Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 1.2e-236 822.8 419 100.0
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 9.2e-152 540.8 292 90.1
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 1.4e-136 490.3 293 81.6
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 4.9e-129 465.3 292 76.7
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 3.3e-125 452.6 305 73.4
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 5.6e-125 451.8 290 74.8
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 3.7e-124 449.1 290 74.8
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.1e-123 447.6 306 71.9
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 1.2e-122 444.1 308 70.8
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.5e-122 443.7 308 70.8
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 3.4e-122 442.6 309 71.8
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 7.6e-122 441.4 309 70.9
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 4.9e-121 438.7 297 73.1
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 4.2e-120 435.6 309 70.2
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 7.1e-120 434.9 309 68.9
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 7.1e-120 434.9 291 71.1
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 7.1e-120 434.9 309 68.9
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 1.2e-119 434.1 309 69.9
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.1e-119 433.3 304 69.7
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 4.6e-119 432.2 305 69.2
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 7.9e-119 431.4 309 69.6
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 7.9e-119 431.4 310 68.4
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.3e-118 430.6 305 67.9
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 2.3e-118 429.9 305 67.9
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 3.0e-118 429.5 300 70.0
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 3.9e-118 429.1 310 66.8
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 6.7e-118 428.3 308 68.2
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 6.7e-118 428.3 310 68.4
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 8.7e-118 427.9 304 69.4
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 1.9e-117 426.8 309 68.6
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 3.3e-117 426.0 304 68.4
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 3.3e-117 426.0 310 67.7
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 4.3e-117 425.6 300 69.7
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 5.6e-117 425.2 310 68.4
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 5.6e-117 425.2 300 69.3
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 9.6e-117 424.5 300 69.3
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 9.6e-117 424.5 300 69.3
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 1.6e-116 423.7 306 68.6
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 1.6e-116 423.7 312 67.3
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 1.6e-116 423.7 308 70.1
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 3.7e-116 422.5 306 66.3
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 4.8e-116 422.2 307 67.4
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 4.8e-116 422.2 305 69.5
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 8.2e-116 421.4 313 66.5
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 1.1e-115 421.0 298 69.1
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 1.4e-115 420.6 299 68.6
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.4e-115 420.6 296 72.0
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 1.8e-115 420.2 310 67.4
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 4.0e-115 419.1 295 70.8
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 5.3e-115 418.7 309 67.3
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 1.2e-114 417.5 308 69.2
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 1.2e-114 417.5 292 69.9
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 3.4e-114 416.0 302 68.2
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 7.6e-114 414.8 302 67.9
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 1.7e-113 413.7 293 68.3
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.7e-113 413.7 304 68.4
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 1.7e-113 413.7 294 68.4
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 2.2e-113 413.3 296 69.9
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.9e-113 412.9 303 68.0
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 6.5e-113 411.8 310 65.5
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 8.4e-113 411.4 308 65.9
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 1.1e-112 411.0 304 67.8
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 1.9e-112 410.2 291 67.7
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 1.9e-112 410.2 306 66.0
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 5.5e-112 408.7 290 69.0
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 5.5e-112 408.7 304 66.4
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 1.6e-111 407.1 284 69.7
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 7.9e-111 404.8 293 68.9
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 1.0e-110 404.4 300 67.7
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 3.0e-110 402.9 296 68.2
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 3.9e-110 402.5 306 65.4
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.9e-110 402.5 287 70.0
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.1e-110 402.1 287 70.0
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 3.3e-109 399.4 287 69.7
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 4.3e-109 399.1 288 68.1
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.3e-108 397.5 286 69.6
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.3e-108 397.5 286 69.6
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.7e-108 396.0 287 69.3
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 4.8e-108 395.6 297 65.7
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 6.3e-108 395.2 291 66.3
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.4e-107 394.0 352 57.1
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-107 394.0 287 69.0
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-107 394.0 287 69.0
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 3.1e-107 392.9 287 68.6
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 3.1e-107 392.9 295 64.7
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 5.3e-107 392.1 352 59.1
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 5.3e-107 392.1 289 67.5
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 9.0e-107 391.3 299 65.2
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.2e-106 391.0 287 68.3
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 2.6e-106 389.8 290 66.6
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 1.0e-105 387.9 277 69.0
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.6e-103 380.6 293 64.5
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.1e-103 378.6 286 67.5
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 5.1e-102 375.6 293 63.1
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.8e-100 369.8 289 64.0
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 4.8e-100 369.0 293 62.8
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 1.8e-99 367.1 259 69.9
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 4.1e-99 365.9 309 61.2
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 5.3e-99 365.5 274 65.0
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 1.3e-97 360.9 290 61.7
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 1.7e-97 360.5 289 60.6
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.7e-97 360.5 289 61.2
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.1e-96 357.8 229 72.5
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 3.9e-94 349.4 289 59.5
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 5.1e-94 349.0 289 59.9
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 1.5e-93 347.4 333 54.4
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 7.4e-93 345.1 289 59.5
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 9.7e-93 344.7 310 62.6
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 1.3e-92 344.4 289 58.5
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.2e-92 343.6 306 59.8
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 3.7e-92 342.8 289 57.4
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 6.9e-91 338.6 229 68.6
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 9.1e-91 338.2 291 57.7
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 2.6e-90 336.7 289 58.1
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 5.5e-88 328.9 289 56.1
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 5.5e-88 328.9 289 56.1
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 1.6e-87 327.4 314 57.0
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 1.4e-86 324.3 290 55.9
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 1.4e-86 324.3 290 55.9
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 1.8e-86 323.9 291 55.7
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-85 321.2 209 74.2
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 2.8e-84 316.6 293 54.6
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 1.1e-83 314.7 302 51.0
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 8.5e-81 305.1 287 53.3
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 3.6e-79 299.7 303 51.2
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 6.1e-79 298.9 183 75.4
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 8.8e-78 295.0 308 50.3
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 6.5e-73 278.9 311 48.9
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.9e-72 277.3 196 64.8
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 4.2e-72 276.2 215 62.3
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 9.4e-72 275.0 240 57.1
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 2.9e-57 226.9 150 68.0
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 1.2e-53 214.9 171 56.1
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 2.0e-53 214.2 144 68.1
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.3e-49 201.4 325 40.3
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 9.5e-48 195.3 159 67.3
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 1.7e-44 184.5 206 51.9
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 3.7e-44 183.3 142 66.9
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 3.4e-37 160.2 253 39.9
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 6.0e-26 122.9 76 67.1
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 1.4e-22 111.7 264 30.3
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 3.4e-21 107.1 262 30.9
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 1.7e-20 104.8 305 27.2
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 6.4e-20 102.8 307 25.1
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 9.3e-19 99.0 153 42.5
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.3e-15 88.6 71 56.3
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 4.8e-15 86.7 52 73.1
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 9.0e-14 82.4 65 67.7
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 3.4e-13 80.5 51 66.7
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 5.8e-13 79.7 80 60.0
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 4.9e-12 76.6 90 50.0
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.2e-10 72.0 290 27.6
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.7e-10 70.9 46 63.0
Pp3c8_2710 Physcomitrium patens HOM05D004773 ORTHO05D005943 3.9e-09 67.0 94 34.0
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 1.1e-08 65.5 279 29.4
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 1.5e-08 65.1 288 26.7
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 1.5e-08 65.1 288 27.1
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 1.5e-08 65.1 53 56.6
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 2.5e-08 64.3 281 27.4
Rhsim05G0193200 Rhododendron simsii HOM05D021801 ORTHO05D026442 4.3e-08 63.5 129 41.9
RhsimUnG0081800 Rhododendron simsii HOM05D021801 ORTHO05D026442 4.3e-08 63.5 129 41.9
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 5.6e-08 63.2 195 30.8
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 1.6e-07 61.6 282 26.2
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 3.7e-07 60.5 162 30.9
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 6.2e-07 59.7 283 25.8
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 1.1e-06 58.9 279 26.5
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 1.4e-06 58.5 293 26.3
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 9.0e-06 55.8 195 27.7


User provided reference genes

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