Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16147 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 5.8e-83 310.8 156 100.0
Rhsim12G0107100 Rhododendron simsii HOM05D001304 ORTHO05D008890 1.8e-31 139.8 92 81.5
Oeu020321.1 Olea europaea HOM05D001304 ORTHO05D008890 1.8e-20 103.2 91 60.4
Actinidia15135 Actinidia chinensis HOM05D001304 ORTHO05D008890 3.1e-20 102.4 91 65.9
Actinidia24567 Actinidia chinensis HOM05D001304 ORTHO05D008890 3.1e-20 102.4 91 64.8
MSTRG.7966 Avicennia marina HOM05D001304 ORTHO05D008890 3.1e-20 102.4 91 62.6
Cfa009288 Carpinus fangiana HOM05D001304 ORTHO05D008890 3.1e-20 102.4 91 69.2
Haze_12318 Corylus avellana HOM05D001304 ORTHO05D008890 9.1e-20 100.9 91 69.2
Dinv11009 Davidia involucrata HOM05D001304 ORTHO05D008890 2.0e-19 99.8 91 65.9
SGA_v2.0_scaffold484G52361 Striga asiatica HOM05D001304 ORTHO05D008890 5.9e-19 98.2 91 54.9
Ca_16494_v3 Cicer arietinum L. HOM05D001304 ORTHO05D008890 7.7e-19 97.8 91 59.3
FvH4_4g24830 Fragaria vesca HOM05D001304 ORTHO05D008890 7.7e-19 97.8 93 62.4
FAN07G1515 Fragaria x ananassa HOM05D001304 ORTHO05D008890 7.7e-19 97.8 93 62.4
FAN12G0763 Fragaria x ananassa HOM05D001304 ORTHO05D008890 7.7e-19 97.8 93 62.4
FAN22G1346 Fragaria x ananassa HOM05D001304 ORTHO05D008890 7.7e-19 97.8 93 62.4
Ciclev10032669m.g Citrus clementina HOM05D001304 ORTHO05D008890 1.0e-18 97.4 87 66.7
MD13G1108600 Malus domestica HOM05D001304 ORTHO05D008890 1.3e-18 97.1 93 58.1
Atru.chr11.2216 Acer truncatum HOM05D001304 ORTHO05D008890 2.9e-18 95.9 90 62.2
EL10As2g23248 Beta vulgaris HOM05D001304 ORTHO05D008890 2.9e-18 95.9 91 59.3
Glyma.11G246700 Glycine max HOM05D001304 ORTHO05D008890 3.8e-18 95.5 97 59.8
VMungo1383G0240 Vigna mungo HOM05D001304 ORTHO05D008890 5.0e-18 95.1 93 58.1
FAN17G2678 Fragaria x ananassa HOM05D001304 ORTHO05D008890 6.5e-18 94.7 93 61.3
Manes.12G017100 Manihot esculenta HOM05D001304 ORTHO05D008890 6.5e-18 94.7 91 58.2
Prupe.1G237600 Prunus persica HOM05D001304 ORTHO05D008890 6.5e-18 94.7 93 59.1
RcHm_v2.0_Chr4g0431911 Rosa chinensis HOM05D001304 ORTHO05D008890 8.5e-18 94.4 93 59.1
COL.COLO4_23565 Corchorus olitorius HOM05D001304 ORTHO05D008890 1.1e-17 94.0 94 60.6
Nitab4.5_0000041g0390 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.1e-17 94.0 91 60.4
PSO063G7645 Papaver somniferum HOM05D001304 ORTHO05D008890 1.4e-17 93.6 92 57.6
Migut.K00680 Erythranthe guttata HOM05D001304 ORTHO05D008890 1.9e-17 93.2 97 53.6
Cpa.g.c30628.2 Carica papaya HOM05D001304 ORTHO05D008890 2.5e-17 92.8 91 61.5
AUR62005553 Chenopodium quinoa HOM05D001304 ORTHO05D008890 2.5e-17 92.8 93 57.0
TAR622G1249 Trochodendron aralioides HOM05D001304 ORTHO05D008890 2.5e-17 92.8 91 60.4
PSO782G0777 Papaver somniferum HOM05D001304 ORTHO05D008890 4.2e-17 92.0 92 56.5
Phvul.001G258300 Phaseolus vulgaris HOM05D001304 ORTHO05D008890 4.2e-17 92.0 89 58.4
SalBow2G0118 Salvia bowleyana HOM05D001304 ORTHO05D008890 4.2e-17 92.0 91 50.5
CsaV3_2G025190 Cucumis sativus L. HOM05D001304 ORTHO05D008890 7.2e-17 91.3 91 60.4
TWI36G0586 Tripterygium wilfordii HOM05D001304 ORTHO05D008890 7.2e-17 91.3 91 60.4
AUR62024180 Chenopodium quinoa HOM05D001304 ORTHO05D008890 9.4e-17 90.9 93 54.8
PGR119G0865 Punica granatum HOM05D001304 ORTHO05D008890 9.4e-17 90.9 94 60.6
ClCG08G017440 Citrullus lanatus HOM05D001304 ORTHO05D008890 1.2e-16 90.5 91 61.5
Cc11_g16390 Coffea canephora HOM05D001304 ORTHO05D008890 2.7e-16 89.4 91 54.9
arahy.Tifrunner.gnm1.ann1.VHC2JK Arachis hypogaea HOM05D001304 ORTHO05D008890 3.6e-16 89.0 97 56.7
MELO3C010716.2 Cucumis melo HOM05D001304 ORTHO05D008890 3.6e-16 89.0 91 59.3
AL2G26400 Arabidopsis lyrata HOM05D001304 ORTHO05D008890 4.7e-16 88.6 91 58.2
AT1G67700 Arabidopsis thaliana HOM05D001304 ORTHO05D008890 4.7e-16 88.6 91 58.2
BcaC08g46187 Brassica carinata HOM05D001304 ORTHO05D008890 4.7e-16 88.6 91 57.1
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 4.7e-16 88.6 91 57.1
Gohir.D04G181000 Gossypium hirsutum HOM05D001304 ORTHO05D008890 4.7e-16 88.6 97 56.7
Carub.0002s1413 Capsella rubella HOM05D001304 ORTHO05D008890 6.1e-16 88.2 91 58.2
Hma1.2p1_0079F.1_g041530 Hydrangea macrophylla HOM05D001304 ORTHO05D008890 6.1e-16 88.2 91 54.9
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 8.0e-16 87.8 91 57.1
CANSAT01G0179 Cannabis sativa HOM05D001304 ORTHO05D008890 8.0e-16 87.8 96 55.2
Sp5g22690 Schrenkiella parvula HOM05D001304 ORTHO05D008890 1.4e-15 87.0 93 58.1
Hund06057 Selenicereus undatus HOM05D001304 ORTHO05D008890 1.8e-15 86.7 95 52.6
Thhalv10019020m.g Eutrema salsugineum HOM05D001304 ORTHO05D008890 3.9e-15 85.5 91 58.2
BcaB03g15175 Brassica carinata HOM05D001304 ORTHO05D008890 6.7e-15 84.7 91 60.4
A07p32450 Brassica napus HOM05D001304 ORTHO05D008890 6.7e-15 84.7 91 54.9
BraA07t30869Z Brassica rapa HOM05D001304 ORTHO05D008890 6.7e-15 84.7 91 54.9
Potri.010G053600 Populus trichocarpa HOM05D001304 ORTHO05D008890 6.7e-15 84.7 97 57.7
BcaC08g46045 Brassica carinata HOM05D001304 ORTHO05D008890 8.8e-15 84.3 93 55.9
C06p38480 Brassica napus HOM05D001304 ORTHO05D008890 8.8e-15 84.3 93 55.9
Nitab4.5_0001318g0090 Nicotiana tabacum HOM05D001304 ORTHO05D008890 8.8e-15 84.3 88 59.1
Aqoxy5G03572 Aquilegia oxysepala HOM05D001304 ORTHO05D008890 1.5e-14 83.6 93 57.0
Sopen05g009420 Solanum pennellii HOM05D001304 ORTHO05D008890 1.5e-14 83.6 91 56.0
Solyc05g014310.3 Solanum lycopersicum HOM05D001304 ORTHO05D008890 2.0e-14 83.2 91 56.0
PGSC0003DMG400017453 Solanum tuberosum HOM05D001304 ORTHO05D008890 2.0e-14 83.2 91 53.8
Eucgr.H04690 Eucalyptus grandis HOM05D001304 ORTHO05D008890 3.3e-14 82.4 93 51.6
unitig_8.g2912 Utricularia gibba HOM05D000468 ORTHO05D008890 4.4e-14 82.0 91 51.6
Sabra10G0017000 Salix brachista HOM05D001304 ORTHO05D008890 7.4e-14 81.3 97 52.6
Sc04g0009800 Simmondsia chinensis HOM05D001304 ORTHO05D008890 7.4e-14 81.3 92 53.3
CARHR060290 Cardamine hirsuta HOM05D001304 ORTHO05D008890 2.8e-13 79.3 93 54.8
Peaxi162Scf00128g00729 Petunia axillaris HOM05D001304 ORTHO05D008890 4.8e-13 78.6 94 55.3
Aa31LG4G12100 Aethionema arabicum HOM05D001304 ORTHO05D008890 8.2e-13 77.8 93 51.6
Sed0004969 Sechium edule HOM05D001304 ORTHO05D008890 8.2e-13 77.8 91 52.7
THA.LOC104825532 Tarenaya hassleriana HOM05D001304 ORTHO05D008890 1.1e-12 77.4 92 53.3
Ah.02g130500 Amaranthus hybridus HOM05D001304 ORTHO05D008890 2.4e-12 76.3 77 54.5
Lsat_1_v5_gn_8_150960 Lactuca sativa HOM05D001304 ORTHO05D008890 9.1e-12 74.3 92 47.8
CDE02G1129 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 1.2e-11 73.9 91 47.3
arahy.Tifrunner.gnm1.ann1.Q18UTF Arachis hypogaea HOM05D001304 ORTHO05D008890 2.0e-11 73.2 97 51.5
ATR0824G252 Amborella trichopoda HOM05D001304 ORTHO05D008890 1.9e-09 66.6 104 41.3
CiPaw.05G174500 Carya illinoinensis HOM05D001304 ORTHO05D008890 9.4e-09 64.3 40 72.5
CDE09G0600 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 1.6e-08 63.5 91 45.1
CDE04G1632 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 6.1e-08 61.6 94 41.5
Gohir.A04G137800 Gossypium hirsutum HOM05D001304 ORTHO05D008890 6.1e-08 61.6 98 48.0
Lj6C819T3 Lonicera japonica HOM05D001304 ORTHO05D008890 2.3e-07 59.7 95 42.1
ECA233G5962 Erigeron canadensis HOM05D000468 ORTHO05D000548 1.2e-06 57.4 70 48.6
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 3.3e-06 55.8 88 40.9
Gorai.012G174200 Gossypium raimondii HOM05D001304 ORTHO05D008890 5.7e-06 55.1 98 43.9
Lj6g0017703 Lotus japonicus HOM05D001304 ORTHO05D008890 5.7e-06 55.1 91 40.7


User provided reference genes

Program Settings