Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 0.0e+00 1813.1 909 100.0
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 0.0e+00 1369.4 917 78.6
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.7e-291 1006.1 982 59.7
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.3e-264 916.8 988 56.4
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 3.7e-238 828.9 976 52.4
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 1.6e-204 717.2 1058 47.4
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 4.2e-202 709.1 921 49.3
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 3.6e-201 706.1 972 47.9
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 2.2e-190 670.2 1064 44.5
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 1.6e-188 664.1 935 46.8
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 1.6e-188 664.1 921 46.5
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 3.3e-186 656.4 1109 43.4
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 2.1e-185 653.7 938 46.2
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 8.9e-184 648.3 959 47.0
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 3.4e-183 646.4 972 45.4
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 1.2e-177 627.9 949 45.2
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 2.1e-177 627.1 952 45.2
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 4.7e-177 625.9 946 45.2
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 7.5e-175 618.6 945 45.0
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 2.4e-173 613.6 820 48.2
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 1.6e-172 610.9 940 45.3
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 1.6e-172 610.9 955 45.1
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 2.1e-172 610.5 1131 40.3
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.9e-170 604.0 990 43.0
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 2.5e-170 603.6 937 45.6
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 1.6e-169 600.9 942 45.0
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 3.1e-168 596.7 927 45.1
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 4.0e-168 596.3 987 42.9
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 6.8e-168 595.5 1030 41.7
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 5.8e-167 592.4 946 44.8
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 5.8e-167 592.4 947 44.4
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 3.0e-163 580.1 1000 42.6
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 3.0e-163 580.1 1014 43.1
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 2.5e-162 577.0 954 43.3
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 1.6e-161 574.3 928 43.9
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 1.5e-159 567.8 1010 41.2
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 9.9e-159 565.1 585 58.1
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 3.2e-157 560.1 933 43.4
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 4.2e-157 559.7 979 42.0
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 7.1e-157 558.9 622 55.5
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 1.7e-155 554.3 924 43.3
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 5.1e-155 552.7 914 43.5
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 1.5e-154 551.2 935 43.9
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 4.3e-154 549.7 926 42.5
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 2.8e-153 547.0 641 53.2
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 4.8e-153 546.2 554 58.1
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 1.1e-152 545.0 910 43.3
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.4e-152 544.7 938 42.9
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 2.9e-150 537.0 733 48.4
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 1.9e-149 534.3 934 42.7
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 3.2e-149 533.5 523 59.5
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 3.2e-149 533.5 928 42.1
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 9.3e-149 531.9 570 56.5
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 1.3e-147 528.1 571 55.5
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 1.8e-147 527.7 856 44.4
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 2.3e-147 527.3 857 45.0
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 3.9e-147 526.6 1119 38.2
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 8.7e-147 525.4 740 47.3
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 1.6e-145 521.2 551 55.4
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 1.2e-143 515.0 724 46.0
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 2.6e-143 513.8 914 40.9
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 4.5e-143 513.1 642 49.2
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 1.4e-141 508.1 982 40.7
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.9e-141 507.7 934 41.1
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 5.5e-141 506.1 616 52.3
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 7.1e-141 505.8 918 40.0
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 1.2e-140 505.0 937 40.8
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 2.3e-139 500.7 945 41.6
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 1.1e-138 498.4 931 40.6
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 3.3e-138 496.9 517 55.3
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 4.3e-138 496.5 936 39.4
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 2.8e-137 493.8 935 39.7
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 5.3e-136 489.6 489 56.2
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 1.3e-134 485.0 488 58.0
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 3.2e-133 480.3 961 41.1
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 6.7e-131 472.6 920 40.2
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 3.3e-130 470.3 876 40.8
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 7.7e-127 459.1 910 39.0
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 1.3e-126 458.4 909 39.4
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 5.5e-125 453.0 547 51.2
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 4.3e-122 443.4 909 37.3
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 6.3e-121 439.5 901 37.7
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 1.5e-119 434.9 436 56.2
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 7.7e-119 432.6 716 42.5
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 7.7e-119 432.6 976 37.3
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 1.1e-117 428.7 642 45.8
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 5.5e-117 426.4 436 55.7
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 7.2e-117 426.0 898 37.8
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 1.6e-116 424.9 541 49.7
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 3.6e-116 423.7 467 52.0
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 6.1e-116 422.9 434 55.5
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 2.3e-115 421.0 467 51.8
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 2.3e-115 421.0 518 49.8
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 3.0e-115 420.6 472 51.5
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 1.1e-112 412.1 455 52.3
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 1.8e-112 411.4 927 36.1
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 4.1e-112 410.2 898 36.5
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 4.4e-106 390.2 912 36.5
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 9.7e-106 389.0 693 42.6
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 1.7e-105 388.3 930 36.6
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 1.0e-102 379.0 512 46.1
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 2.4e-96 357.8 850 38.5
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 3.4e-90 337.4 359 53.5
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 3.5e-79 300.8 628 40.0
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 7.5e-74 283.1 603 35.0
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 5.6e-69 266.9 332 50.3
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 3.6e-36 157.9 230 43.5
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 4.9e-33 147.5 110 69.1
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 6.0e-31 140.6 125 57.6
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 3.3e-29 134.8 259 33.6
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 1.1e-24 119.8 81 74.1
Dinv19923 Davidia involucrata HOM05D006304 ORTHO05D008584 1.3e-22 112.8 140 46.4
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 1.8e-19 102.4 125 52.0
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 2.6e-18 98.6 84 66.7
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 3.5e-15 88.2 132 46.2
Duzib084G1176 Durio zibethinus HOM05D006304 ORTHO05D008584 1.8e-11 75.9 77 54.5


User provided reference genes

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