0057 Papaver somniferum HOM05D000029 ORTHO05D004317 1.8e-20 104.0 242 52.5
TPR.G35171 Trifolium pratense HOM05D000029 ORTHO05D004317 1.8e-20 104.0 204 65.2
Ciclev10019280m.g Citrus clementina HOM05D000029 ORTHO05D004317 3.1e-20 103.2 110 50.9
Gohir.D03G102500 Gossypium hirsutum HOM05D000029 ORTHO05D004317 3.1e-20 103.2 169 58.0
Gorai.003G108000 Gossypium raimondii HOM05D000029 ORTHO05D004317 5.3e-20 102.4 239 57.7
PSO063G4241 Papaver somniferum HOM05D000029 ORTHO05D004317 9.0e-20 101.7 240 52.5
Phvul.009G171200 Phaseolus vulgaris HOM05D000029 ORTHO05D004317 9.0e-20 101.7 243 59.3
Migut.O00198 Erythranthe guttata HOM05D000029 ORTHO05D004317 1.5e-19 100.9 235 59.6
Oeu056958.1 Olea europaea HOM05D000029 ORTHO05D004317 5.8e-19 99.0 234 60.7
Oeu056956.1 Olea europaea HOM05D000094 ORTHO05D004317 7.6e-19 98.6 234 59.8
Gohir.A03G063800 Gossypium hirsutum HOM05D000029 ORTHO05D004317 1.3e-18 97.8 280 52.5
MBI06_g04696_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D004317 2.2e-18 97.1 112 50.0
CAN.G993.16 Capsicum annuum HOM05D000029 ORTHO05D004317 2.9e-18 96.7 229 60.3
HanXRQChr04g0100951 Helianthus annuus HOM05D000029 ORTHO05D004317 2.9e-18 96.7 236 57.6
Ca_16112_v3 Cicer arietinum L. HOM05D000029 ORTHO05D004317 6.5e-18 95.5 111 52.3
HanXRQChr02g0035371 Helianthus annuus HOM05D000029 ORTHO05D004317 3.2e-17 93.2 241 55.6
Thhalv10016374m.g Eutrema salsugineum HOM05D000029 ORTHO05D004317 5.5e-17 92.4 123 45.5
AT2G31880 Arabidopsis thaliana HOM05D000029 ORTHO05D004317 1.2e-16 91.3 122 45.1
BcaC01g05928 Brassica carinata HOM05D000029 ORTHO05D004317 1.2e-16 91.3 125 43.2
A03p17930 Brassica napus HOM05D000029 ORTHO05D004317 1.6e-16 90.9 125 43.2
Nn6g35704 Nelumbo nucifera HOM05D000029 ORTHO05D004317 1.6e-16 90.9 101 55.4
AL4G27170 Arabidopsis lyrata HOM05D000029 ORTHO05D004317 2.1e-16 90.5 122 45.9
BraA03t11057Z Brassica rapa HOM05D000029 ORTHO05D004317 2.1e-16 90.5 125 43.2
Sp4g14230 Schrenkiella parvula HOM05D000029 ORTHO05D004317 2.1e-16 90.5 125 46.4
BolC3t14480H Brassica oleracea HOM05D000029 ORTHO05D004317 2.7e-16 90.1 125 43.2
BcaB01g04010 Brassica carinata HOM05D000029 ORTHO05D004317 3.5e-16 89.7 122 45.1
SGA_v2.0_scaffold90G27804 Striga asiatica HOM05D000029 ORTHO05D004317 4.6e-16 89.4 109 49.5
C03p21000 Brassica napus HOM05D000029 ORTHO05D004317 7.9e-16 88.6 124 42.7
SGA_v2.0_scaffold7G04171 Striga asiatica HOM05D000029 ORTHO05D004317 7.9e-16 88.6 230 59.6
Oeu044818.1 Olea europaea HOM05D000029 ORTHO05D004317 1.3e-15 87.8 82 48.8
FAN13G0854 Fragaria x ananassa HOM05D000029 ORTHO05D004317 1.8e-15 87.4 239 57.3
VMungo1309G0045 Vigna mungo HOM05D000029 ORTHO05D004317 1.8e-15 87.4 94 48.9
Eucgr.K02774 Eucalyptus grandis HOM05D000029 ORTHO05D004317 3.0e-15 86.7 68 60.3
Eucgr.B00174 Eucalyptus grandis HOM05D000029 ORTHO05D004317 1.1e-14 84.7 245 58.4
Sed0026149 Sechium edule HOM05D000029 ORTHO05D004317 1.1e-14 84.7 234 58.5
Cpa.g.sc4.22 Carica papaya HOM05D000029 ORTHO05D004317 1.9e-14 84.0 100 49.0
A04p24590 Brassica napus HOM05D000029 ORTHO05D004317 4.3e-14 82.8 120 41.7
Carub.0004s1318 Capsella rubella HOM05D000029 ORTHO05D004317 4.3e-14 82.8 117 42.7
THA.LOC104801545 Tarenaya hassleriana HOM05D000029 ORTHO05D004317 5.7e-14 82.4 112 47.3
Aqoxy5G03652 Aquilegia oxysepala HOM05D000029 ORTHO05D004317 7.4e-14 82.0 259 52.5
Glyma.04G190400 Glycine max HOM05D000029 ORTHO05D004317 7.4e-14 82.0 169 55.0
Glyma.06G175100 Glycine max HOM05D000029 ORTHO05D004317 7.4e-14 82.0 106 47.2
Lj1g0006775 Lotus japonicus HOM05D000029 ORTHO05D004317 9.6e-14 81.6 108 50.0
Aa31LG5G5160 Aethionema arabicum HOM05D000029 ORTHO05D004317 1.3e-13 81.3 122 42.6
MSTRG.9700 Avicennia marina HOM05D000029 ORTHO05D004317 1.3e-13 81.3 267 52.8
CARHR125590 Cardamine hirsuta HOM05D000029 ORTHO05D004317 1.6e-13 80.9 115 45.2
A04p24580 Brassica napus HOM05D000029 ORTHO05D004317 2.8e-13 80.1 117 41.0
BraA04t17978Z Brassica rapa HOM05D000029 ORTHO05D004317 2.8e-13 80.1 117 41.0
Lalb_Chr08g0236871 Lupinus albus HOM05D000029 ORTHO05D004317 3.7e-13 79.7 258 44.2
C04p61470 Brassica napus HOM05D000029 ORTHO05D004317 6.3e-13 79.0 119 40.3
BolC4t27632H Brassica oleracea HOM05D000029 ORTHO05D004317 6.3e-13 79.0 119 40.3
HanXRQChr09g0272651 Helianthus annuus HOM05D000029 ORTHO05D004317 6.3e-13 79.0 102 47.1
BcaC02g07960 Brassica carinata HOM05D000029 ORTHO05D004317 8.2e-13 78.6 119 40.3
BcaB06g28572 Brassica carinata HOM05D000029 ORTHO05D004317 1.1e-12 78.2 118 40.7
Sc22g0004230 Simmondsia chinensis HOM05D000029 ORTHO05D004317 1.8e-12 77.4 99 43.4
Nitab4.5_0000510g0100 Nicotiana tabacum HOM05D000029 ORTHO05D004317 4.1e-12 76.3 172 64.5
ECA247G3208 Erigeron canadensis HOM05D000029 ORTHO05D004317 5.3e-12 75.9 115 41.7
arahy.Tifrunner.gnm1.ann1.CIB6XC Arachis hypogaea HOM05D000029 ORTHO05D004317 6.9e-12 75.5 237 43.9
unitig_62.g23228 Utricularia gibba HOM05D000029 ORTHO05D004317 6.9e-12 75.5 119 38.7
Migut.D02032 Erythranthe guttata HOM05D000029 ORTHO05D004317 9.0e-12 75.1 99 47.5
C04p61460 Brassica napus HOM05D000029 ORTHO05D004317 5.0e-10 69.3 123 40.7
BolC4t27631H Brassica oleracea HOM05D000029 ORTHO05D004317 5.0e-10 69.3 123 40.7
BraA02t06638Z Brassica rapa HOM05D000094 ORTHO05D002350 1.0e-07 61.6 118 34.7
A02p15770 Brassica napus HOM05D000094 ORTHO05D002350 5.1e-07 59.3 118 33.9
CDE09G0024 Ceratophyllum demersum HOM05D000029 ORTHO05D004317 2.5e-06 57.0 96 34.4
CARHR125570 Cardamine hirsuta HOM05D000029 ORTHO05D004317 3.3e-06 56.6 142 32.4
BolC2t08688H Brassica oleracea HOM05D000094 ORTHO05D002350 4.3e-06 56.2 118 33.9
C02p26220 Brassica napus HOM05D000094 ORTHO05D002350 5.7e-06 55.8 118 33.9
Haze_08004 Corylus avellana HOM05D000094 ORTHO05D002063 5.7e-06 55.8 99 36.4
MELO3C019939.2 Cucumis melo HOM05D000029 ORTHO05D006810 9.7e-06 55.1 128 33.6
CsaV3_6G004690 Cucumis sativus L. HOM05D000029 ORTHO05D006810 9.7e-06 55.1 128 33.6
Duzib151G0121 Durio zibethinus HOM05D000021 ORTHO05D000010 9.7e-06 55.1 114 37.7


User provided reference genes

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