Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 4.5e-67 257.7 121 100.0
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 5.0e-42 174.5 98 82.7
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 6.5e-42 174.1 80 98.8
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 8.5e-42 173.7 80 97.5
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.1e-41 173.3 80 97.5
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.1e-41 173.3 80 97.5
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.1e-41 173.3 80 97.5
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.1e-41 173.3 80 97.5
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 2.5e-41 172.2 80 96.2
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 3.2e-41 171.8 80 96.2
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 4.2e-41 171.4 80 96.2
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 4.2e-41 171.4 80 96.2
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 4.2e-41 171.4 80 96.2
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 4.2e-41 171.4 80 96.2
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 4.2e-41 171.4 80 96.2
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 5.5e-41 171.0 98 80.6
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 5.5e-41 171.0 80 95.0
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 7.2e-41 170.6 80 95.0
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 9.5e-41 170.2 80 95.0
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 9.5e-41 170.2 80 95.0
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 9.5e-41 170.2 80 95.0
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 9.5e-41 170.2 80 95.0
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 9.5e-41 170.2 80 95.0
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 9.5e-41 170.2 80 95.0
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 9.5e-41 170.2 80 95.0
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 9.5e-41 170.2 80 95.0
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 9.5e-41 170.2 80 95.0
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 1.2e-40 169.9 80 95.0
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 1.6e-40 169.5 98 79.6
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.1e-40 169.1 80 95.0
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 2.1e-40 169.1 86 88.4
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 2.8e-40 168.7 80 92.5
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 2.8e-40 168.7 80 93.8
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 2.8e-40 168.7 80 93.8
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 2.8e-40 168.7 80 93.8
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 2.8e-40 168.7 80 93.8
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 2.8e-40 168.7 103 74.8
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 3.6e-40 168.3 80 93.8
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 3.6e-40 168.3 106 74.5
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 3.6e-40 168.3 97 80.4
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.6e-40 168.3 106 75.5
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 6.1e-40 167.5 80 92.5
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 6.1e-40 167.5 80 93.8
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 6.1e-40 167.5 80 93.8
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 6.1e-40 167.5 80 93.8
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 6.1e-40 167.5 80 93.8
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 6.1e-40 167.5 80 95.0
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 6.1e-40 167.5 80 93.8
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 8.0e-40 167.2 80 92.5
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 8.0e-40 167.2 103 74.8
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 8.0e-40 167.2 80 92.5
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 8.0e-40 167.2 80 92.5
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 8.0e-40 167.2 92 83.7
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 1.0e-39 166.8 106 73.6
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 1.0e-39 166.8 81 90.1
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 1.0e-39 166.8 80 93.8
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.4e-39 166.4 80 91.2
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 1.4e-39 166.4 106 74.5
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 1.4e-39 166.4 80 92.5
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.8e-39 166.0 80 93.8
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.8e-39 166.0 103 73.8
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.8e-39 166.0 103 73.8
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.8e-39 166.0 103 73.8
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.8e-39 166.0 80 92.5
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 2.3e-39 165.6 77 96.1
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 2.3e-39 165.6 80 93.8
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 2.3e-39 165.6 80 92.5
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 2.3e-39 165.6 98 76.5
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 2.3e-39 165.6 80 90.0
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 2.3e-39 165.6 80 93.8
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 2.3e-39 165.6 80 93.8
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 3.0e-39 165.2 80 92.5
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 3.0e-39 165.2 80 92.5
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 3.0e-39 165.2 80 92.5
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 4.0e-39 164.9 103 72.8
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 4.0e-39 164.9 80 91.2
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 4.0e-39 164.9 80 90.0
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 5.2e-39 164.5 80 93.8
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 5.2e-39 164.5 80 92.5
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 5.2e-39 164.5 80 92.5
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 6.8e-39 164.1 80 90.0
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 6.8e-39 164.1 80 91.2
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 6.8e-39 164.1 103 72.8
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 8.8e-39 163.7 80 91.2
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 8.8e-39 163.7 80 90.0
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 8.8e-39 163.7 80 92.5
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 8.8e-39 163.7 80 90.0
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.2e-38 163.3 79 91.1
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 1.2e-38 163.3 80 88.8
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.2e-38 163.3 77 94.8
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.2e-38 163.3 80 91.2
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 1.2e-38 163.3 80 91.2
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 1.5e-38 162.9 80 90.0
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 1.5e-38 162.9 79 92.4
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.5e-38 162.9 80 86.2
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 2.0e-38 162.5 80 90.0
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 2.0e-38 162.5 80 88.8
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 2.6e-38 162.2 80 90.0
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.6e-38 162.2 80 88.8
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.6e-38 162.2 80 88.8
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 3.4e-38 161.8 80 90.0
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 3.4e-38 161.8 80 90.0
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 3.4e-38 161.8 80 90.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 5.7e-38 161.0 80 87.5
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 7.5e-38 160.6 80 88.8
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 7.5e-38 160.6 80 88.8
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 7.5e-38 160.6 80 88.8
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 9.8e-38 160.2 80 87.5
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.3e-37 159.8 80 88.8
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 1.3e-37 159.8 80 87.5
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 1.7e-37 159.5 80 87.5
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.7e-37 159.5 80 87.5
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.7e-37 159.5 80 87.5
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.7e-37 159.5 80 87.5
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 1.7e-37 159.5 80 87.5
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.7e-37 159.5 80 87.5
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 1.7e-37 159.5 80 87.5
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 2.8e-37 158.7 80 87.5
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 2.8e-37 158.7 80 87.5
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 2.8e-37 158.7 80 87.5
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 2.8e-37 158.7 80 87.5
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 3.7e-37 158.3 80 87.5
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 4.9e-37 157.9 80 82.5
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 8.3e-37 157.1 80 83.8
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 8.3e-37 157.1 80 87.5
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 4.1e-36 154.8 80 83.8
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.0e-31 140.2 101 67.3
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 6.6e-26 120.9 76 73.7
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 1.1e-25 120.2 58 93.1
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 3.4e-22 108.6 64 79.7
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 1.3e-13 80.1 93 43.0
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 2.2e-13 79.3 81 50.6
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 4.9e-13 78.2 59 66.1
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 9.2e-12 73.9 80 51.2
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.1e-11 72.8 121 36.4
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 1.3e-10 70.1 79 44.3


User provided reference genes

Program Settings