Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 0.0e+00 1371.3 680 100.0
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.5e-255 886.3 525 83.8
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.1e-254 882.5 525 83.6
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 6.1e-246 854.4 523 82.6
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 2.1e-238 829.3 525 79.6
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 8.6e-232 807.4 534 75.1
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 7.3e-215 751.1 510 73.3
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 9.5e-215 750.7 528 70.6
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 1.6e-214 750.0 515 72.8
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 6.2e-214 748.0 528 69.7
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 4.0e-213 745.3 525 71.2
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 1.7e-211 740.0 525 70.3
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 8.3e-211 737.6 536 68.7
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 1.1e-210 737.3 525 69.9
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 3.2e-210 735.7 525 68.8
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 4.1e-210 735.3 530 69.8
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 1.5e-207 726.9 528 68.0
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 1.8e-205 719.9 529 68.6
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 2.4e-205 719.5 511 69.9
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 1.2e-204 717.2 595 63.9
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.9e-199 699.9 527 66.4
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 4.3e-199 698.7 531 67.8
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 4.0e-197 692.2 528 66.5
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 3.4e-196 689.1 528 65.3
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 3.8e-195 685.6 533 65.5
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 1.4e-194 683.7 528 65.9
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 3.2e-194 682.6 532 65.4
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 7.1e-194 681.4 591 60.4
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 1.6e-193 680.2 525 64.6
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 3.5e-193 679.1 528 65.2
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 7.8e-193 677.9 524 65.1
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 5.1e-192 675.2 526 65.2
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 8.7e-192 674.5 531 65.7
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 3.6e-190 669.1 538 63.6
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 1.8e-189 666.8 538 63.4
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 3.1e-189 666.0 525 64.2
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 4.0e-189 665.6 529 63.3
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 1.5e-188 663.7 529 63.3
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 3.4e-188 662.5 532 64.1
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 1.1e-186 657.5 528 64.0
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 1.9e-186 656.8 530 63.8
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 3.2e-186 656.0 528 63.6
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.1e-185 653.3 529 63.3
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 2.7e-185 652.9 530 64.0
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 1.8e-184 650.2 530 62.8
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 5.1e-184 648.7 528 62.7
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 8.7e-184 647.9 561 60.2
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.9e-183 646.7 527 62.0
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.5e-183 646.4 522 63.8
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.3e-182 644.0 527 61.7
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.3e-182 644.0 528 62.3
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.6e-182 643.7 521 63.7
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 8.1e-182 641.3 547 60.7
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 1.4e-181 640.6 473 68.1
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.8e-181 640.2 512 64.5
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 1.5e-180 637.1 528 62.5
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 3.4e-180 636.0 498 63.7
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 3.4e-180 636.0 528 61.2
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 8.4e-179 631.3 531 60.5
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 8.4e-179 631.3 534 61.0
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 1.9e-178 630.2 535 61.9
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 2.7e-177 626.3 531 60.5
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 2.7e-177 626.3 532 60.5
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 3.5e-177 625.9 532 60.5
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 6.0e-177 625.2 533 61.7
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.8e-176 623.6 511 62.6
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 8.7e-176 621.3 528 60.6
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 8.7e-176 621.3 528 59.3
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 2.5e-175 619.8 535 60.0
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 5.6e-175 618.6 528 61.0
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 9.6e-175 617.8 521 62.4
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 4.8e-174 615.5 534 58.4
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 8.2e-174 614.8 531 60.1
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 1.4e-173 614.0 528 59.8
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 1.4e-173 614.0 535 59.8
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 1.4e-173 614.0 531 59.3
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 3.1e-173 612.8 529 59.7
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 1.5e-172 610.5 533 59.7
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 3.4e-172 609.4 530 58.1
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 3.4e-172 609.4 527 58.8
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 5.8e-172 608.6 525 59.0
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 7.6e-172 608.2 527 58.6
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 3.8e-171 605.9 526 59.3
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 6.5e-171 605.1 527 58.3
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 1.1e-170 604.4 527 58.3
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 1.9e-170 603.6 527 58.8
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 1.9e-170 603.6 530 58.9
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 5.5e-170 602.1 530 58.5
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 7.1e-170 601.7 538 59.7
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 2.5e-167 593.2 543 57.5
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 2.8e-166 589.7 566 55.7
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 6.3e-166 588.6 528 58.5
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 1.5e-164 583.9 532 57.9
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 3.4e-164 582.8 592 53.5
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 2.5e-159 566.6 537 55.1
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.3e-158 564.3 465 61.7
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 4.4e-151 539.3 490 59.4
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.1e-149 534.6 528 54.4
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 5.0e-147 525.8 524 52.7
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.8e-144 517.3 543 50.8
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.8e-144 517.3 543 50.8
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.1e-143 514.6 539 51.0
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 2.0e-143 513.8 527 52.2
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 3.2e-138 496.5 580 49.0
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 7.5e-127 458.8 535 47.7
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 9.8e-119 431.8 532 46.4
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 4.1e-117 426.4 543 43.3
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 6.6e-115 419.1 557 42.2
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.2e-111 408.3 322 61.8
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 2.1e-105 387.5 435 49.9
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 6.2e-105 386.0 507 42.4
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.4e-104 384.8 314 67.2
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 3.7e-102 376.7 313 58.5
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.1e-97 360.9 313 63.9
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 2.8e-89 334.0 387 45.0
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 2.7e-68 264.2 706 29.7
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 4.6e-68 263.5 274 51.8
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 6.7e-59 233.0 130 84.6
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 1.9e-53 214.9 574 29.6
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 1.9e-53 214.9 537 29.8
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 7.1e-53 213.0 213 51.2
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 3.1e-48 197.6 166 62.7
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 5.5e-45 186.8 143 65.0
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 6.7e-43 179.9 170 52.4
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.3e-41 175.6 231 46.8
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 2.9e-38 164.5 162 51.9
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 1.9e-37 161.8 288 34.4
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 1.4e-29 135.6 166 47.6
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.2e-29 134.0 301 31.6
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.6e-28 131.0 150 48.7
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.8e-25 121.3 95 64.2
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 2.8e-25 121.3 149 45.0
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 4.8e-25 120.6 124 47.6
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 1.5e-21 109.0 81 65.4
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 7.2e-21 106.7 123 48.8
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 8.3e-17 93.2 172 37.2
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 3.1e-16 91.3 101 45.5
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 2.5e-13 81.6 65 60.0
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 7.5e-10 70.1 54 61.1
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 9.8e-10 69.7 61 55.7
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 7.7e-07 60.1 43 62.8
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 2.9e-06 58.2 34 70.6
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 6.6e-06 57.0 51 56.9


User provided reference genes

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