Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16544 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 3.5e-39 164.5 82 100.0
Rhsim12G0155900 Rhododendron simsii HOM05D007106 ORTHO05D007770 2.5e-21 105.1 88 69.3
CSS0012235 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 2.9e-17 91.7 87 62.1
Actinidia35002 Actinidia chinensis HOM05D007106 ORTHO05D007770 3.8e-17 91.3 87 59.8
Actinidia19038 Actinidia chinensis HOM05D007106 ORTHO05D007770 4.9e-17 90.9 87 57.5
CSS0040002 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 6.5e-17 90.5 87 60.9
Actinidia37624 Actinidia chinensis HOM05D007106 ORTHO05D007770 4.6e-15 84.3 80 57.5
Hma1.2p1_1936F.1_g308220 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 1.8e-14 82.4 90 54.4
Hma1.2p1_2516F.1_g323695 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 1.8e-14 82.4 90 54.4
Actinidia04893 Actinidia chinensis HOM05D007106 ORTHO05D007770 4.3e-13 77.8 81 53.1
CSS0008414 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 8.2e-12 73.6 81 53.1
TAR374G1315 Trochodendron aralioides HOM05D007106 ORTHO05D007770 8.2e-12 73.6 87 50.6
COL.COLO4_08636 Corchorus olitorius HOM05D007106 ORTHO05D007770 1.8e-11 72.4 87 49.4
Nn3g17263 Nelumbo nucifera HOM05D007106 ORTHO05D007770 2.4e-11 72.0 90 51.1
GSVIVG01007993001 Vitis vinifera HOM05D007106 ORTHO05D007770 2.0e-10 68.9 80 50.0
MD06G1194400 Malus domestica HOM05D007106 ORTHO05D007770 3.4e-10 68.2 83 49.4
Gohir.D03G093700 Gossypium hirsutum HOM05D007106 ORTHO05D007770 5.8e-10 67.4 83 48.2
Gorai.003G097700 Gossypium raimondii HOM05D007106 ORTHO05D007770 5.8e-10 67.4 83 48.2
Prupe.5G194500 Prunus persica HOM05D007106 ORTHO05D007770 5.8e-10 67.4 86 45.3
Dinv16657 Davidia involucrata HOM05D007106 ORTHO05D007770 1.0e-09 66.6 87 42.5
Gohir.A03G067200 Gossypium hirsutum HOM05D007106 ORTHO05D007770 1.3e-09 66.2 83 48.2
Thecc.03G089800 Theobroma cacao HOM05D007106 ORTHO05D007770 1.3e-09 66.2 87 42.5
SalBow7G1857 Salvia bowleyana HOM05D007106 ORTHO05D007770 1.7e-09 65.9 84 47.6
Duzib205G0867 Durio zibethinus HOM05D007106 ORTHO05D007770 2.9e-09 65.1 84 45.2
MD14G1201500 Malus domestica HOM05D007106 ORTHO05D007770 2.9e-09 65.1 84 45.2
Oeu022764.1 Olea europaea HOM05D007106 ORTHO05D007770 2.9e-09 65.1 92 44.6
Dinv38719 Davidia involucrata HOM05D007106 ORTHO05D007770 3.8e-09 64.7 83 48.2
Cc11_g12880 Coffea canephora HOM05D007106 ORTHO05D007770 5.0e-09 64.3 81 44.4
Eucgr.K02478 Eucalyptus grandis HOM05D007106 ORTHO05D007770 5.0e-09 64.3 87 46.0
vmacro17537 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 1.1e-08 63.2 84 46.4
ClCG04G012220 Citrullus lanatus HOM05D007106 ORTHO05D007770 1.9e-08 62.4 78 47.4
Oeu047292.1 Olea europaea HOM05D007106 ORTHO05D007770 1.9e-08 62.4 92 43.5
Nitab4.5_0000121g0170 Nicotiana tabacum HOM05D007106 ORTHO05D007770 4.2e-08 61.2 83 39.8
Cc04_g16540 Coffea canephora HOM05D007106 ORTHO05D007770 5.5e-08 60.8 89 47.2
MELO3C001986.2 Cucumis melo HOM05D007106 ORTHO05D007770 5.5e-08 60.8 80 48.8
EL10Ac5g11028 Beta vulgaris HOM05D007106 ORTHO05D007770 7.1e-08 60.5 83 44.6
QL10p017125 Quercus lobata HOM05D007106 ORTHO05D007770 7.1e-08 60.5 83 47.0
Peaxi162Scf01256g00221 Petunia axillaris HOM05D007106 ORTHO05D007770 9.3e-08 60.1 81 43.2
RcHm_v2.0_Chr7g0181551 Rosa chinensis HOM05D007106 ORTHO05D007770 9.3e-08 60.1 81 42.0
Sed0016719 Sechium edule HOM05D007106 ORTHO05D007770 9.3e-08 60.1 79 48.1
CiPaw.11G045300 Carya illinoinensis HOM05D007106 ORTHO05D007770 1.2e-07 59.7 81 45.7
Solyc07g150120.1 Solanum lycopersicum HOM05D007106 ORTHO05D007770 1.2e-07 59.7 75 45.3
Cpa.g.sc423.1 Carica papaya HOM05D007106 ORTHO05D007770 1.6e-07 59.3 77 44.2
Cfa018934 Carpinus fangiana HOM05D007106 ORTHO05D007770 1.6e-07 59.3 83 47.0
Nitab4.5_0006000g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 1.6e-07 59.3 89 39.3
Sed0002642 Sechium edule HOM05D007106 ORTHO05D007770 1.6e-07 59.3 79 46.8
PGSC0003DMG400019989 Solanum tuberosum HOM05D007106 ORTHO05D007770 1.6e-07 59.3 74 45.9
FvH4_5g14840 Fragaria vesca HOM05D007106 ORTHO05D007770 2.1e-07 58.9 82 41.5
FAN18G2192 Fragaria x ananassa HOM05D007106 ORTHO05D007770 2.1e-07 58.9 82 41.5
Haze_12000 Corylus avellana HOM05D007106 ORTHO05D007770 3.5e-07 58.2 86 39.5
Sopen12g025630 Solanum pennellii HOM05D007106 ORTHO05D007770 3.5e-07 58.2 75 42.7
Nitab4.5_0008269g0020 Nicotiana tabacum HOM05D007106 ORTHO05D007770 6.1e-07 57.4 78 37.2
Eucgr.B00514 Eucalyptus grandis HOM05D007106 ORTHO05D007770 1.0e-06 56.6 81 43.2
CsaV3_1G005530 Cucumis sativus L. HOM05D007106 ORTHO05D007770 1.3e-06 56.2 80 47.5
Manes.06G091700 Manihot esculenta HOM05D007106 ORTHO05D007770 1.3e-06 56.2 85 44.7
FAN08G1525 Fragaria x ananassa HOM05D007106 ORTHO05D007770 2.3e-06 55.5 86 41.9
Gohir.D07G070600 Gossypium hirsutum HOM05D007106 ORTHO05D007770 2.3e-06 55.5 83 38.6
Gorai.001G074500 Gossypium raimondii HOM05D007106 ORTHO05D007770 2.3e-06 55.5 83 38.6
CANSAT80G2807 Cannabis sativa HOM05D007106 ORTHO05D007770 3.0e-06 55.1 86 43.0
Sopen06g004820 Solanum pennellii HOM05D007106 ORTHO05D007770 3.9e-06 54.7 74 44.6
Ciclev10022899m.g Citrus clementina HOM05D007106 ORTHO05D007770 6.7e-06 53.9 90 40.0
Glyma.05G026000 Glycine max HOM05D007106 ORTHO05D007770 6.7e-06 53.9 82 39.0
Lsat_1_v5_gn_5_19801 Lactuca sativa HOM05D007106 ORTHO05D007770 8.7e-06 53.5 77 44.2


User provided reference genes

Program Settings