Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 4.3e-190 667.9 360 100.0
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 3.7e-141 505.4 360 80.0
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.7e-122 443.4 362 71.0
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 3.6e-120 435.6 367 70.6
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.9e-113 413.3 369 68.0
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 2.5e-113 412.9 366 67.8
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 5.2e-111 405.2 364 66.5
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 2.4e-108 396.4 337 70.0
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 9.2e-108 394.4 368 66.0
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.5e-105 387.1 350 65.7
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.2e-104 384.0 365 64.1
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 4.0e-103 379.0 305 70.8
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 8.3e-101 371.3 367 63.5
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 3.2e-100 369.4 381 59.6
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 4.3e-97 359.0 368 61.4
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 3.1e-95 352.8 361 58.4
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 4.4e-94 349.0 363 60.1
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 5.8e-94 348.6 358 58.1
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 1.7e-93 347.1 356 60.7
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 1.4e-92 344.0 367 61.3
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 5.4e-92 342.0 365 58.9
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 5.4e-92 342.0 345 59.4
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 9.2e-92 341.3 359 60.2
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.6e-91 340.5 365 59.5
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 2.7e-91 339.7 328 61.9
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 1.7e-90 337.0 357 57.1
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 2.3e-90 336.7 358 58.4
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.6e-88 330.5 371 56.9
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.8e-88 329.7 357 57.1
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 3.6e-88 329.3 369 56.1
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 2.3e-87 326.6 363 55.9
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 1.5e-86 323.9 363 55.9
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 2.2e-85 320.1 349 59.6
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 3.2e-84 316.2 365 56.7
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 2.1e-83 313.5 364 54.4
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 7.8e-83 311.6 351 57.8
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 6.6e-82 308.5 360 53.6
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 6.6e-82 308.5 360 53.1
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 3.3e-81 306.2 364 56.0
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 4.3e-81 305.8 359 54.0
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.2e-80 304.3 355 53.5
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.2e-80 304.3 361 54.0
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 1.4e-79 300.8 363 53.7
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 1.8e-79 300.4 363 54.3
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 2.4e-79 300.1 365 54.2
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 2.4e-79 300.1 366 56.0
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 8.9e-79 298.1 352 56.0
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 2.0e-78 297.0 365 54.8
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 2.0e-78 297.0 370 53.2
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 2.2e-77 293.5 349 54.2
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 2.2e-77 293.5 365 52.3
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 2.9e-77 293.1 364 54.7
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 6.4e-77 292.0 303 57.8
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 6.4e-77 292.0 371 53.4
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 8.4e-77 291.6 354 55.4
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.1e-76 291.2 354 56.5
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.4e-76 290.8 375 51.7
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 3.2e-76 289.7 333 56.5
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 4.2e-76 289.3 353 54.7
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 5.4e-76 288.9 371 53.4
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 5.4e-76 288.9 361 52.9
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 9.3e-76 288.1 354 53.1
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.6e-75 287.3 351 55.0
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 2.1e-75 287.0 372 51.6
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 1.7e-74 283.9 364 52.5
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.7e-74 283.9 362 51.9
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 2.3e-74 283.5 369 52.0
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 2.3e-74 283.5 272 62.9
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 6.6e-74 282.0 358 52.0
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 8.7e-74 281.6 362 51.7
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.1e-73 281.2 366 51.6
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 2.5e-73 280.0 333 55.3
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 5.3e-71 272.3 321 51.4
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 1.5e-70 270.8 387 48.8
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 9.9e-70 268.1 367 52.0
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 4.9e-69 265.8 372 51.1
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 8.4e-69 265.0 390 47.4
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.1e-68 264.6 353 53.3
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 1.1e-68 264.6 357 47.6
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 1.1e-68 264.6 363 50.7
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 1.4e-68 264.2 347 54.5
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 1.9e-68 263.8 370 49.7
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 9.3e-68 261.5 362 50.0
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 2.1e-67 260.4 366 50.5
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 3.5e-67 259.6 347 51.0
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 6.6e-66 255.4 340 51.8
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 6.6e-66 255.4 372 50.8
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 8.7e-66 255.0 366 47.8
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 3.3e-65 253.1 358 49.2
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 9.6e-65 251.5 348 48.6
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.3e-64 251.1 357 48.5
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 2.8e-64 250.0 378 48.9
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 4.8e-64 249.2 367 50.4
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 6.2e-64 248.8 349 49.6
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.1e-63 248.1 374 48.9
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 1.4e-63 247.7 368 50.0
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 1.8e-63 247.3 357 48.5
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 9.0e-63 245.0 370 47.0
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 2.0e-62 243.8 325 49.5
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 3.4e-62 243.0 372 47.3
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 4.5e-62 242.7 400 46.2
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 2.9e-61 240.0 357 49.0
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 3.8e-61 239.6 367 46.3
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 1.4e-60 237.7 359 46.0
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.9e-60 237.3 368 45.9
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 5.5e-60 235.7 363 47.7
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 1.6e-59 234.2 284 53.5
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 7.9e-59 231.9 357 44.8
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 2.3e-58 230.3 385 46.2
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 1.1e-57 228.0 248 56.5
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 1.3e-56 224.6 318 50.0
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 2.4e-55 220.3 284 51.4
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 2.1e-51 207.2 332 44.3
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 4.6e-51 206.1 351 43.3
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 1.5e-49 201.1 347 41.8
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 5.7e-49 199.1 348 42.0
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 1.3e-48 198.0 334 42.2
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 3.7e-48 196.4 295 47.5
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 8.2e-48 195.3 295 46.4
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 2.0e-46 190.7 340 44.4
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 2.5e-44 183.7 288 46.2
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 9.3e-44 181.8 357 40.9
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 3.5e-43 179.9 253 47.4
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 3.0e-42 176.8 366 39.6
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 8.7e-42 175.3 368 39.9
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 2.8e-40 170.2 369 38.8
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 1.1e-39 168.3 372 40.6
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 1.1e-39 168.3 372 40.6
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 1.1e-39 168.3 372 40.6
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 1.4e-39 167.9 366 39.1
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 2.6e-38 163.7 372 40.1
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 3.8e-29 133.3 192 48.4
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 5.0e-21 106.3 410 28.3
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 1.0e-10 72.0 111 39.6
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 2.3e-10 70.9 91 37.4
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 4.0e-10 70.1 181 31.5
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 4.0e-10 70.1 87 43.7
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 5.2e-10 69.7 189 30.2
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 1.2e-09 68.6 200 30.5
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 1.5e-09 68.2 153 32.0
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 3.4e-09 67.0 115 34.8
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 4.4e-09 66.6 115 34.8
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 5.7e-09 66.2 109 33.9
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 5.7e-09 66.2 251 27.9
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 7.5e-09 65.9 89 39.3
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 9.8e-09 65.5 186 28.5
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 1.3e-08 65.1 189 29.1
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 1.7e-08 64.7 81 40.7
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 1.7e-08 64.7 188 31.4
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 2.2e-08 64.3 81 38.3
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 4.8e-08 63.2 109 35.8
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 4.8e-08 63.2 110 36.4
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 6.3e-08 62.8 109 35.8
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 6.3e-08 62.8 92 37.0
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 8.3e-08 62.4 161 29.2
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 1.1e-07 62.0 89 37.1
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 1.1e-07 62.0 178 30.3
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 1.4e-07 61.6 148 31.1
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 1.8e-07 61.2 109 36.7
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 1.8e-07 61.2 244 27.9
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 2.4e-07 60.8 85 35.3
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 2.4e-07 60.8 56 46.4
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 3.1e-07 60.5 36 80.6
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 3.1e-07 60.5 168 28.0
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 4.1e-07 60.1 76 36.8
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 4.1e-07 60.1 92 35.9
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 4.1e-07 60.1 228 26.3
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 5.4e-07 59.7 123 31.7
TAR375G0593 Trochodendron aralioides HOM05D005535 ORTHO05D006753 5.4e-07 59.7 66 57.6
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 7.0e-07 59.3 210 27.1
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 2.7e-06 57.4 246 28.5
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 2.7e-06 57.4 187 27.3
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 7.7e-06 55.8 198 30.8


User provided reference genes

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