Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 0.0e+00 1629.8 927 100.0
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 5.2e-288 994.6 883 72.3
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 4.6e-188 662.5 849 51.5
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 1.4e-176 624.4 807 50.9
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.4e-160 570.5 692 58.2
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 3.8e-158 563.1 812 48.2
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 2.0e-151 540.8 675 54.2
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 4.7e-148 529.6 792 47.1
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 8.0e-148 528.9 796 45.7
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 3.1e-123 447.2 794 48.7
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 2.6e-122 444.1 811 41.4
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 1.2e-116 425.2 814 42.0
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 9.0e-115 419.1 802 40.6
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 3.8e-113 413.7 822 44.2
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.1e-109 402.1 812 44.7
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.3e-109 400.6 821 40.0
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 1.2e-106 392.1 812 45.7
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 1.9e-104 384.8 795 45.5
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.2e-104 383.6 469 52.7
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 1.2e-103 382.1 794 39.3
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.0e-102 377.5 800 39.8
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 7.4e-101 372.9 794 41.2
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 3.1e-99 367.5 799 38.0
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 5.3e-99 366.7 769 39.5
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 9.0e-99 365.9 815 37.3
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 3.4e-98 364.0 777 41.6
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 2.2e-97 361.3 794 43.8
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 2.9e-97 360.9 791 38.6
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 4.9e-97 360.1 806 41.3
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 4.2e-96 357.1 807 36.9
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.3e-96 355.9 795 39.0
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 2.1e-95 354.8 911 34.9
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.1e-95 354.8 799 38.8
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 1.0e-94 352.4 784 39.3
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 8.7e-94 349.4 803 37.7
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 2.5e-93 347.8 808 42.7
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 1.3e-92 345.5 809 37.0
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 2.8e-92 344.4 840 41.7
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-91 341.7 791 37.3
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 5.3e-91 340.1 829 41.6
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 1.2e-90 339.0 827 37.5
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 2.0e-90 338.2 806 44.7
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.0e-90 338.2 807 37.1
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 1.0e-89 335.9 787 42.2
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.7e-89 335.1 792 41.0
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.2e-89 334.7 794 37.7
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.2e-89 334.7 809 36.3
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.8e-89 334.0 820 41.6
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 3.8e-89 334.0 802 36.2
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 4.9e-89 333.6 792 40.4
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 1.9e-88 331.6 816 43.9
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.2e-88 330.5 794 35.6
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 2.7e-87 327.8 800 42.4
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 2.7e-87 327.8 821 40.6
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 2.7e-87 327.8 814 36.7
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 6.0e-87 326.6 801 35.8
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 6.0e-87 326.6 806 35.6
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 7.9e-87 326.2 806 35.6
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.3e-86 324.7 830 42.3
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 5.1e-86 323.6 844 41.2
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 6.7e-86 323.2 802 39.7
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.9e-85 321.6 775 35.2
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 3.3e-85 320.9 817 41.5
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 3.3e-85 320.9 790 35.2
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 9.7e-85 319.3 783 42.8
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 9.7e-85 319.3 809 35.5
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 2.2e-84 318.2 799 35.9
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-83 315.5 794 39.4
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 1.8e-83 315.1 806 40.7
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 5.3e-83 313.5 798 39.7
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.0e-82 311.6 790 38.7
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 4.5e-82 310.5 807 41.8
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 8.5e-81 306.2 799 35.8
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.4e-80 305.4 811 39.7
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 1.4e-80 305.4 786 41.7
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 4.2e-80 303.9 792 40.8
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 7.2e-80 303.1 442 51.1
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 1.2e-79 302.4 816 34.8
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 4.6e-79 300.4 808 37.0
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 6.1e-79 300.1 785 35.9
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 7.9e-79 299.7 797 34.6
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.9e-79 299.7 791 35.3
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 1.5e-77 295.4 567 49.6
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 9.7e-77 292.7 774 41.6
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.7e-76 292.0 779 35.4
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.8e-76 291.2 520 40.6
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 2.8e-76 291.2 801 37.6
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 1.1e-75 289.3 517 53.0
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 3.4e-74 284.3 561 48.5
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 4.5e-74 283.9 794 34.0
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 7.7e-74 283.1 790 40.8
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 2.2e-73 281.6 785 40.0
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 7.2e-72 276.6 767 34.2
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 1.4e-70 272.3 793 32.8
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 5.1e-70 270.4 811 32.8
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 1.1e-69 269.2 791 40.2
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 1.3e-68 265.8 803 32.8
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.2e-68 265.0 913 30.7
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 2.8e-68 264.6 576 44.3
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.2e-66 259.2 782 33.1
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 4.5e-66 257.3 642 40.3
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 4.5e-66 257.3 794 33.5
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 7.7e-66 256.5 695 37.7
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.3e-65 255.8 795 38.5
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 1.1e-64 252.7 595 45.5
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 4.2e-64 250.8 797 36.0
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 9.4e-64 249.6 670 41.5
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 4.7e-63 247.3 628 42.0
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 6.1e-63 246.9 795 38.5
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 8.0e-63 246.5 643 43.7
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.0e-62 246.1 475 47.4
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 1.4e-62 245.7 628 43.3
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 3.9e-62 244.2 359 54.3
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 2.6e-61 241.5 474 47.0
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 5.7e-61 240.4 683 34.6
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 6.3e-60 236.9 627 41.3
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.4e-59 235.7 530 48.3
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 1.8e-59 235.3 792 33.1
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 5.9e-58 230.3 480 41.2
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 7.7e-58 229.9 405 41.7
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 4.2e-56 224.2 623 41.7
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 3.6e-55 221.1 793 36.4
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 6.1e-55 220.3 792 34.2
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.4e-54 219.2 495 47.5
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 1.8e-54 218.8 675 39.4
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 6.7e-54 216.9 431 39.7
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 1.4e-51 209.1 758 35.2
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 4.1e-51 207.6 482 41.1
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 3.5e-50 204.5 587 41.7
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.0e-49 203.0 804 35.0
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 1.3e-49 202.6 638 33.5
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 8.8e-46 189.9 532 34.8
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 1.7e-44 185.7 308 42.9
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 4.1e-43 181.0 588 37.8
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 7.0e-43 180.3 587 38.5
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 5.9e-42 177.2 554 33.9
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.6e-39 169.1 794 29.3
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 8.3e-36 156.8 340 48.2
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.4e-30 139.4 301 37.5
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 1.5e-29 136.0 98 74.5
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.4e-27 129.4 192 46.4
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 4.3e-24 117.9 372 30.6
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.6e-23 115.9 151 48.3
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 1.8e-22 112.5 186 41.4
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 4.0e-22 111.3 420 29.5
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.3e-20 106.3 414 27.8
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 5.4e-19 100.9 395 43.0
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.0e-19 100.5 68 80.9
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 2.1e-18 99.0 117 49.6
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.9e-17 94.7 66 78.8
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 5.2e-14 84.3 68 63.2
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 8.9e-14 83.6 480 28.1
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 1.3e-12 79.7 413 26.4
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 2.2e-12 79.0 465 27.3
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-12 79.0 47 87.2
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 2.9e-12 78.6 97 50.5
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.4e-12 77.4 47 85.1
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 6.6e-09 67.4 371 30.2
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 1.9e-08 65.9 57 59.6
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 2.8e-07 62.0 96 40.6
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.7e-07 61.2 36 83.3
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.1e-07 60.5 36 80.6
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.4e-06 59.7 36 80.6
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.8e-06 59.3 84 40.5
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.8e-06 59.3 37 78.4
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 2.4e-06 58.9 36 80.6
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.4e-06 58.9 36 77.8
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.4e-06 58.9 36 77.8
Cre12.g514550 Chlamydomonas reinhardtii HOM05D003628 ORTHO05D004253 4.0e-06 58.2 95 35.8
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 4.0e-06 58.2 34 82.4
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 4.0e-06 58.2 436 24.8
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.8e-06 57.4 44 65.9


User provided reference genes

Program Settings