Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16586 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 7.1e-30 133.7 88 100.0
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 7.9e-21 103.6 65 80.0
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.3e-20 102.8 61 77.0
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 4.8e-10 67.8 61 59.0
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.4e-09 65.5 61 57.4
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 5.3e-09 64.3 63 60.3
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 5.3e-09 64.3 57 63.2
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 6.9e-09 63.9 60 56.7
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 9.1e-09 63.5 60 58.3
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 9.1e-09 63.5 63 57.1
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 2.6e-08 62.0 65 55.4
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 5.9e-08 60.8 58 65.5
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.0e-07 60.1 58 56.9
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 1.3e-07 59.7 40 72.5
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.7e-07 59.3 63 52.4
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.7e-07 59.3 63 52.4
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.7e-07 59.3 63 52.4
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 1.7e-07 59.3 58 53.4
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 2.2e-07 58.9 57 59.6
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 2.9e-07 58.5 60 56.7
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 3.8e-07 58.2 65 55.4
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 3.8e-07 58.2 65 55.4
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 3.8e-07 58.2 58 53.4
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 5.0e-07 57.8 42 66.7
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 5.0e-07 57.8 61 52.5
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 5.0e-07 57.8 62 54.8
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 6.5e-07 57.4 63 50.8
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 8.5e-07 57.0 53 58.5
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 8.5e-07 57.0 57 56.1
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 8.5e-07 57.0 42 66.7
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 8.5e-07 57.0 42 66.7
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.4e-06 56.2 58 53.4
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.9e-06 55.8 62 51.6
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 1.9e-06 55.8 62 51.6
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 2.5e-06 55.5 62 53.2
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 2.5e-06 55.5 40 67.5
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 3.2e-06 55.1 53 54.7
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 3.2e-06 55.1 43 62.8
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 4.2e-06 54.7 58 51.7
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 4.2e-06 54.7 55 49.1
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.5e-06 54.3 60 53.3
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 7.2e-06 53.9 67 49.3
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 9.4e-06 53.5 64 51.6
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 9.4e-06 53.5 60 51.7
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 9.4e-06 53.5 40 65.0
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 9.4e-06 53.5 63 52.4


User provided reference genes

Program Settings