Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 0.0e+00 2159.4 1103 100.0
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 0.0e+00 1794.6 1140 82.2
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1395.2 1145 66.7
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1335.1 1147 64.5
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 1099.3 1149 54.2
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 0.0e+00 1096.3 1152 54.8
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 0.0e+00 1094.3 1153 54.6
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 3.8e-311 1071.6 1147 54.8
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 5.7e-310 1067.8 1150 54.2
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 4.1e-308 1061.6 1156 53.8
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 3.5e-307 1058.5 1145 53.9
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 5.9e-307 1057.7 1145 54.3
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 7.7e-307 1057.4 1145 54.3
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.1e-305 1053.5 1146 53.9
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.5e-305 1053.1 1147 54.1
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 2.5e-305 1052.4 1159 53.1
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 3.2e-305 1052.0 1155 52.9
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 2.6e-302 1042.3 859 66.5
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 7.5e-302 1040.8 1132 54.4
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 3.7e-301 1038.5 1158 52.8
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 4.5e-299 1031.6 1145 52.8
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 5.9e-299 1031.2 1171 51.6
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 1.3e-298 1030.0 1148 52.8
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 1.7e-298 1029.6 1126 52.6
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 2.9e-298 1028.9 1142 53.9
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 3.8e-298 1028.5 1126 52.3
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 3.2e-297 1025.4 1143 52.5
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 3.0e-295 1018.8 1144 53.1
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 2.2e-293 1012.7 1138 51.8
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 1.4e-292 1010.0 1142 50.7
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 2.4e-292 1009.2 1142 50.5
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 2.3e-290 1002.7 1144 51.0
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.9e-290 1002.3 722 74.2
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 3.3e-289 998.8 1139 50.7
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 4.7e-288 995.0 1140 50.4
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 1.0e-287 993.8 1144 50.3
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 1.8e-287 993.0 1142 51.5
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 3.0e-287 992.3 1144 51.7
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 9.8e-286 987.3 979 57.1
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 1.7e-285 986.5 1155 51.5
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 2.9e-285 985.7 1146 49.8
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 6.4e-285 984.6 1149 49.7
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.1e-284 983.8 976 57.3
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 1.8e-284 983.0 969 57.9
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 3.2e-284 982.2 1146 50.6
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 4.1e-284 981.9 1151 50.8
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 7.0e-284 981.1 1144 51.3
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 1.3e-282 976.9 1144 50.0
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 2.3e-282 976.1 1232 48.5
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 2.3e-279 966.1 1154 49.7
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 4.0e-279 965.3 1218 48.0
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 8.9e-279 964.1 1122 50.5
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 4.4e-278 961.8 1154 49.7
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 5.8e-278 961.4 1147 50.0
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 1.4e-276 956.8 1143 49.5
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 8.6e-274 947.6 1143 49.6
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 1.9e-273 946.4 1151 50.0
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 3.4e-270 935.6 1148 48.7
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 9.8e-270 934.1 977 55.2
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 4.9e-269 931.8 1143 49.6
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 8.3e-269 931.0 1146 49.7
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 1.1e-268 930.6 1133 49.2
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 7.1e-268 927.9 1112 49.6
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 2.7e-267 926.0 1143 49.0
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 6.0e-267 924.9 1147 49.4
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 3.9e-266 922.2 1142 47.5
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 9.5e-265 917.5 975 53.3
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 3.1e-263 912.5 1061 51.4
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.7e-261 906.7 735 66.9
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 4.9e-261 905.2 889 57.0
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 1.6e-259 900.2 1171 47.5
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 7.8e-259 897.9 1152 47.5
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 1.7e-258 896.7 1139 46.8
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 3.9e-258 895.6 1155 47.0
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 1.6e-256 890.2 1140 47.9
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 2.4e-255 886.3 1111 48.1
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 5.8e-254 881.7 1143 45.8
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 3.2e-252 875.9 1144 46.7
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 9.6e-249 864.4 1161 45.8
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 1.6e-248 863.6 1097 49.7
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 2.2e-245 853.2 799 59.9
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 9.3e-244 847.8 1169 45.2
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 2.2e-237 826.6 1146 44.4
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 9.3e-236 821.2 1140 43.8
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 4.6e-235 818.9 1128 42.7
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.0e-234 817.8 1151 43.2
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 1.8e-234 817.0 814 57.1
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 3.9e-234 815.8 1137 43.4
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 3.3e-233 812.8 1139 43.5
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 2.1e-232 810.1 1142 43.7
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 2.1e-232 810.1 1141 43.6
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 2.8e-232 809.7 1139 43.7
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 4.8e-232 808.9 708 61.3
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 6.2e-232 808.5 1139 43.1
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 6.2e-232 808.5 1139 43.1
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.8e-231 807.0 1139 43.3
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 9.0e-231 804.7 1150 42.7
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.2e-230 804.3 708 61.3
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.3e-229 800.8 1139 42.7
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.4e-228 797.3 1185 42.9
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 1.6e-227 793.9 700 62.6
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.0e-226 791.2 1066 43.9
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 8.7e-226 788.1 1151 42.5
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 3.3e-225 786.2 1129 42.6
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.6e-224 783.9 1143 42.3
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 2.1e-224 783.5 1143 42.5
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 2.8e-224 783.1 1122 42.7
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 6.3e-224 781.9 1122 42.5
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 6.3e-224 781.9 1124 42.0
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 8.2e-224 781.6 1122 42.7
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 1.8e-223 780.4 1154 42.4
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 4.2e-220 769.2 1162 41.1
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 7.9e-219 765.0 1150 43.2
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.1e-212 744.6 547 70.9
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 3.6e-211 739.6 505 74.7
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 7.4e-209 731.9 1148 42.0
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 3.7e-208 729.6 875 50.2
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 1.8e-202 710.7 920 48.7
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.6e-201 706.8 448 78.8
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 8.0e-195 685.3 875 45.9
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 6.7e-194 682.2 618 61.2
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 8.8e-194 681.8 618 61.0
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 8.3e-184 648.7 656 55.9
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 1.1e-183 648.3 906 45.0
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 7.0e-183 645.6 1138 39.2
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 1.8e-178 630.9 665 55.6
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 2.0e-166 590.9 983 40.6
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 3.0e-165 587.0 927 42.5
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 3.8e-144 516.9 735 45.6
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 7.1e-135 486.1 268 91.8
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 7.1e-135 486.1 268 91.8
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 9.6e-132 475.7 799 40.7
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 1.1e-130 472.2 814 40.2
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.7e-110 404.4 454 51.1
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 2.6e-105 387.9 328 59.1
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.1e-93 347.1 206 83.5
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 2.0e-68 265.4 657 33.6
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 7.2e-63 246.9 578 31.1
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.3e-61 241.9 666 31.8
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 2.5e-55 221.9 142 81.0
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 2.1e-41 175.6 154 63.0
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 4.6e-41 174.5 786 25.4
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.7e-40 172.6 148 59.5
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 8.6e-40 170.2 91 91.2
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 2.2e-35 155.6 159 56.6
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 5.1e-32 144.4 91 74.7
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.2e-25 123.2 103 55.3
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 2.5e-23 115.5 380 30.0
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 9.0e-21 107.1 67 71.6
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 9.9e-12 77.0 85 50.6
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 1.9e-10 72.8 399 26.3
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 3.0e-08 65.5 216 27.8
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 3.9e-08 65.1 149 32.9
Mapoly0105s0058 Marchantia polymorpha HOM05D027721 ORTHO05D031191 9.6e-07 60.5 180 28.3


User provided reference genes

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