Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 1.2e-155 553.1 282 100.0
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 1.3e-128 463.4 305 81.6
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 2.1e-123 446.0 295 79.0
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 7.7e-110 401.0 300 72.3
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 7.7e-110 401.0 293 73.4
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 3.3e-105 385.6 293 67.6
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 9.7e-105 384.0 292 69.9
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 1.3e-101 373.6 304 68.4
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 1.5e-100 370.2 292 67.8
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 5.5e-100 368.2 285 69.5
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 2.1e-99 366.3 285 69.5
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 2.1e-99 366.3 283 69.6
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 2.1e-99 366.3 293 65.5
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 2.7e-99 365.9 292 67.5
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 3.6e-99 365.5 291 65.6
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 3.6e-99 365.5 296 66.9
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 6.1e-99 364.8 299 65.9
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 1.0e-98 364.0 297 67.0
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 1.0e-98 364.0 291 65.6
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 1.4e-98 363.6 293 67.2
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 1.8e-98 363.2 288 67.7
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 1.8e-98 363.2 263 72.6
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 1.5e-97 360.1 247 76.1
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 1.5e-97 360.1 288 68.4
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 1.5e-97 360.1 291 64.9
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 3.3e-97 359.0 290 65.9
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 3.3e-97 359.0 294 65.6
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 4.4e-97 358.6 264 71.6
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 6.3e-96 354.8 285 67.0
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 8.2e-96 354.4 294 65.6
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 8.2e-96 354.4 283 66.4
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 1.8e-95 353.2 241 74.3
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 4.1e-95 352.1 290 67.6
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 5.3e-95 351.7 294 66.0
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 1.2e-94 350.5 292 65.4
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 2.0e-94 349.7 297 64.3
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 4.5e-94 348.6 255 68.2
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 4.5e-94 348.6 267 68.9
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 7.7e-94 347.8 275 66.2
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 1.1e-92 344.0 277 67.1
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 1.5e-92 343.6 281 66.5
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 1.9e-92 343.2 262 69.5
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 1.9e-92 343.2 274 67.9
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 4.2e-92 342.0 294 64.6
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 7.2e-92 341.3 262 69.5
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 3.0e-90 335.9 289 62.3
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 3.0e-90 335.9 246 69.1
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 4.0e-90 335.5 287 62.0
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 5.2e-90 335.1 261 69.0
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 6.8e-90 334.7 295 62.0
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 2.0e-89 333.2 241 69.7
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 3.4e-89 332.4 252 67.5
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 9.8e-89 330.9 241 69.3
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 1.3e-88 330.5 299 60.5
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 1.3e-88 330.5 299 60.5
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 8.3e-88 327.8 274 64.2
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 8.3e-88 327.8 290 61.4
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 1.1e-87 327.4 260 61.9
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 1.4e-87 327.0 252 65.9
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 1.4e-87 327.0 289 62.3
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 1.8e-87 326.6 282 64.2
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 2.4e-87 326.2 265 66.8
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 2.7e-86 322.8 257 65.0
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 3.5e-86 322.4 289 64.4
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 2.9e-85 319.3 276 62.3
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 3.8e-85 318.9 262 63.4
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 1.1e-84 317.4 260 64.2
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 5.5e-84 315.1 271 62.4
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 1.2e-83 313.9 274 65.0
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 2.7e-83 312.8 278 61.9
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 4.7e-83 312.0 283 61.8
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 1.0e-82 310.8 280 60.0
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 1.4e-82 310.5 250 65.2
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 1.8e-82 310.1 275 60.4
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 3.0e-82 309.3 262 63.7
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 7.5e-81 304.7 272 62.1
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 9.8e-81 304.3 263 63.1
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 9.8e-81 304.3 225 69.8
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 2.8e-80 302.8 267 62.9
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 3.7e-80 302.4 254 64.6
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 4.9e-80 302.0 238 64.7
TWI18G0575 Tripterygium wilfordii HOM05D006923 ORTHO05D008697 6.3e-80 301.6 298 60.7
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 2.4e-79 299.7 246 64.2
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 5.4e-79 298.5 267 62.5
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 5.9e-78 295.0 240 64.2
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 5.9e-78 295.0 240 62.9
ATR0624G013 Amborella trichopoda HOM05D006923 ORTHO05D008697 4.2e-76 288.9 239 61.9
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 2.3e-74 283.1 241 61.8
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 4.0e-74 282.3 235 62.1
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 4.1e-71 272.3 200 70.5
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 7.8e-70 268.1 260 56.9
MELO3C012038.2 Cucumis melo HOM05D006923 ORTHO05D008697 4.3e-68 262.3 228 64.9
Medtr5g037050 Medicago truncatula HOM05D006923 ORTHO05D008697 2.3e-66 256.5 216 62.5
VMungo1215G1603 Vigna mungo HOM05D006923 ORTHO05D008697 1.5e-65 253.8 218 61.0
AUR62026532 Chenopodium quinoa HOM05D006923 ORTHO05D008697 3.4e-65 252.7 245 57.1
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 2.3e-58 229.9 278 51.8
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 1.9e-55 220.3 184 62.0
Pp3c3_23340 Physcomitrium patens HOM05D006923 ORTHO05D008697 2.4e-55 219.9 228 51.8
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 4.6e-54 215.7 226 51.8
CBR_g3926 Chara braunii HOM05D006923 ORTHO05D008697 6.4e-48 195.3 227 43.6
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 9.2e-47 191.4 143 66.4
MCO16G195 Micromonas commoda HOM05D006923 ORTHO05D008697 7.6e-41 171.8 236 41.1
Nitab4.5_0001908g0040 Nicotiana tabacum HOM05D006923 ORTHO05D008697 6.4e-40 168.7 233 46.8
Cre08.g382300 Chlamydomonas reinhardtii HOM05D006923 ORTHO05D008697 1.4e-34 151.0 228 37.3
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 7.1e-31 138.7 244 34.4
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 1.7e-29 134.0 87 72.4
Sed0022420 Sechium edule HOM05D006923 ORTHO05D008697 3.9e-29 132.9 219 41.1
MBI17_g35869_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 6.2e-19 99.0 97 55.7
SEGI_22816 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 6.2e-19 99.0 85 58.8
AagrBONN_evm.TU.Sc2ySwM_117.4092 Anthoceros agrestis HOM05D006923 ORTHO05D008697 2.9e-16 90.1 139 41.7
VMungo1215G3051 Vigna mungo HOM05D006923 ORTHO05D008697 3.5e-14 83.2 54 70.4
Hma1.2p1_0289F.1_g114510 Hydrangea macrophylla HOM05D006923 ORTHO05D008697 2.5e-12 77.0 62 64.5
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.8e-11 73.6 54 66.7
A07p27760 Brassica napus HOM05D006923 ORTHO05D024228 1.5e-09 67.8 60 58.3
BraA07t30415Z Brassica rapa HOM05D006923 ORTHO05D024228 1.5e-09 67.8 60 58.3
BraA08t33759Z Brassica rapa HOM05D020796 ORTHO05D024228 4.5e-09 66.2 60 56.7
SEGI_22360 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 5.9e-09 65.9 53 50.9
Rhsim12G0083500 Rhododendron simsii HOM05D002858 ORTHO05D001695 1.3e-08 64.7 152 38.2
Rhsim03G0260900 Rhododendron simsii HOM05D021265 ORTHO05D339689 1.1e-07 61.6 55 58.2
Rhsim06G0079000 Rhododendron simsii HOM05D021265 ORTHO05D338543 2.1e-06 57.4 50 56.0
C03p46150 Brassica napus HOM05D024156 ORTHO05D027668 7.9e-06 55.5 57 52.6


User provided reference genes

Program Settings