Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15829 Vaccinium macrocarpon HOM05D006758 ORTHO05D008326 5.0e-70 267.7 139 100.0
QL93p0073_0472 Quercus lobata HOM05D006758 ORTHO05D008326 4.6e-31 138.3 133 61.7
Haze_06744 Corylus avellana HOM05D006758 ORTHO05D008326 2.3e-30 136.0 149 55.7
FAN25G0357 Fragaria x ananassa HOM05D006758 ORTHO05D008326 5.1e-30 134.8 128 61.7
QL05p074940 Quercus lobata HOM05D006758 ORTHO05D008326 8.6e-30 134.0 124 64.5
Ah.14g088140 Amaranthus hybridus HOM05D000097 ORTHO05D000041 1.2e-26 123.6 126 55.6
FAN21G3907 Fragaria x ananassa HOM05D006758 ORTHO05D008326 2.9e-25 119.0 123 55.3
HPP92_000849 Vanilla planifolia HOM05D006758 ORTHO05D008326 1.6e-23 113.2 105 63.8
PGSC0003DMG400002083 Solanum tuberosum HOM05D006758 ORTHO05D008326 4.0e-19 98.6 124 47.6
SalBow1G3298 Salvia bowleyana HOM05D006758 ORTHO05D008326 5.8e-18 94.7 114 53.5
arahy.Tifrunner.gnm1.ann1.GJ8XD1 Arachis hypogaea HOM05D006758 ORTHO05D008326 1.7e-17 93.2 46 97.8
CDE05G3555 Ceratophyllum demersum HOM05D006758 ORTHO05D008326 2.2e-17 92.8 44 100.0
Rhsim02G0111700 Rhododendron simsii HOM05D006758 ORTHO05D008326 2.2e-17 92.8 44 100.0
DCAR_008127 Daucus carota HOM05D006758 ORTHO05D008326 4.9e-17 91.7 44 97.7
MBI02_g21861_MAGBIO Magnolia biondii HOM05D006758 ORTHO05D008326 4.9e-17 91.7 45 97.8
unitig_61.g26114 Utricularia gibba HOM05D006758 ORTHO05D008326 4.9e-17 91.7 49 91.8
Hund23506 Selenicereus undatus HOM05D006758 ORTHO05D008326 6.4e-17 91.3 122 45.1
Lalb_Chr06g0164881 Lupinus albus HOM05D006758 ORTHO05D008326 8.4e-17 90.9 44 97.7
arahy.Tifrunner.gnm1.ann1.ND4ZK6 Arachis hypogaea HOM05D006758 ORTHO05D008326 1.1e-16 90.5 44 97.7
CiPaw.09G087600 Carya illinoinensis HOM05D006758 ORTHO05D008326 1.1e-16 90.5 44 97.7
Dinv20021 Davidia involucrata HOM05D006758 ORTHO05D008326 1.1e-16 90.5 44 97.7
Glyma.10G251800 Glycine max HOM05D006758 ORTHO05D008326 1.1e-16 90.5 44 97.7
Glyma.20G141700 Glycine max HOM05D006758 ORTHO05D008326 1.1e-16 90.5 44 97.7
Lsat_1_v5_gn_4_59120 Lactuca sativa HOM05D006758 ORTHO05D008326 1.1e-16 90.5 44 97.7
Lj5g0020351 Lotus japonicus HOM05D006758 ORTHO05D008326 1.1e-16 90.5 44 97.7
ATR0661G232 Amborella trichopoda HOM05D006758 ORTHO05D008326 1.4e-16 90.1 44 95.5
Phvul.007G052700 Phaseolus vulgaris HOM05D006758 ORTHO05D008326 1.9e-16 89.7 44 97.7
TAR624G0544 Trochodendron aralioides HOM05D006758 ORTHO05D008326 1.9e-16 89.7 44 97.7
Ca_10997_v3 Cicer arietinum L. HOM05D006758 ORTHO05D008326 2.4e-16 89.4 44 95.5
PSO210G7269 Papaver somniferum HOM05D006758 ORTHO05D008326 2.4e-16 89.4 44 95.5
PSO832G0089 Papaver somniferum HOM05D006758 ORTHO05D008326 2.4e-16 89.4 44 95.5
TPR.G5478 Trifolium pratense HOM05D006758 ORTHO05D008326 2.4e-16 89.4 44 95.5
GSVIVG01012634001 Vitis vinifera HOM05D006758 ORTHO05D008326 2.4e-16 89.4 44 95.5
Eucgr.D01293 Eucalyptus grandis HOM05D006758 ORTHO05D008326 4.2e-16 88.6 43 97.7
Manes.17G035700 Manihot esculenta HOM05D006758 ORTHO05D008326 4.2e-16 88.6 43 97.7
Nitab4.5_0002347g0160 Nicotiana tabacum HOM05D006758 ORTHO05D008326 4.2e-16 88.6 43 97.7
Nitab4.5_0008530g0010 Nicotiana tabacum HOM05D006758 ORTHO05D008326 4.2e-16 88.6 43 97.7
Pp3c2_14210 Physcomitrium patens HOM05D006758 ORTHO05D008326 4.2e-16 88.6 44 95.5
Potri.004G021200 Populus trichocarpa HOM05D006758 ORTHO05D008326 4.2e-16 88.6 43 97.7
Prupe.4G025700 Prunus persica HOM05D006758 ORTHO05D008326 4.2e-16 88.6 43 97.7
PGR004G2441 Punica granatum HOM05D006758 ORTHO05D008326 4.2e-16 88.6 43 97.7
RcHm_v2.0_Chr5g0003931 Rosa chinensis HOM05D006758 ORTHO05D008326 4.2e-16 88.6 43 97.7
Sabra04G0011700 Salix brachista HOM05D006758 ORTHO05D008326 4.2e-16 88.6 43 97.7
TAR626G1807 Trochodendron aralioides HOM05D006758 ORTHO05D008326 4.2e-16 88.6 44 95.5
Hma1.2p1_2714F.1_g327410 Hydrangea macrophylla HOM05D006758 ORTHO05D008326 5.4e-16 88.2 44 95.5
Hma1.2p1_2726F.1_g327620 Hydrangea macrophylla HOM05D006758 ORTHO05D008326 5.4e-16 88.2 44 95.5
AagrBONN_evm.TU.Sc2ySwM_344.4905 Anthoceros agrestis HOM05D006758 ORTHO05D008326 9.3e-16 87.4 44 90.9
CSS0030244 Camellia sinensis var. sinensis HOM05D006758 ORTHO05D008326 9.3e-16 87.4 44 95.5
CANSAT56G2354 Cannabis sativa HOM05D006758 ORTHO05D008326 9.3e-16 87.4 43 95.3
CAN.G569.41 Capsicum annuum HOM05D006758 ORTHO05D008326 9.3e-16 87.4 43 95.3
DCAR_004197 Daucus carota HOM05D006758 ORTHO05D008326 9.3e-16 87.4 43 95.3
Migut.M01286 Erythranthe guttata HOM05D006758 ORTHO05D008326 9.3e-16 87.4 44 93.2
MD05G1341600 Malus domestica HOM05D006758 ORTHO05D008326 9.3e-16 87.4 43 95.3
Solyc02g080140.4 Solanum lycopersicum HOM05D006758 ORTHO05D008326 9.3e-16 87.4 43 95.3
Sopen02g024850 Solanum pennellii HOM05D006758 ORTHO05D008326 9.3e-16 87.4 43 95.3
SGA_v2.0_scaffold7G03879 Striga asiatica HOM05D006758 ORTHO05D008326 9.3e-16 87.4 44 93.2
ECA234G0861 Erigeron canadensis HOM05D006758 ORTHO05D008326 1.2e-15 87.0 44 93.2
Psat0s2691g0120 Pisum sativum HOM05D006758 ORTHO05D008326 1.2e-15 87.0 44 93.2
FvH4_3g02640 Fragaria vesca HOM05D006758 ORTHO05D008326 1.6e-15 86.7 42 97.6
THA.LOC104809516 Tarenaya hassleriana HOM05D006758 ORTHO05D008326 1.6e-15 86.7 44 93.2
EL10Ac8g19995 Beta vulgaris HOM05D006758 ORTHO05D008326 2.1e-15 86.3 44 93.2
HanXRQChr16g0515881 Helianthus annuus HOM05D006758 ORTHO05D008326 2.1e-15 86.3 44 93.2
Os08g0190800 Oryza sativa ssp. japonica HOM05D006758 ORTHO05D008326 2.1e-15 86.3 44 93.2
Zm00001eb413280 Zea mays HOM05D006758 ORTHO05D008326 2.1e-15 86.3 44 93.2
Ciclev10017296m.g Citrus clementina HOM05D006758 ORTHO05D008326 2.7e-15 85.9 43 93.0
Cc02_g11670 Coffea canephora HOM05D006758 ORTHO05D008326 2.7e-15 85.9 58 74.1
Sabra11G0016800 Salix brachista HOM05D006758 ORTHO05D008326 2.7e-15 85.9 43 93.0
Mapoly0102s0010 Marchantia polymorpha HOM05D006758 ORTHO05D008326 3.5e-15 85.5 43 93.0
Nn1g03624 Nelumbo nucifera HOM05D006758 ORTHO05D008326 3.5e-15 85.5 44 93.2
Sed0024295 Sechium edule HOM05D006758 ORTHO05D008326 3.5e-15 85.5 44 93.2
TWI38G0518 Tripterygium wilfordii HOM05D006758 ORTHO05D008326 3.5e-15 85.5 44 93.2
COL.COLO4_31733 Corchorus olitorius HOM05D006758 ORTHO05D008326 4.6e-15 85.1 44 90.9
Duzib235G1228 Durio zibethinus HOM05D006758 ORTHO05D008326 4.6e-15 85.1 44 90.9
MD10G1315000 Malus domestica HOM05D006758 ORTHO05D008326 4.6e-15 85.1 43 90.7
Ah.09g235270 Amaranthus hybridus HOM05D006758 ORTHO05D008326 6.0e-15 84.7 44 90.9
Gohir.A06G207900 Gossypium hirsutum HOM05D006758 ORTHO05D008326 6.0e-15 84.7 44 88.6
Gorai.010G252900 Gossypium raimondii HOM05D006758 ORTHO05D008326 6.0e-15 84.7 44 88.6
Oeu037351.1 Olea europaea HOM05D006758 ORTHO05D008326 6.0e-15 84.7 44 90.9
Aa31LG1G3210 Aethionema arabicum HOM05D006758 ORTHO05D008326 7.8e-15 84.3 44 88.6
AL2G14330 Arabidopsis lyrata HOM05D006758 ORTHO05D008326 7.8e-15 84.3 44 88.6
AT1G61780 Arabidopsis thaliana HOM05D006758 ORTHO05D008326 7.8e-15 84.3 44 88.6
BcaB04g20373 Brassica carinata HOM05D006758 ORTHO05D008326 7.8e-15 84.3 44 88.6
BcaB07g31284 Brassica carinata HOM05D006758 ORTHO05D008326 7.8e-15 84.3 44 88.6
BcaC04g22349 Brassica carinata HOM05D006758 ORTHO05D008326 7.8e-15 84.3 44 88.6
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 7.8e-15 84.3 44 88.6
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 7.8e-15 84.3 44 88.6
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 7.8e-15 84.3 44 88.6
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 7.8e-15 84.3 44 88.6
Carub.0002s0329 Capsella rubella HOM05D006758 ORTHO05D008326 7.8e-15 84.3 44 88.6
CARHR050560 Cardamine hirsuta HOM05D006758 ORTHO05D008326 7.8e-15 84.3 44 88.6
Sp2g02770 Schrenkiella parvula HOM05D006758 ORTHO05D008326 7.8e-15 84.3 44 88.6
MELO3C007373.2 Cucumis melo HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 93.0
CsaV3_6G049220 Cucumis sativus L. HOM05D006758 ORTHO05D008326 1.0e-14 84.0 43 93.0
Duzib192G0534 Durio zibethinus HOM05D006758 ORTHO05D008326 1.0e-14 84.0 44 88.6
Thhalv10023778m.g Eutrema salsugineum HOM05D006758 ORTHO05D008326 1.0e-14 84.0 44 88.6
Gohir.A09G069700 Gossypium hirsutum HOM05D006758 ORTHO05D008326 1.7e-14 83.2 43 90.7
Gohir.D09G069600 Gossypium hirsutum HOM05D006758 ORTHO05D008326 1.7e-14 83.2 43 90.7
Actinidia11840 Actinidia chinensis HOM05D006758 ORTHO05D008326 2.3e-14 82.8 44 93.2
Thecc.06G214600 Theobroma cacao HOM05D006758 ORTHO05D008326 2.3e-14 82.8 44 86.4
AUR62022003 Chenopodium quinoa HOM05D006758 ORTHO05D008326 3.9e-14 82.0 43 90.7
Gohir.D06G213300 Gossypium hirsutum HOM05D006758 ORTHO05D008326 1.9e-13 79.7 40 90.0
Atru.BG.309.p Acer truncatum HOM05D006758 ORTHO05D008326 8.1e-12 74.3 37 97.3
ClCG01G022160 Citrullus lanatus HOM05D006758 ORTHO05D008326 1.1e-11 73.9 47 83.0
Dinv17829 Davidia involucrata HOM05D006758 ORTHO05D008326 1.1e-11 73.9 38 94.7
SHI02162 Sapria himalayana HOM05D006758 ORTHO05D008326 1.1e-11 73.9 41 87.8
Sc17g0007080 Simmondsia chinensis HOM05D006758 ORTHO05D008326 3.1e-11 72.4 38 92.1
CBR_g45280 Chara braunii HOM05D006758 ORTHO05D008326 1.2e-10 70.5 40 80.0
Oeu051222.1 Olea europaea HOM05D006758 ORTHO05D008326 1.5e-10 70.1 38 86.8
Gorai.006G083800 Gossypium raimondii HOM05D006758 ORTHO05D008326 3.4e-10 68.9 37 89.2
SMO351G0293 Selaginella moellendorffii HOM05D006758 ORTHO05D008326 2.9e-09 65.9 37 81.1
Gohir.D06G213200 Gossypium hirsutum HOM05D006758 ORTHO05D008326 2.4e-08 62.8 49 65.3
Peaxi162Scf00082g10217 Petunia axillaris HOM05D006758 ORTHO05D008326 9.3e-08 60.8 28 96.4
MCO09G771 Micromonas commoda HOM05D006758 ORTHO05D008326 1.7e-06 56.6 43 60.5


User provided reference genes

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