Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 0.0e+00 1374.0 748 100.0
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 0.0e+00 1368.2 748 99.5
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 0.0e+00 1110.1 871 74.9
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 0.0e+00 1105.5 746 82.7
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 0.0e+00 1097.8 746 82.4
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 0.0e+00 1088.2 746 81.2
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.5e-301 1039.3 746 78.4
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 2.1e-300 1035.4 716 79.5
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 2.4e-296 1021.9 747 76.7
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 1.0e-294 1016.5 753 76.2
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 3.0e-294 1015.0 747 75.8
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 5.1e-294 1014.2 749 75.4
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 5.1e-294 1014.2 747 75.8
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 6.6e-294 1013.8 746 75.9
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 6.6e-294 1013.8 746 76.4
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 1.1e-291 1006.5 746 76.1
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 6.9e-291 1003.8 747 74.7
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 1.2e-290 1003.0 746 74.1
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.5e-290 1002.7 744 75.5
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 2.0e-290 1002.3 730 76.0
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 9.9e-290 1000.0 744 75.5
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.7e-289 999.2 744 75.4
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.2e-289 998.8 744 75.3
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 8.4e-289 996.9 747 74.7
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 2.4e-288 995.3 731 75.1
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 3.2e-288 995.0 748 74.6
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 7.1e-288 993.8 748 74.5
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 9.3e-288 993.4 744 75.0
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 2.1e-287 992.3 742 75.3
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.7e-286 989.2 746 74.3
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 5.1e-286 987.6 750 74.1
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.1e-285 986.5 750 73.5
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.1e-285 986.5 748 74.6
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 1.5e-285 986.1 746 74.5
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.3e-285 984.9 746 74.0
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 4.3e-285 984.6 746 74.3
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 4.3e-285 984.6 747 74.3
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 7.3e-285 983.8 753 73.4
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 2.1e-284 982.2 744 75.1
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 1.1e-283 979.9 749 72.9
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 1.4e-283 979.5 747 73.1
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 1.8e-283 979.2 727 74.8
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 4.0e-283 978.0 752 73.4
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 4.0e-283 978.0 727 74.8
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 6.9e-283 977.2 748 73.4
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.2e-282 976.5 750 73.1
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 4.5e-282 974.5 747 73.4
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 2.2e-281 972.2 746 73.9
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 8.4e-281 970.3 741 74.1
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 1.1e-280 969.9 728 75.1
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 1.4e-280 969.5 750 72.7
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 5.5e-280 967.6 742 73.3
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 9.3e-280 966.8 742 73.3
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.2e-279 966.5 742 73.6
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 6.0e-279 964.1 746 73.6
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 1.3e-278 963.0 750 71.9
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 2.1e-276 955.7 748 72.1
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 4.8e-276 954.5 748 72.2
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 1.4e-275 953.0 719 74.3
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 2.4e-275 952.2 750 72.8
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 4.0e-275 951.4 751 71.5
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 4.0e-275 951.4 760 71.8
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 3.4e-274 948.3 755 72.2
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 5.8e-274 947.6 753 70.9
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 1.0e-273 946.8 744 72.4
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 1.1e-272 943.3 751 70.8
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.4e-272 943.0 746 71.3
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 1.9e-272 942.6 750 70.8
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 3.2e-272 941.8 793 68.3
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 5.5e-272 941.0 750 70.7
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 9.3e-272 940.3 749 71.3
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 2.1e-271 939.1 749 73.0
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 7.9e-271 937.2 742 71.6
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 1.0e-270 936.8 751 71.6
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.3e-270 936.4 791 68.8
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 2.3e-270 935.6 793 67.8
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 5.7e-269 931.0 574 89.2
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 2.8e-268 928.7 746 70.9
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 3.7e-268 928.3 743 69.4
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 2.4e-267 925.6 751 69.9
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 2.4e-267 925.6 748 70.3
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 3.1e-267 925.2 749 70.2
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 9.0e-267 923.7 751 69.8
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.7e-265 919.5 794 68.3
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 3.8e-265 918.3 748 69.9
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 1.4e-264 916.4 716 72.3
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.9e-264 916.0 747 69.5
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 1.2e-263 913.3 746 69.7
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 4.6e-263 911.4 756 70.9
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.0e-262 910.2 750 69.1
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 1.4e-259 899.8 749 68.5
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 1.4e-259 899.8 749 68.5
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 2.6e-258 895.6 781 66.5
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.7e-257 892.9 746 68.9
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.9e-256 889.4 746 69.0
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 5.5e-256 887.9 1096 52.2
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 5.5e-256 887.9 611 80.0
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 1.6e-255 886.3 748 68.0
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 2.7e-255 885.6 612 80.9
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.8e-254 882.9 746 68.9
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 1.8e-254 882.9 700 71.4
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.1e-253 880.2 746 68.6
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.7e-252 875.2 780 66.3
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 2.2e-249 865.9 751 68.0
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.8e-246 856.3 780 65.3
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 8.2e-244 847.4 714 68.2
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.2e-244 847.4 801 63.8
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 1.7e-241 839.7 764 64.5
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 1.7e-233 813.1 745 63.4
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 1.9e-232 809.7 748 63.6
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.5e-232 809.3 729 63.5
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 2.0e-229 799.7 731 63.6
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 2.4e-219 766.1 704 64.5
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 5.6e-216 755.0 552 76.8
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 2.3e-209 733.0 746 58.6
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.4e-206 723.8 732 58.6
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 1.1e-203 714.1 731 57.5
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 5.6e-200 701.8 715 57.8
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 6.9e-166 588.6 424 79.0
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.5e-160 570.1 401 79.8
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 4.2e-155 552.7 744 46.6
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.3e-151 541.2 429 70.2
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 4.7e-130 469.5 575 50.6
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.3e-128 463.4 409 61.9
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 7.5e-112 409.1 422 60.7
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 2.0e-93 347.8 501 50.3
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 2.3e-89 334.3 507 49.1
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.7e-76 291.6 274 63.9
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 2.4e-70 271.2 771 29.8
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 1.5e-51 208.8 776 31.3
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 5.6e-51 206.8 561 33.7
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 1.1e-46 192.6 129 79.1
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 3.0e-44 184.5 127 78.0
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 4.8e-42 177.2 126 74.6
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.7e-39 168.7 248 46.4
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.7e-37 161.4 94 86.2
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 7.4e-27 126.7 93 78.5
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 2.3e-20 105.1 643 24.6
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.6e-19 101.7 71 74.6
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 4.1e-17 94.4 635 22.8
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 1.3e-15 89.4 109 55.0
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 1.9e-14 85.5 82 64.6
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 3.2e-14 84.7 768 22.9
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 5.2e-12 77.4 189 37.6
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 1.3e-10 72.8 82 59.8
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 8.2e-10 70.1 43 76.7
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 7.7e-08 63.5 63 65.1
Hund02405 Selenicereus undatus HOM05D004837 ORTHO05D005741 2.5e-06 58.5 28 96.4


User provided reference genes

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