Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 3.2e-184 648.3 332 100.0
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 1.9e-136 489.6 327 80.7
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 9.6e-136 487.3 327 80.4
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 2.7e-106 389.4 274 75.2
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 2.7e-106 389.4 351 64.7
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 3.6e-106 389.0 334 66.5
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 4.3e-104 382.1 278 71.6
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 4.8e-103 378.6 331 63.1
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 6.3e-103 378.3 327 67.6
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 5.3e-102 375.2 276 72.1
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.5e-101 373.6 283 71.7
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 2.6e-101 372.9 328 64.6
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 4.5e-101 372.1 325 64.3
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 1.0e-100 370.9 329 63.2
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 1.0e-100 370.9 304 67.4
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 2.2e-100 369.8 272 71.7
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 2.2e-100 369.8 282 69.9
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 2.9e-100 369.4 275 70.9
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 1.4e-99 367.1 274 69.7
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 4.2e-99 365.5 309 64.4
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 2.1e-98 363.2 313 64.5
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 2.7e-98 362.8 265 71.3
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 2.7e-98 362.8 263 73.0
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 3.6e-98 362.5 272 71.0
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 3.6e-98 362.5 310 64.2
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 4.7e-98 362.1 272 69.5
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 6.1e-98 361.7 272 69.1
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 6.1e-98 361.7 275 70.2
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 1.4e-97 360.5 313 63.3
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 1.4e-97 360.5 274 69.7
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.8e-97 360.1 271 70.8
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.8e-97 360.1 280 68.9
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 1.8e-97 360.1 276 71.0
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 6.7e-97 358.2 306 63.7
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 3.3e-96 355.9 271 69.4
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 3.3e-96 355.9 334 60.5
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 5.7e-96 355.1 277 67.9
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 9.7e-96 354.4 285 66.0
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 1.3e-95 354.0 327 61.8
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 6.3e-95 351.7 295 65.8
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 6.3e-95 351.7 297 64.6
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 6.3e-95 351.7 336 59.5
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 6.3e-95 351.7 327 60.9
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 8.2e-95 351.3 265 69.1
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 2.4e-94 349.7 295 65.4
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 3.1e-94 349.4 274 66.8
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 5.3e-94 348.6 294 65.0
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 9.1e-94 347.8 269 68.0
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 1.5e-93 347.1 359 57.7
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 2.6e-93 346.3 269 67.7
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 3.4e-93 345.9 325 61.2
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 3.4e-93 345.9 294 63.6
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 4.5e-93 345.5 268 66.0
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 1.0e-92 344.4 255 68.6
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.0e-92 344.4 268 68.3
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 1.0e-92 344.4 260 69.2
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 1.3e-92 344.0 323 60.4
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 1.3e-92 344.0 268 65.7
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.7e-92 343.6 280 63.6
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 1.7e-92 343.6 283 64.7
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 3.8e-92 342.4 276 67.0
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 3.8e-92 342.4 328 59.8
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 3.8e-92 342.4 268 66.8
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 6.5e-92 341.7 296 63.2
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 1.9e-91 340.1 298 61.4
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 2.5e-91 339.7 244 70.9
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 2.5e-91 339.7 268 64.9
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 7.2e-91 338.2 322 56.2
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 9.4e-91 337.8 266 68.0
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 1.2e-90 337.4 307 61.2
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 1.6e-90 337.0 322 55.9
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 1.6e-90 337.0 279 63.1
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 3.6e-90 335.9 268 63.4
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 3.6e-90 335.9 276 65.6
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 1.4e-89 334.0 274 66.1
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 3.0e-89 332.8 275 64.0
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 3.9e-89 332.4 326 56.7
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 1.1e-88 330.9 277 64.3
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 1.1e-88 330.9 244 68.9
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 1.5e-88 330.5 298 60.7
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 3.3e-88 329.3 273 65.6
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 9.7e-88 327.8 277 61.7
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 4.8e-87 325.5 276 63.4
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 4.8e-87 325.5 307 59.0
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 8.2e-87 324.7 300 59.7
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 1.2e-85 320.9 325 55.1
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 3.5e-85 319.3 239 67.8
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 4.2e-83 312.4 245 65.7
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 7.2e-83 311.6 332 55.4
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 1.2e-82 310.8 312 57.4
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 3.6e-82 309.3 235 68.9
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 8.0e-82 308.1 266 61.3
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 3.0e-81 306.2 250 66.0
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 2.6e-80 303.1 204 76.5
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 2.2e-79 300.1 310 56.1
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 8.2e-79 298.1 207 75.8
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 1.6e-77 293.9 238 63.9
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 1.6e-77 293.9 323 52.0
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 2.5e-75 286.6 207 69.1
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 6.1e-74 282.0 245 58.8
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 1.4e-73 280.8 265 57.4
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 5.7e-72 275.4 270 52.6
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 4.8e-71 272.3 206 68.4
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.8e-70 270.4 268 54.5
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.7e-68 263.8 204 69.6
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 1.1e-67 261.2 277 51.3
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 9.2e-62 241.5 330 45.8
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 9.5e-59 231.5 140 77.1
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 2.6e-48 196.8 148 69.6
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 2.6e-40 170.2 308 37.3
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 6.4e-39 165.6 236 43.6
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 6.0e-37 159.1 204 44.6
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 9.9e-32 141.7 197 46.7
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 3.8e-31 139.8 86 79.1
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 4.6e-29 132.9 136 55.1
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 1.6e-21 107.8 82 62.2
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 1.3e-20 104.8 69 73.9
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 1.9e-19 100.9 68 66.2
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 5.6e-19 99.4 112 50.9
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 9.6e-19 98.6 56 83.9
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 8.1e-18 95.5 136 44.9
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 2.4e-17 94.0 64 70.3
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 7.6e-16 89.0 63 63.5
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 1.4e-14 84.7 178 37.1
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 3.2e-14 83.6 51 76.5
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 1.6e-13 81.3 63 61.9
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 2.1e-13 80.9 49 77.6
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 1.3e-12 78.2 169 34.9
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 3.9e-12 76.6 53 67.9
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 2.5e-11 73.9 47 76.6
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 3.4e-08 63.5 94 44.7
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 5.8e-08 62.8 43 67.4
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 2.2e-07 60.8 82 43.9


User provided reference genes

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